data_2FRK # _model_server_result.job_id 3EkJA4ADueYesG3vqJ5gRA _model_server_result.datetime_utc '2024-11-24 13:30:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2frk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":154}' # _entry.id 2FRK # _exptl.entry_id 2FRK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.65 _cell.angle_gamma 90 _cell.entry_id 2FRK _cell.length_a 35.516 _cell.length_b 28.605 _cell.length_c 63.294 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FRK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 X HIS 93 1_555 C FE HEM . X HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc2 C FE HEM . X HEM 154 1_555 D N NO . X NO 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 2FRK _atom_sites.fract_transf_matrix[1][1] 0.028156 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007888 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016408 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 X 1 157 157 SO4 SO4 . C 3 HEM X 1 154 154 HEM HEM . D 4 NO X 1 155 155 NO NMO . E 5 HOH X 1 158 1 HOH HOH . E 5 HOH X 2 159 2 HOH HOH . E 5 HOH X 3 160 3 HOH HOH . E 5 HOH X 4 161 4 HOH HOH . E 5 HOH X 5 162 5 HOH HOH . E 5 HOH X 6 163 6 HOH HOH . E 5 HOH X 7 164 7 HOH HOH . E 5 HOH X 8 165 8 HOH HOH . E 5 HOH X 9 166 9 HOH HOH . E 5 HOH X 10 167 10 HOH HOH . E 5 HOH X 11 168 11 HOH HOH . E 5 HOH X 12 169 12 HOH HOH . E 5 HOH X 13 170 13 HOH HOH . E 5 HOH X 14 171 14 HOH HOH . E 5 HOH X 15 172 15 HOH HOH . E 5 HOH X 16 173 16 HOH HOH . E 5 HOH X 17 174 17 HOH HOH . E 5 HOH X 18 175 18 HOH HOH . E 5 HOH X 19 176 19 HOH HOH . E 5 HOH X 20 177 20 HOH HOH . E 5 HOH X 21 178 21 HOH HOH . E 5 HOH X 22 179 22 HOH HOH . E 5 HOH X 23 180 23 HOH HOH . E 5 HOH X 24 181 24 HOH HOH . E 5 HOH X 25 182 25 HOH HOH . E 5 HOH X 26 183 26 HOH HOH . E 5 HOH X 27 184 27 HOH HOH . E 5 HOH X 28 185 28 HOH HOH . E 5 HOH X 29 186 29 HOH HOH . E 5 HOH X 30 187 30 HOH HOH . E 5 HOH X 31 188 31 HOH HOH . E 5 HOH X 32 189 32 HOH HOH . E 5 HOH X 33 190 33 HOH HOH . E 5 HOH X 34 191 34 HOH HOH . E 5 HOH X 35 192 35 HOH HOH . E 5 HOH X 36 193 36 HOH HOH . E 5 HOH X 37 194 37 HOH HOH . E 5 HOH X 38 195 38 HOH HOH . E 5 HOH X 39 196 39 HOH HOH . E 5 HOH X 40 197 40 HOH HOH . E 5 HOH X 41 198 41 HOH HOH . E 5 HOH X 42 199 42 HOH HOH . E 5 HOH X 43 200 43 HOH HOH . E 5 HOH X 44 201 44 HOH HOH . E 5 HOH X 45 202 45 HOH HOH . E 5 HOH X 46 203 47 HOH HOH . E 5 HOH X 47 204 48 HOH HOH . E 5 HOH X 48 205 49 HOH HOH . E 5 HOH X 49 206 50 HOH HOH . E 5 HOH X 50 207 51 HOH HOH . E 5 HOH X 51 208 52 HOH HOH . E 5 HOH X 52 209 54 HOH HOH . E 5 HOH X 53 210 55 HOH HOH . E 5 HOH X 54 211 56 HOH HOH . E 5 HOH X 55 212 58 HOH HOH . E 5 HOH X 56 213 59 HOH HOH . E 5 HOH X 57 214 60 HOH HOH . E 5 HOH X 58 215 61 HOH HOH . E 5 HOH X 59 216 62 HOH HOH . E 5 HOH X 60 217 63 HOH HOH . E 5 HOH X 61 218 64 HOH HOH . E 5 HOH X 62 219 65 HOH HOH . E 5 HOH X 63 220 66 HOH HOH . E 5 HOH X 64 221 67 HOH HOH . E 5 HOH X 65 222 68 HOH HOH . E 5 HOH X 66 223 69 HOH HOH . E 5 HOH X 67 224 70 HOH HOH . E 5 HOH X 68 225 71 HOH HOH . E 5 HOH X 69 226 72 HOH HOH . E 5 HOH X 70 227 73 HOH HOH . E 5 HOH X 71 228 74 HOH HOH . E 5 HOH X 72 229 75 HOH HOH . E 5 HOH X 73 230 76 HOH HOH . E 5 HOH X 74 231 77 HOH HOH . E 5 HOH X 75 232 78 HOH HOH . E 5 HOH X 76 233 79 HOH HOH . E 5 HOH X 77 234 80 HOH HOH . E 5 HOH X 78 235 81 HOH HOH . E 5 HOH X 79 236 82 HOH HOH . E 5 HOH X 80 237 83 HOH HOH . E 5 HOH X 81 238 84 HOH HOH . E 5 HOH X 82 239 85 HOH HOH . E 5 HOH X 83 240 86 HOH HOH . E 5 HOH X 84 241 87 HOH HOH . E 5 HOH X 85 242 88 HOH HOH . E 5 HOH X 86 243 89 HOH HOH . E 5 HOH X 87 244 90 HOH HOH . E 5 HOH X 88 245 91 HOH HOH . E 5 HOH X 89 246 92 HOH HOH . E 5 HOH X 90 247 93 HOH HOH . E 5 HOH X 91 248 94 HOH HOH . E 5 HOH X 92 249 95 HOH HOH . E 5 HOH X 93 250 96 HOH HOH . E 5 HOH X 94 251 97 HOH HOH . E 5 HOH X 95 252 99 HOH HOH . E 5 HOH X 96 253 100 HOH HOH . E 5 HOH X 97 254 101 HOH HOH . E 5 HOH X 98 255 102 HOH HOH . E 5 HOH X 99 256 103 HOH HOH . E 5 HOH X 100 257 104 HOH HOH . E 5 HOH X 101 258 105 HOH HOH . E 5 HOH X 102 259 106 HOH HOH . E 5 HOH X 103 260 107 HOH HOH . E 5 HOH X 104 261 108 HOH HOH . E 5 HOH X 105 262 109 HOH HOH . E 5 HOH X 106 263 112 HOH HOH . E 5 HOH X 107 264 113 HOH HOH . E 5 HOH X 108 265 114 HOH HOH . E 5 HOH X 109 266 115 HOH HOH . E 5 HOH X 110 267 116 HOH HOH . E 5 HOH X 111 268 117 HOH HOH . E 5 HOH X 112 269 118 HOH HOH . E 5 HOH X 113 270 119 HOH HOH . E 5 HOH X 114 271 120 HOH HOH . E 5 HOH X 115 272 121 HOH HOH . E 5 HOH X 116 273 122 HOH HOH . E 5 HOH X 117 274 123 HOH HOH . E 5 HOH X 118 275 124 HOH HOH . E 5 HOH X 119 276 125 HOH HOH . E 5 HOH X 120 277 126 HOH HOH . E 5 HOH X 121 278 127 HOH HOH . E 5 HOH X 122 279 128 HOH HOH . E 5 HOH X 123 280 129 HOH HOH . E 5 HOH X 124 281 130 HOH HOH . E 5 HOH X 125 282 131 HOH HOH . E 5 HOH X 126 283 132 HOH HOH . E 5 HOH X 127 284 133 HOH HOH . E 5 HOH X 128 285 134 HOH HOH . E 5 HOH X 129 286 135 HOH HOH . E 5 HOH X 130 287 136 HOH HOH . E 5 HOH X 131 288 138 HOH HOH . E 5 HOH X 132 289 139 HOH HOH . E 5 HOH X 133 290 140 HOH HOH . E 5 HOH X 134 291 142 HOH HOH . E 5 HOH X 135 292 143 HOH HOH . E 5 HOH X 136 293 144 HOH HOH . E 5 HOH X 137 294 145 HOH HOH . E 5 HOH X 138 295 146 HOH HOH . E 5 HOH X 139 296 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 -0.507 9.532 16.419 1 11.43 ? CHA HEM 154 X 1 HETATM 2 C CHB HEM . . . C 3 -4.05 6.396 15.355 1 12.06 ? CHB HEM 154 X 1 HETATM 3 C CHC HEM . . . C 3 -0.723 3.146 13.961 1 10.33 ? CHC HEM 154 X 1 HETATM 4 C CHD HEM . . . C 3 2.836 6.254 14.965 1 12.78 ? CHD HEM 154 X 1 HETATM 5 C C1A HEM . . . C 3 -1.75 8.97 16.23 1 11.95 ? C1A HEM 154 X 1 HETATM 6 C C2A HEM . . . C 3 -3.027 9.624 16.48 1 11.11 ? C2A HEM 154 X 1 HETATM 7 C C3A HEM . . . C 3 -4.013 8.764 16.202 1 11.7 ? C3A HEM 154 X 1 HETATM 8 C C4A HEM . . . C 3 -3.383 7.533 15.759 1 11.29 ? C4A HEM 154 X 1 HETATM 9 C CMA HEM . . . C 3 -5.54 8.974 16.306 1 12.98 ? CMA HEM 154 X 1 HETATM 10 C CAA HEM . . . C 3 -3.175 11.075 16.958 1 14.09 ? CAA HEM 154 X 1 HETATM 11 C CBA HEM . . . C 3 -3.61 11.939 15.76 1 14.08 ? CBA HEM 154 X 1 HETATM 12 C CGA HEM . . . C 3 -2.638 11.957 14.599 1 13.05 ? CGA HEM 154 X 1 HETATM 13 O O1A HEM . . . C 3 -1.461 12.354 14.8 1 18.15 ? O1A HEM 154 X 1 HETATM 14 O O2A HEM . . . C 3 -3.041 11.578 13.466 1 17.94 ? O2A HEM 154 X 1 HETATM 15 C C1B HEM . . . C 3 -3.473 5.239 14.89 1 12.7 ? C1B HEM 154 X 1 HETATM 16 C C2B HEM . . . C 3 -4.174 4.044 14.475 1 11.07 ? C2B HEM 154 X 1 HETATM 17 C C3B HEM . . . C 3 -3.256 3.135 14.097 1 11.26 ? C3B HEM 154 X 1 HETATM 18 C C4B HEM . . . C 3 -1.941 3.732 14.251 1 10.78 ? C4B HEM 154 X 1 HETATM 19 C CMB HEM . . . C 3 -5.707 3.924 14.505 1 11.8 ? CMB HEM 154 X 1 HETATM 20 C CAB HEM . . . C 3 -3.503 1.71 13.594 1 12.43 ? CAB HEM 154 X 1 HETATM 21 C CBB HEM . . . C 3 -4.391 0.908 14.194 1 13.74 ? CBB HEM 154 X 1 HETATM 22 C C1C HEM . . . C 3 0.544 3.664 14.148 1 10.19 ? C1C HEM 154 X 1 HETATM 23 C C2C HEM . . . C 3 1.815 2.972 13.996 1 11.56 ? C2C HEM 154 X 1 HETATM 24 C C3C HEM . . . C 3 2.798 3.842 14.283 1 12.16 ? C3C HEM 154 X 1 HETATM 25 C C4C HEM . . . C 3 2.181 5.103 14.62 1 13.5 ? C4C HEM 154 X 1 HETATM 26 C CMC HEM . . . C 3 1.943 1.498 13.585 1 13.18 ? CMC HEM 154 X 1 HETATM 27 C CAC HEM . . . C 3 4.325 3.623 14.298 1 15.58 ? CAC HEM 154 X 1 HETATM 28 C CBC HEM . . . C 3 4.884 2.421 14.172 1 16.63 ? CBC HEM 154 X 1 HETATM 29 C C1D HEM . . . C 3 2.274 7.394 15.466 1 13 ? C1D HEM 154 X 1 HETATM 30 C C2D HEM . . . C 3 3.026 8.513 15.983 1 13.72 ? C2D HEM 154 X 1 HETATM 31 C C3D HEM . . . C 3 1.991 9.52 16.444 1 14.73 ? C3D HEM 154 X 1 HETATM 32 C C4D HEM . . . C 3 0.706 8.932 16.152 1 11.4 ? C4D HEM 154 X 1 HETATM 33 C CMD HEM . . . C 3 4.559 8.666 16.067 1 15.49 ? CMD HEM 154 X 1 HETATM 34 C CAD HEM . . . C 3 2.297 10.874 17.107 1 14.59 ? CAD HEM 154 X 1 HETATM 35 C CBD HEM . . . C 3 2.507 10.503 18.578 1 20.54 ? CBD HEM 154 X 1 HETATM 36 C CGD HEM . . . C 3 2.868 11.674 19.441 1 23.65 ? CGD HEM 154 X 1 HETATM 37 O O1D HEM . . . C 3 1.943 12.257 20.049 1 26.96 ? O1D HEM 154 X 1 HETATM 38 O O2D HEM . . . C 3 4.078 11.998 19.527 1 27.15 ? O2D HEM 154 X 1 HETATM 39 N NA HEM . . . C 3 -2.007 7.691 15.779 1 11.41 ? NA HEM 154 X 1 HETATM 40 N NB HEM . . . C 3 -2.124 5.017 14.71 1 11.07 ? NB HEM 154 X 1 HETATM 41 N NC HEM . . . C 3 0.817 4.957 14.51 1 10.61 ? NC HEM 154 X 1 HETATM 42 N ND HEM . . . C 3 0.91 7.661 15.592 1 9.62 ? ND HEM 154 X 1 HETATM 43 FE FE HEM . . . C 3 -0.628 6.374 15.028 1 12.32 ? FE HEM 154 X 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #