data_2FV7
#
_model_server_result.job_id            o2SqMIUIUimu1edtH_PIHg 
_model_server_result.datetime_utc      '2024-10-12 14:26:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2fv7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":402}' 
#
_entry.id    2FV7 
#
_exptl.entry_id    2FV7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.08 
_cell.angle_gamma         90 
_cell.entry_id            2FV7 
_cell.length_a            45.53 
_cell.length_b            72.978 
_cell.length_c            90.958 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2FV7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 1 1 
A,C,D,E,F,G,H,I,J,K,U 2 1 
B,L,M,N,O,P,Q,R,S,T,V 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_745 -x+2,y-1/2,-z -1 0 0 0 1 0 0 0 -1 91.06 -36.489 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASP 272 A ASP 263 1_555 C NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc2 A O SER 310 A SER 301 1_555 C NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc3 A O ALA 313 A ALA 304 1_555 C NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc4 A OG SER 319 A SER 310 1_555 C NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? 
metalc ? metalc5 E O2B ADP . A ADP 401 1_555 D MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc6 C NA NA . A NA 403 1_555 U O HOH . A HOH 878 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? 
metalc ? metalc7 C NA NA . A NA 403 1_555 U O HOH . A HOH 879 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc8 D MG MG . A MG 404 1_555 U O HOH . A HOH 817 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc9 D MG MG . A MG 404 1_555 U O HOH . A HOH 819 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc10 D MG MG . A MG 404 1_555 U O HOH . A HOH 825 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc11 B O ASP 272 B ASP 263 1_555 L NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc12 B O SER 310 B SER 301 1_555 L NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc13 B O ALA 313 B ALA 304 1_555 L NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc14 N O2B ADP . B ADP 402 1_555 M MG MG . B MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc15 L NA NA . B NA 405 1_555 V O HOH . B HOH 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc16 L NA NA . B NA 405 1_555 V O HOH . B HOH 853 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc17 M MG MG . B MG 406 1_555 V O HOH . B HOH 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc18 M MG MG . B MG 406 1_555 V O HOH . B HOH 859 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc19 M MG MG . B MG 406 1_555 V O HOH . B HOH 864 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? 
metalc ? metalc20 M MG MG . B MG 406 1_555 V O HOH . B HOH 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     2FV7 
_atom_sites.fract_transf_matrix[1][1]    0.021964 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000414 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013703 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010996 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 403 403 NA NA . 
D 3 MG A 1 404 404 MG MG . 
E 4 ADP A 1 401 401 ADP ADP . 
F 5 UNX A 1 501 501 UNX UNX . 
G 5 UNX A 1 506 506 UNX UNX . 
H 5 UNX A 1 507 507 UNX UNX . 
I 5 UNX A 1 508 508 UNX UNX . 
J 5 UNX A 1 510 510 UNX UNX . 
K 5 UNX A 1 512 512 UNX UNX . 
L 2 NA B 1 405 405 NA NA . 
M 3 MG B 1 406 406 MG MG . 
N 4 ADP B 1 402 402 ADP ADP . 
O 5 UNX B 1 502 502 UNX UNX . 
P 5 UNX B 1 503 503 UNX UNX . 
Q 5 UNX B 1 504 504 UNX UNX . 
R 5 UNX B 1 505 505 UNX UNX . 
S 5 UNX B 1 509 509 UNX UNX . 
T 5 UNX B 1 511 511 UNX UNX . 
U 6 HOH A 1 801 801 HOH HOH . 
U 6 HOH A 2 802 802 HOH HOH . 
U 6 HOH A 3 804 804 HOH HOH . 
U 6 HOH A 4 805 805 HOH HOH . 
U 6 HOH A 5 808 808 HOH HOH . 
U 6 HOH A 6 811 811 HOH HOH . 
U 6 HOH A 7 816 816 HOH HOH . 
U 6 HOH A 8 817 817 HOH HOH . 
U 6 HOH A 9 819 819 HOH HOH . 
U 6 HOH A 10 822 822 HOH HOH . 
U 6 HOH A 11 825 825 HOH HOH . 
U 6 HOH A 12 826 826 HOH HOH . 
U 6 HOH A 13 828 828 HOH HOH . 
U 6 HOH A 14 830 830 HOH HOH . 
U 6 HOH A 15 832 832 HOH HOH . 
U 6 HOH A 16 833 833 HOH HOH . 
U 6 HOH A 17 834 834 HOH HOH . 
U 6 HOH A 18 835 835 HOH HOH . 
U 6 HOH A 19 836 836 HOH HOH . 
U 6 HOH A 20 837 837 HOH HOH . 
U 6 HOH A 21 838 838 HOH HOH . 
U 6 HOH A 22 846 846 HOH HOH . 
U 6 HOH A 23 848 848 HOH HOH . 
U 6 HOH A 24 849 849 HOH HOH . 
U 6 HOH A 25 852 852 HOH HOH . 
U 6 HOH A 26 855 855 HOH HOH . 
U 6 HOH A 27 856 856 HOH HOH . 
U 6 HOH A 28 858 858 HOH HOH . 
U 6 HOH A 29 861 861 HOH HOH . 
U 6 HOH A 30 862 862 HOH HOH . 
U 6 HOH A 31 863 863 HOH HOH . 
U 6 HOH A 32 865 865 HOH HOH . 
U 6 HOH A 33 867 867 HOH HOH . 
U 6 HOH A 34 868 868 HOH HOH . 
U 6 HOH A 35 870 870 HOH HOH . 
U 6 HOH A 36 875 875 HOH HOH . 
U 6 HOH A 37 876 876 HOH HOH . 
U 6 HOH A 38 878 878 HOH HOH . 
U 6 HOH A 39 879 879 HOH HOH . 
U 6 HOH A 40 880 880 HOH HOH . 
V 6 HOH B 1 803 803 HOH HOH . 
V 6 HOH B 2 806 806 HOH HOH . 
V 6 HOH B 3 807 807 HOH HOH . 
V 6 HOH B 4 809 809 HOH HOH . 
V 6 HOH B 5 810 810 HOH HOH . 
V 6 HOH B 6 812 812 HOH HOH . 
V 6 HOH B 7 813 813 HOH HOH . 
V 6 HOH B 8 814 814 HOH HOH . 
V 6 HOH B 9 815 815 HOH HOH . 
V 6 HOH B 10 818 818 HOH HOH . 
V 6 HOH B 11 820 820 HOH HOH . 
V 6 HOH B 12 821 821 HOH HOH . 
V 6 HOH B 13 823 823 HOH HOH . 
V 6 HOH B 14 824 824 HOH HOH . 
V 6 HOH B 15 827 827 HOH HOH . 
V 6 HOH B 16 829 829 HOH HOH . 
V 6 HOH B 17 831 831 HOH HOH . 
V 6 HOH B 18 839 839 HOH HOH . 
V 6 HOH B 19 840 840 HOH HOH . 
V 6 HOH B 20 841 841 HOH HOH . 
V 6 HOH B 21 842 842 HOH HOH . 
V 6 HOH B 22 843 843 HOH HOH . 
V 6 HOH B 23 844 844 HOH HOH . 
V 6 HOH B 24 845 845 HOH HOH . 
V 6 HOH B 25 847 847 HOH HOH . 
V 6 HOH B 26 850 850 HOH HOH . 
V 6 HOH B 27 851 851 HOH HOH . 
V 6 HOH B 28 853 853 HOH HOH . 
V 6 HOH B 29 854 854 HOH HOH . 
V 6 HOH B 30 857 857 HOH HOH . 
V 6 HOH B 31 859 859 HOH HOH . 
V 6 HOH B 32 860 860 HOH HOH . 
V 6 HOH B 33 864 864 HOH HOH . 
V 6 HOH B 34 866 866 HOH HOH . 
V 6 HOH B 35 869 869 HOH HOH . 
V 6 HOH B 36 871 871 HOH HOH . 
V 6 HOH B 37 872 872 HOH HOH . 
V 6 HOH B 38 873 873 HOH HOH . 
V 6 HOH B 39 874 874 HOH HOH . 
V 6 HOH B 40 877 877 HOH HOH . 
V 6 HOH B 41 881 881 HOH HOH . 
V 6 HOH B 42 882 882 HOH HOH . 
V 6 HOH B 43 883 883 HOH HOH . 
V 6 HOH B 44 884 884 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . N 4 41.649 44.295 29.474 1 47.37 ? PB ADP 402 B 1 
HETATM 2 O O1B ADP . . . N 4 43.107 43.966 29.199 1 47.57 ? O1B ADP 402 B 1 
HETATM 3 O O2B ADP . . . N 4 41.394 44.855 30.859 1 45.91 ? O2B ADP 402 B 1 
HETATM 4 O O3B ADP . . . N 4 40.951 44.989 28.295 1 47.5 ? O3B ADP 402 B 1 
HETATM 5 P PA ADP . . . N 4 41.233 41.554 28.715 1 42.31 ? PA ADP 402 B 1 
HETATM 6 O O1A ADP . . . N 4 42.133 41.845 27.516 1 42.39 ? O1A ADP 402 B 1 
HETATM 7 O O2A ADP . . . N 4 41.652 40.484 29.72 1 43.01 ? O2A ADP 402 B 1 
HETATM 8 O O3A ADP . . . N 4 40.86 42.872 29.555 1 44.67 ? O3A ADP 402 B 1 
HETATM 9 O O5' ADP . . . N 4 39.777 41.18 28.154 1 41.85 ? O5' ADP 402 B 1 
HETATM 10 C C5' ADP . . . N 4 38.573 41.344 28.909 1 37.81 ? C5' ADP 402 B 1 
HETATM 11 C C4' ADP . . . N 4 37.544 40.37 28.382 1 35.65 ? C4' ADP 402 B 1 
HETATM 12 O O4' ADP . . . N 4 37.328 40.619 26.989 1 34.43 ? O4' ADP 402 B 1 
HETATM 13 C C3' ADP . . . N 4 37.977 38.923 28.464 1 35.73 ? C3' ADP 402 B 1 
HETATM 14 O O3' ADP . . . N 4 37.678 38.348 29.732 1 36.18 ? O3' ADP 402 B 1 
HETATM 15 C C2' ADP . . . N 4 37.213 38.283 27.324 1 35.22 ? C2' ADP 402 B 1 
HETATM 16 O O2' ADP . . . N 4 35.884 37.929 27.741 1 36.23 ? O2' ADP 402 B 1 
HETATM 17 C C1' ADP . . . N 4 37.154 39.388 26.279 1 34.26 ? C1' ADP 402 B 1 
HETATM 18 N N9 ADP . . . N 4 38.194 39.249 25.213 1 33.23 ? N9 ADP 402 B 1 
HETATM 19 C C8 ADP . . . N 4 39.363 39.942 25.067 1 32.68 ? C8 ADP 402 B 1 
HETATM 20 N N7 ADP . . . N 4 40.05 39.548 23.955 1 32.28 ? N7 ADP 402 B 1 
HETATM 21 C C5 ADP . . . N 4 39.297 38.595 23.365 1 33.37 ? C5 ADP 402 B 1 
HETATM 22 C C6 ADP . . . N 4 39.384 37.762 22.167 1 33.97 ? C6 ADP 402 B 1 
HETATM 23 N N6 ADP . . . N 4 40.457 37.847 21.342 1 33.79 ? N6 ADP 402 B 1 
HETATM 24 N N1 ADP . . . N 4 38.365 36.881 21.928 1 34.79 ? N1 ADP 402 B 1 
HETATM 25 C C2 ADP . . . N 4 37.295 36.776 22.727 1 33.1 ? C2 ADP 402 B 1 
HETATM 26 N N3 ADP . . . N 4 37.153 37.522 23.822 1 33.03 ? N3 ADP 402 B 1 
HETATM 27 C C4 ADP . . . N 4 38.088 38.411 24.192 1 33.21 ? C4 ADP 402 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#