data_2FRJ # _model_server_result.job_id 60LugDjSPZCYrm1IamCcbQ _model_server_result.datetime_utc '2024-11-13 03:56:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2frj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":154}' # _entry.id 2FRJ # _exptl.entry_id 2FRJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.96 _cell.angle_gamma 90 _cell.entry_id 2FRJ _cell.length_a 35.497 _cell.length_b 28.795 _cell.length_c 63.257 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FRJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 X HIS 93 1_555 D FE HEM . X HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc2 D FE HEM . X HEM 154 1_555 E N NO . X NO 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 2FRJ _atom_sites.fract_transf_matrix[1][1] 0.028171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008058 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016443 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 X 1 157 157 SO4 SO4 . C 2 SO4 X 1 158 158 SO4 SO4 . D 3 HEM X 1 154 154 HEM HEM . E 4 NO X 1 155 155 NO NMO . F 5 HOH X 1 159 2 HOH HOH . F 5 HOH X 2 160 3 HOH HOH . F 5 HOH X 3 161 4 HOH HOH . F 5 HOH X 4 162 5 HOH HOH . F 5 HOH X 5 163 6 HOH HOH . F 5 HOH X 6 164 7 HOH HOH . F 5 HOH X 7 165 8 HOH HOH . F 5 HOH X 8 166 9 HOH HOH . F 5 HOH X 9 167 10 HOH HOH . F 5 HOH X 10 168 11 HOH HOH . F 5 HOH X 11 169 12 HOH HOH . F 5 HOH X 12 170 13 HOH HOH . F 5 HOH X 13 171 14 HOH HOH . F 5 HOH X 14 172 15 HOH HOH . F 5 HOH X 15 173 16 HOH HOH . F 5 HOH X 16 174 17 HOH HOH . F 5 HOH X 17 175 18 HOH HOH . F 5 HOH X 18 176 19 HOH HOH . F 5 HOH X 19 177 20 HOH HOH . F 5 HOH X 20 178 21 HOH HOH . F 5 HOH X 21 179 22 HOH HOH . F 5 HOH X 22 180 23 HOH HOH . F 5 HOH X 23 181 24 HOH HOH . F 5 HOH X 24 182 25 HOH HOH . F 5 HOH X 25 183 26 HOH HOH . F 5 HOH X 26 184 27 HOH HOH . F 5 HOH X 27 185 28 HOH HOH . F 5 HOH X 28 186 29 HOH HOH . F 5 HOH X 29 187 30 HOH HOH . F 5 HOH X 30 188 31 HOH HOH . F 5 HOH X 31 189 32 HOH HOH . F 5 HOH X 32 190 33 HOH HOH . F 5 HOH X 33 191 34 HOH HOH . F 5 HOH X 34 192 35 HOH HOH . F 5 HOH X 35 193 36 HOH HOH . F 5 HOH X 36 194 37 HOH HOH . F 5 HOH X 37 195 38 HOH HOH . F 5 HOH X 38 196 39 HOH HOH . F 5 HOH X 39 197 40 HOH HOH . F 5 HOH X 40 198 41 HOH HOH . F 5 HOH X 41 199 42 HOH HOH . F 5 HOH X 42 200 43 HOH HOH . F 5 HOH X 43 201 44 HOH HOH . F 5 HOH X 44 202 45 HOH HOH . F 5 HOH X 45 203 46 HOH HOH . F 5 HOH X 46 204 47 HOH HOH . F 5 HOH X 47 205 48 HOH HOH . F 5 HOH X 48 206 49 HOH HOH . F 5 HOH X 49 207 50 HOH HOH . F 5 HOH X 50 208 51 HOH HOH . F 5 HOH X 51 209 52 HOH HOH . F 5 HOH X 52 210 53 HOH HOH . F 5 HOH X 53 211 54 HOH HOH . F 5 HOH X 54 212 55 HOH HOH . F 5 HOH X 55 213 56 HOH HOH . F 5 HOH X 56 214 57 HOH HOH . F 5 HOH X 57 215 58 HOH HOH . F 5 HOH X 58 216 59 HOH HOH . F 5 HOH X 59 217 60 HOH HOH . F 5 HOH X 60 218 61 HOH HOH . F 5 HOH X 61 219 62 HOH HOH . F 5 HOH X 62 220 63 HOH HOH . F 5 HOH X 63 221 64 HOH HOH . F 5 HOH X 64 222 65 HOH HOH . F 5 HOH X 65 223 66 HOH HOH . F 5 HOH X 66 224 67 HOH HOH . F 5 HOH X 67 225 68 HOH HOH . F 5 HOH X 68 226 69 HOH HOH . F 5 HOH X 69 227 70 HOH HOH . F 5 HOH X 70 228 71 HOH HOH . F 5 HOH X 71 229 72 HOH HOH . F 5 HOH X 72 230 73 HOH HOH . F 5 HOH X 73 231 74 HOH HOH . F 5 HOH X 74 232 75 HOH HOH . F 5 HOH X 75 233 76 HOH HOH . F 5 HOH X 76 234 77 HOH HOH . F 5 HOH X 77 235 78 HOH HOH . F 5 HOH X 78 236 79 HOH HOH . F 5 HOH X 79 237 80 HOH HOH . F 5 HOH X 80 238 81 HOH HOH . F 5 HOH X 81 239 82 HOH HOH . F 5 HOH X 82 240 83 HOH HOH . F 5 HOH X 83 241 84 HOH HOH . F 5 HOH X 84 242 85 HOH HOH . F 5 HOH X 85 243 86 HOH HOH . F 5 HOH X 86 244 87 HOH HOH . F 5 HOH X 87 245 88 HOH HOH . F 5 HOH X 88 246 89 HOH HOH . F 5 HOH X 89 247 90 HOH HOH . F 5 HOH X 90 248 91 HOH HOH . F 5 HOH X 91 249 92 HOH HOH . F 5 HOH X 92 250 93 HOH HOH . F 5 HOH X 93 251 94 HOH HOH . F 5 HOH X 94 252 95 HOH HOH . F 5 HOH X 95 253 96 HOH HOH . F 5 HOH X 96 254 97 HOH HOH . F 5 HOH X 97 255 98 HOH HOH . F 5 HOH X 98 256 99 HOH HOH . F 5 HOH X 99 257 100 HOH HOH . F 5 HOH X 100 258 101 HOH HOH . F 5 HOH X 101 259 102 HOH HOH . F 5 HOH X 102 260 103 HOH HOH . F 5 HOH X 103 261 104 HOH HOH . F 5 HOH X 104 262 105 HOH HOH . F 5 HOH X 105 263 106 HOH HOH . F 5 HOH X 106 264 107 HOH HOH . F 5 HOH X 107 265 108 HOH HOH . F 5 HOH X 108 266 109 HOH HOH . F 5 HOH X 109 267 110 HOH HOH . F 5 HOH X 110 268 111 HOH HOH . F 5 HOH X 111 269 112 HOH HOH . F 5 HOH X 112 270 113 HOH HOH . F 5 HOH X 113 271 114 HOH HOH . F 5 HOH X 114 272 115 HOH HOH . F 5 HOH X 115 273 116 HOH HOH . F 5 HOH X 116 274 117 HOH HOH . F 5 HOH X 117 275 118 HOH HOH . F 5 HOH X 118 276 119 HOH HOH . F 5 HOH X 119 277 120 HOH HOH . F 5 HOH X 120 278 121 HOH HOH . F 5 HOH X 121 279 122 HOH HOH . F 5 HOH X 122 280 123 HOH HOH . F 5 HOH X 123 281 124 HOH HOH . F 5 HOH X 124 282 125 HOH HOH . F 5 HOH X 125 283 126 HOH HOH . F 5 HOH X 126 284 127 HOH HOH . F 5 HOH X 127 285 128 HOH HOH . F 5 HOH X 128 286 129 HOH HOH . F 5 HOH X 129 287 130 HOH HOH . F 5 HOH X 130 288 132 HOH HOH . F 5 HOH X 131 289 133 HOH HOH . F 5 HOH X 132 290 134 HOH HOH . F 5 HOH X 133 291 135 HOH HOH . F 5 HOH X 134 292 136 HOH HOH . F 5 HOH X 135 293 140 HOH HOH . F 5 HOH X 136 294 141 HOH HOH . F 5 HOH X 137 295 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 3 -18.378 9.487 16.393 1 11.64 ? CHA HEM 154 X 1 HETATM 2 C CHB HEM . . . D 3 -21.879 6.336 15.369 1 12.8 ? CHB HEM 154 X 1 HETATM 3 C CHC HEM . . . D 3 -18.602 3.134 13.864 1 12.77 ? CHC HEM 154 X 1 HETATM 4 C CHD HEM . . . D 3 -15.082 6.267 14.874 1 12.83 ? CHD HEM 154 X 1 HETATM 5 C C1A HEM . . . D 3 -19.615 8.916 16.222 1 13.36 ? C1A HEM 154 X 1 HETATM 6 C C2A HEM . . . D 3 -20.875 9.582 16.52 1 12.39 ? C2A HEM 154 X 1 HETATM 7 C C3A HEM . . . D 3 -21.857 8.71 16.25 1 13.42 ? C3A HEM 154 X 1 HETATM 8 C C4A HEM . . . D 3 -21.243 7.479 15.775 1 11.93 ? C4A HEM 154 X 1 HETATM 9 C CMA HEM . . . D 3 -23.38 8.905 16.377 1 13.53 ? CMA HEM 154 X 1 HETATM 10 C CAA HEM . . . D 3 -20.995 11.04 17.018 1 14.61 ? CAA HEM 154 X 1 HETATM 11 C CBA HEM . . . D 3 -21.462 11.887 15.822 1 14.79 ? CBA HEM 154 X 1 HETATM 12 C CGA HEM . . . D 3 -20.51 11.924 14.649 1 17.5 ? CGA HEM 154 X 1 HETATM 13 O O1A HEM . . . D 3 -19.347 12.355 14.813 1 17.65 ? O1A HEM 154 X 1 HETATM 14 O O2A HEM . . . D 3 -20.938 11.568 13.513 1 18.2 ? O2A HEM 154 X 1 HETATM 15 C C1B HEM . . . D 3 -21.31 5.175 14.893 1 13.14 ? C1B HEM 154 X 1 HETATM 16 C C2B HEM . . . D 3 -22.035 3.99 14.487 1 14.29 ? C2B HEM 154 X 1 HETATM 17 C C3B HEM . . . D 3 -21.116 3.095 14.072 1 12.62 ? C3B HEM 154 X 1 HETATM 18 C C4B HEM . . . D 3 -19.809 3.705 14.19 1 12.81 ? C4B HEM 154 X 1 HETATM 19 C CMB HEM . . . D 3 -23.573 3.845 14.542 1 14.06 ? CMB HEM 154 X 1 HETATM 20 C CAB HEM . . . D 3 -21.345 1.662 13.556 1 17.6 ? CAB HEM 154 X 1 HETATM 21 C CBB HEM . . . D 3 -22.189 0.835 14.208 1 16 ? CBB HEM 154 X 1 HETATM 22 C C1C HEM . . . D 3 -17.349 3.665 14.039 1 13.53 ? C1C HEM 154 X 1 HETATM 23 C C2C HEM . . . D 3 -16.085 2.962 13.914 1 13.79 ? C2C HEM 154 X 1 HETATM 24 C C3C HEM . . . D 3 -15.103 3.843 14.211 1 13.93 ? C3C HEM 154 X 1 HETATM 25 C C4C HEM . . . D 3 -15.73 5.114 14.535 1 12.38 ? C4C HEM 154 X 1 HETATM 26 C CMC HEM . . . D 3 -16.018 1.486 13.496 1 14.47 ? CMC HEM 154 X 1 HETATM 27 C CAC HEM . . . D 3 -13.562 3.657 14.254 1 16.21 ? CAC HEM 154 X 1 HETATM 28 C CBC HEM . . . D 3 -12.949 2.481 14.13 1 16.42 ? CBC HEM 154 X 1 HETATM 29 C C1D HEM . . . D 3 -15.605 7.409 15.39 1 12.59 ? C1D HEM 154 X 1 HETATM 30 C C2D HEM . . . D 3 -14.839 8.508 15.924 1 13.45 ? C2D HEM 154 X 1 HETATM 31 C C3D HEM . . . D 3 -15.876 9.491 16.404 1 13.68 ? C3D HEM 154 X 1 HETATM 32 C C4D HEM . . . D 3 -17.164 8.907 16.117 1 12.74 ? C4D HEM 154 X 1 HETATM 33 C CMD HEM . . . D 3 -13.314 8.697 16.012 1 16.75 ? CMD HEM 154 X 1 HETATM 34 C CAD HEM . . . D 3 -15.567 10.825 17.1 1 15.12 ? CAD HEM 154 X 1 HETATM 35 C CBD HEM . . . D 3 -15.456 10.513 18.598 1 18.04 ? CBD HEM 154 X 1 HETATM 36 C CGD HEM . . . D 3 -15.18 11.749 19.41 1 24.57 ? CGD HEM 154 X 1 HETATM 37 O O1D HEM . . . D 3 -16.152 12.304 19.984 1 24.63 ? O1D HEM 154 X 1 HETATM 38 O O2D HEM . . . D 3 -13.994 12.158 19.488 1 27.42 ? O2D HEM 154 X 1 HETATM 39 N NA HEM . . . D 3 -19.872 7.633 15.766 1 13.26 ? NA HEM 154 X 1 HETATM 40 N NB HEM . . . D 3 -19.964 4.986 14.675 1 12.89 ? NB HEM 154 X 1 HETATM 41 N NC HEM . . . D 3 -17.087 4.943 14.44 1 11.41 ? NC HEM 154 X 1 HETATM 42 N ND HEM . . . D 3 -16.96 7.669 15.523 1 11.89 ? ND HEM 154 X 1 HETATM 43 FE FE HEM . . . D 3 -18.465 6.313 15.104 1 13.52 ? FE HEM 154 X 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #