data_2FVJ # _model_server_result.job_id QvTollkdFh5cwj94rHSKNw _model_server_result.datetime_utc '2024-11-19 13:14:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fvj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 2FVJ # _exptl.entry_id 2FVJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2FVJ _cell.length_a 53.483 _cell.length_b 65.897 _cell.length_c 87.538 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FVJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2FVJ _atom_sites.fract_transf_matrix[1][1] 0.018698 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011424 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 RO0 A 1 501 1 RO0 RO0 . D 4 GOL A 1 601 1 GOL GOL . E 5 HOH A 1 602 1 HOH HOH . E 5 HOH A 2 603 2 HOH HOH . E 5 HOH A 3 604 3 HOH HOH . E 5 HOH A 4 605 4 HOH HOH . E 5 HOH A 5 606 5 HOH HOH . E 5 HOH A 6 607 7 HOH HOH . E 5 HOH A 7 608 8 HOH HOH . E 5 HOH A 8 609 9 HOH HOH . E 5 HOH A 9 610 10 HOH HOH . E 5 HOH A 10 611 11 HOH HOH . E 5 HOH A 11 612 12 HOH HOH . E 5 HOH A 12 613 13 HOH HOH . E 5 HOH A 13 614 14 HOH HOH . E 5 HOH A 14 615 15 HOH HOH . E 5 HOH A 15 616 16 HOH HOH . E 5 HOH A 16 617 17 HOH HOH . E 5 HOH A 17 618 18 HOH HOH . E 5 HOH A 18 619 19 HOH HOH . E 5 HOH A 19 620 20 HOH HOH . E 5 HOH A 20 621 21 HOH HOH . E 5 HOH A 21 622 22 HOH HOH . E 5 HOH A 22 623 23 HOH HOH . E 5 HOH A 23 624 24 HOH HOH . E 5 HOH A 24 625 25 HOH HOH . E 5 HOH A 25 626 26 HOH HOH . E 5 HOH A 26 627 27 HOH HOH . E 5 HOH A 27 628 28 HOH HOH . E 5 HOH A 28 629 29 HOH HOH . E 5 HOH A 29 630 30 HOH HOH . E 5 HOH A 30 631 31 HOH HOH . E 5 HOH A 31 632 32 HOH HOH . E 5 HOH A 32 633 33 HOH HOH . E 5 HOH A 33 634 34 HOH HOH . E 5 HOH A 34 635 35 HOH HOH . E 5 HOH A 35 636 36 HOH HOH . E 5 HOH A 36 637 37 HOH HOH . E 5 HOH A 37 638 38 HOH HOH . E 5 HOH A 38 639 39 HOH HOH . E 5 HOH A 39 640 40 HOH HOH . E 5 HOH A 40 641 43 HOH HOH . E 5 HOH A 41 642 44 HOH HOH . E 5 HOH A 42 643 45 HOH HOH . E 5 HOH A 43 644 46 HOH HOH . E 5 HOH A 44 645 47 HOH HOH . E 5 HOH A 45 646 49 HOH HOH . E 5 HOH A 46 647 50 HOH HOH . E 5 HOH A 47 648 51 HOH HOH . E 5 HOH A 48 649 52 HOH HOH . E 5 HOH A 49 650 53 HOH HOH . E 5 HOH A 50 651 54 HOH HOH . E 5 HOH A 51 652 55 HOH HOH . E 5 HOH A 52 653 57 HOH HOH . E 5 HOH A 53 654 58 HOH HOH . E 5 HOH A 54 655 60 HOH HOH . E 5 HOH A 55 656 61 HOH HOH . E 5 HOH A 56 657 62 HOH HOH . E 5 HOH A 57 658 64 HOH HOH . E 5 HOH A 58 659 65 HOH HOH . E 5 HOH A 59 660 66 HOH HOH . E 5 HOH A 60 661 67 HOH HOH . E 5 HOH A 61 662 68 HOH HOH . E 5 HOH A 62 663 69 HOH HOH . E 5 HOH A 63 664 70 HOH HOH . E 5 HOH A 64 665 71 HOH HOH . E 5 HOH A 65 666 72 HOH HOH . E 5 HOH A 66 667 73 HOH HOH . E 5 HOH A 67 668 74 HOH HOH . E 5 HOH A 68 669 76 HOH HOH . E 5 HOH A 69 670 77 HOH HOH . E 5 HOH A 70 671 78 HOH HOH . E 5 HOH A 71 672 79 HOH HOH . E 5 HOH A 72 673 81 HOH HOH . E 5 HOH A 73 674 82 HOH HOH . E 5 HOH A 74 675 84 HOH HOH . E 5 HOH A 75 676 85 HOH HOH . E 5 HOH A 76 677 86 HOH HOH . E 5 HOH A 77 678 87 HOH HOH . E 5 HOH A 78 679 88 HOH HOH . E 5 HOH A 79 680 89 HOH HOH . E 5 HOH A 80 681 90 HOH HOH . E 5 HOH A 81 682 91 HOH HOH . E 5 HOH A 82 683 93 HOH HOH . E 5 HOH A 83 684 94 HOH HOH . E 5 HOH A 84 685 95 HOH HOH . E 5 HOH A 85 686 96 HOH HOH . E 5 HOH A 86 687 97 HOH HOH . E 5 HOH A 87 688 99 HOH HOH . E 5 HOH A 88 689 100 HOH HOH . E 5 HOH A 89 690 102 HOH HOH . E 5 HOH A 90 691 103 HOH HOH . E 5 HOH A 91 692 105 HOH HOH . E 5 HOH A 92 693 106 HOH HOH . E 5 HOH A 93 694 107 HOH HOH . E 5 HOH A 94 695 110 HOH HOH . E 5 HOH A 95 696 111 HOH HOH . E 5 HOH A 96 697 112 HOH HOH . E 5 HOH A 97 698 113 HOH HOH . E 5 HOH A 98 699 114 HOH HOH . E 5 HOH A 99 700 115 HOH HOH . E 5 HOH A 100 701 116 HOH HOH . E 5 HOH A 101 702 117 HOH HOH . E 5 HOH A 102 703 118 HOH HOH . E 5 HOH A 103 704 119 HOH HOH . E 5 HOH A 104 705 120 HOH HOH . E 5 HOH A 105 706 121 HOH HOH . E 5 HOH A 106 707 122 HOH HOH . E 5 HOH A 107 708 125 HOH HOH . E 5 HOH A 108 709 127 HOH HOH . E 5 HOH A 109 710 128 HOH HOH . E 5 HOH A 110 711 129 HOH HOH . E 5 HOH A 111 712 130 HOH HOH . E 5 HOH A 112 713 131 HOH HOH . E 5 HOH A 113 714 132 HOH HOH . E 5 HOH A 114 715 133 HOH HOH . E 5 HOH A 115 716 137 HOH HOH . E 5 HOH A 116 717 138 HOH HOH . E 5 HOH A 117 718 139 HOH HOH . E 5 HOH A 118 719 141 HOH HOH . E 5 HOH A 119 720 142 HOH HOH . E 5 HOH A 120 721 145 HOH HOH . E 5 HOH A 121 722 146 HOH HOH . E 5 HOH A 122 723 147 HOH HOH . E 5 HOH A 123 724 149 HOH HOH . E 5 HOH A 124 725 150 HOH HOH . E 5 HOH A 125 726 151 HOH HOH . E 5 HOH A 126 727 153 HOH HOH . E 5 HOH A 127 728 154 HOH HOH . E 5 HOH A 128 729 156 HOH HOH . E 5 HOH A 129 730 157 HOH HOH . E 5 HOH A 130 731 158 HOH HOH . E 5 HOH A 131 732 162 HOH HOH . E 5 HOH A 132 733 163 HOH HOH . E 5 HOH A 133 734 164 HOH HOH . E 5 HOH A 134 735 165 HOH HOH . E 5 HOH A 135 736 166 HOH HOH . E 5 HOH A 136 737 167 HOH HOH . E 5 HOH A 137 738 168 HOH HOH . E 5 HOH A 138 739 169 HOH HOH . E 5 HOH A 139 740 170 HOH HOH . E 5 HOH A 140 741 171 HOH HOH . E 5 HOH A 141 742 172 HOH HOH . E 5 HOH A 142 743 173 HOH HOH . E 5 HOH A 143 744 175 HOH HOH . E 5 HOH A 144 745 177 HOH HOH . E 5 HOH A 145 746 179 HOH HOH . E 5 HOH A 146 747 181 HOH HOH . E 5 HOH A 147 748 182 HOH HOH . E 5 HOH A 148 749 183 HOH HOH . E 5 HOH A 149 750 185 HOH HOH . E 5 HOH A 150 751 186 HOH HOH . E 5 HOH A 151 752 188 HOH HOH . E 5 HOH A 152 753 191 HOH HOH . E 5 HOH A 153 754 193 HOH HOH . E 5 HOH A 154 755 194 HOH HOH . E 5 HOH A 155 756 195 HOH HOH . E 5 HOH A 156 757 196 HOH HOH . E 5 HOH A 157 758 197 HOH HOH . E 5 HOH A 158 759 198 HOH HOH . E 5 HOH A 159 760 199 HOH HOH . E 5 HOH A 160 761 200 HOH HOH . E 5 HOH A 161 762 201 HOH HOH . E 5 HOH A 162 763 202 HOH HOH . E 5 HOH A 163 764 206 HOH HOH . E 5 HOH A 164 765 208 HOH HOH . E 5 HOH A 165 766 212 HOH HOH . E 5 HOH A 166 767 216 HOH HOH . E 5 HOH A 167 768 222 HOH HOH . E 5 HOH A 168 769 224 HOH HOH . E 5 HOH A 169 770 226 HOH HOH . E 5 HOH A 170 771 227 HOH HOH . E 5 HOH A 171 772 228 HOH HOH . E 5 HOH A 172 773 229 HOH HOH . E 5 HOH A 173 774 230 HOH HOH . E 5 HOH A 174 775 231 HOH HOH . E 5 HOH A 175 776 232 HOH HOH . E 5 HOH A 176 777 233 HOH HOH . E 5 HOH A 177 778 234 HOH HOH . E 5 HOH A 178 779 236 HOH HOH . E 5 HOH A 179 780 237 HOH HOH . E 5 HOH A 180 781 238 HOH HOH . E 5 HOH A 181 782 239 HOH HOH . E 5 HOH A 182 783 241 HOH HOH . E 5 HOH A 183 784 243 HOH HOH . E 5 HOH A 184 785 246 HOH HOH . E 5 HOH A 185 786 247 HOH HOH . E 5 HOH A 186 787 248 HOH HOH . E 5 HOH A 187 788 249 HOH HOH . E 5 HOH A 188 789 250 HOH HOH . E 5 HOH A 189 790 251 HOH HOH . E 5 HOH A 190 791 255 HOH HOH . E 5 HOH A 191 792 257 HOH HOH . E 5 HOH A 192 793 258 HOH HOH . E 5 HOH A 193 794 259 HOH HOH . E 5 HOH A 194 795 260 HOH HOH . E 5 HOH A 195 796 262 HOH HOH . E 5 HOH A 196 797 264 HOH HOH . E 5 HOH A 197 798 267 HOH HOH . E 5 HOH A 198 799 272 HOH HOH . E 5 HOH A 199 800 274 HOH HOH . E 5 HOH A 200 801 275 HOH HOH . E 5 HOH A 201 802 277 HOH HOH . E 5 HOH A 202 803 278 HOH HOH . E 5 HOH A 203 804 281 HOH HOH . E 5 HOH A 204 805 287 HOH HOH . E 5 HOH A 205 806 292 HOH HOH . E 5 HOH A 206 807 296 HOH HOH . E 5 HOH A 207 808 297 HOH HOH . E 5 HOH A 208 809 299 HOH HOH . E 5 HOH A 209 810 304 HOH HOH . E 5 HOH A 210 811 311 HOH HOH . E 5 HOH A 211 812 320 HOH HOH . E 5 HOH A 212 813 324 HOH HOH . E 5 HOH A 213 814 325 HOH HOH . E 5 HOH A 214 815 328 HOH HOH . E 5 HOH A 215 816 329 HOH HOH . E 5 HOH A 216 817 332 HOH HOH . E 5 HOH A 217 818 333 HOH HOH . E 5 HOH A 218 819 334 HOH HOH . E 5 HOH A 219 820 341 HOH HOH . E 5 HOH A 220 821 342 HOH HOH . E 5 HOH A 221 822 344 HOH HOH . E 5 HOH A 222 823 351 HOH HOH . E 5 HOH A 223 824 354 HOH HOH . E 5 HOH A 224 825 357 HOH HOH . E 5 HOH A 225 826 358 HOH HOH . E 5 HOH A 226 827 359 HOH HOH . E 5 HOH A 227 828 360 HOH HOH . E 5 HOH A 228 829 362 HOH HOH . E 5 HOH A 229 830 370 HOH HOH . E 5 HOH A 230 831 371 HOH HOH . E 5 HOH A 231 832 373 HOH HOH . E 5 HOH A 232 833 375 HOH HOH . E 5 HOH A 233 834 377 HOH HOH . E 5 HOH A 234 835 378 HOH HOH . E 5 HOH A 235 836 382 HOH HOH . E 5 HOH A 236 837 383 HOH HOH . E 5 HOH A 237 838 384 HOH HOH . E 5 HOH A 238 839 385 HOH HOH . E 5 HOH A 239 840 389 HOH HOH . E 5 HOH A 240 841 391 HOH HOH . E 5 HOH A 241 842 392 HOH HOH . E 5 HOH A 242 843 394 HOH HOH . E 5 HOH A 243 844 396 HOH HOH . E 5 HOH A 244 845 400 HOH HOH . E 5 HOH A 245 846 401 HOH HOH . E 5 HOH A 246 847 403 HOH HOH . E 5 HOH A 247 848 404 HOH HOH . E 5 HOH A 248 849 405 HOH HOH . E 5 HOH A 249 850 406 HOH HOH . E 5 HOH A 250 851 408 HOH HOH . E 5 HOH A 251 852 409 HOH HOH . F 5 HOH B 1 204 204 HOH HOH . F 5 HOH B 2 214 214 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 0.339 25.949 18.628 1 49.51 ? C1 GOL 601 A 1 HETATM 2 O O1 GOL . . . D 4 1.228 26.718 19.453 1 54.02 ? O1 GOL 601 A 1 HETATM 3 C C2 GOL . . . D 4 -1.123 26.316 18.756 1 48.46 ? C2 GOL 601 A 1 HETATM 4 O O2 GOL . . . D 4 -1.571 27.327 17.932 1 42.3 ? O2 GOL 601 A 1 HETATM 5 C C3 GOL . . . D 4 -1.996 25.692 19.562 1 45.24 ? C3 GOL 601 A 1 HETATM 6 O O3 GOL . . . D 4 -3.31 26.086 19.592 1 46.72 ? O3 GOL 601 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #