data_2FT3 # _model_server_result.job_id X_l5amr8FzqqOpaGKh09fw _model_server_result.datetime_utc '2024-11-05 00:31:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ft3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":807}' # _entry.id 2FT3 # _exptl.entry_id 2FT3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.61 _cell.angle_gamma 90 _cell.entry_id 2FT3 _cell.length_a 206.511 _cell.length_b 119.222 _cell.length_c 140.625 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J 1 1 C,D,K,L,M,N 2 1 E,F,O,P,Q,R 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 27 1_555 A SG CYS 33 A CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 31 A CYS 31 1_555 A SG CYS 40 A CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf3 A SG CYS 285 A CYS 285 1_555 A SG CYS 318 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf4 B SG CYS 27 B CYS 27 1_555 B SG CYS 33 B CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 B SG CYS 31 B CYS 31 1_555 B SG CYS 40 B CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf6 B SG CYS 285 B CYS 285 1_555 B SG CYS 318 B CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 C SG CYS 27 C CYS 27 1_555 C SG CYS 33 C CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf8 C SG CYS 31 C CYS 31 1_555 C SG CYS 40 C CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf9 C SG CYS 285 C CYS 285 1_555 C SG CYS 318 C CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf10 D SG CYS 27 D CYS 27 1_555 D SG CYS 33 D CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 D SG CYS 31 D CYS 31 1_555 D SG CYS 40 D CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf12 D SG CYS 285 D CYS 285 1_555 D SG CYS 318 D CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf13 E SG CYS 27 E CYS 27 1_555 E SG CYS 33 E CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf14 E SG CYS 31 E CYS 31 1_555 E SG CYS 40 E CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf15 E SG CYS 285 E CYS 285 1_555 E SG CYS 318 E CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf16 F SG CYS 27 F CYS 27 1_555 F SG CYS 33 F CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf17 F SG CYS 31 F CYS 31 1_555 F SG CYS 40 F CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf18 F SG CYS 285 F CYS 285 1_555 F SG CYS 318 F CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? covale ? covale1 A ND2 ASN 275 A ASN 275 1_555 G C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale2 B ND2 ASN 275 B ASN 275 1_555 I C1 NAG . B NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? covale ? covale3 C ND2 ASN 275 C ASN 275 1_555 K C1 NAG . C NAG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale4 D CA GLY 225 D GLY 225 1_555 N OB2 FLC . D FLC 2193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? covale ? covale5 D ND2 ASN 275 D ASN 275 1_555 M C1 NAG . D NAG 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 E ND2 ASN 275 E ASN 275 1_555 O C1 NAG . E NAG 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale7 F ND2 ASN 275 F ASN 275 1_555 Q C1 NAG . F NAG 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 252 n n C1 O1 NAG sing 253 n n C1 O5 NAG sing 254 n n C1 H1 NAG sing 255 n n C2 C3 NAG sing 256 n n C2 N2 NAG sing 257 n n C2 H2 NAG sing 258 n n C3 C4 NAG sing 259 n n C3 O3 NAG sing 260 n n C3 H3 NAG sing 261 n n C4 C5 NAG sing 262 n n C4 O4 NAG sing 263 n n C4 H4 NAG sing 264 n n C5 C6 NAG sing 265 n n C5 O5 NAG sing 266 n n C5 H5 NAG sing 267 n n C6 O6 NAG sing 268 n n C6 H61 NAG sing 269 n n C6 H62 NAG sing 270 n n C7 C8 NAG sing 271 n n C7 N2 NAG sing 272 n n C7 O7 NAG doub 273 n n C8 H81 NAG sing 274 n n C8 H82 NAG sing 275 n n C8 H83 NAG sing 276 n n N2 HN2 NAG sing 277 n n O1 HO1 NAG sing 278 n n O3 HO3 NAG sing 279 n n O4 HO4 NAG sing 280 n n O6 HO6 NAG sing 281 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2FT3 _atom_sites.fract_transf_matrix[1][1] 0.00484 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00243 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00839 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00795 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NAG A 1 801 801 NAG NAG . H 3 FLC A 1 2190 2190 FLC FLC . I 2 NAG B 1 803 803 NAG NAG . J 3 FLC B 1 2191 2191 FLC FLC . K 2 NAG C 1 805 805 NAG NAG . L 3 FLC C 1 2192 2192 FLC FLC . M 2 NAG D 1 807 807 NAG NAG . N 3 FLC D 1 2193 2193 FLC FLC . O 2 NAG E 1 809 809 NAG NAG . P 3 FLC E 1 2194 2194 FLC FLC . Q 2 NAG F 1 811 811 NAG NAG . R 3 FLC F 1 2195 2195 FLC FLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . M 2 -18.809 -8.244 80.73 1 58.04 ? C1 NAG 807 D 1 HETATM 2 C C2 NAG . . . M 2 -20.039 -7.905 79.87 1 59.62 ? C2 NAG 807 D 1 HETATM 3 C C3 NAG . . . M 2 -19.796 -7.985 78.333 1 59.88 ? C3 NAG 807 D 1 HETATM 4 C C4 NAG . . . M 2 -18.938 -9.222 77.922 1 59.94 ? C4 NAG 807 D 1 HETATM 5 C C5 NAG . . . M 2 -18.5 -10.036 79.161 1 59.99 ? C5 NAG 807 D 1 HETATM 6 C C6 NAG . . . M 2 -17.604 -11.273 78.862 1 59.75 ? C6 NAG 807 D 1 HETATM 7 C C7 NAG . . . M 2 -22.47 -8.49 79.952 1 61.96 ? C7 NAG 807 D 1 HETATM 8 C C8 NAG . . . M 2 -22.873 -7.448 78.919 1 61.95 ? C8 NAG 807 D 1 HETATM 9 N N2 NAG . . . M 2 -21.175 -8.752 80.254 1 61.25 ? N2 NAG 807 D 1 HETATM 10 O O3 NAG . . . M 2 -19.332 -6.741 77.789 1 59.53 ? O3 NAG 807 D 1 HETATM 11 O O4 NAG . . . M 2 -19.613 -10.07 76.988 1 58.92 ? O4 NAG 807 D 1 HETATM 12 O O5 NAG . . . M 2 -17.905 -9.101 80.05 1 59.51 ? O5 NAG 807 D 1 HETATM 13 O O6 NAG . . . M 2 -16.205 -10.997 78.773 1 59.18 ? O6 NAG 807 D 1 HETATM 14 O O7 NAG . . . M 2 -23.363 -9.109 80.53 1 62.96 ? O7 NAG 807 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #