data_2FWJ # _model_server_result.job_id XivXikJtePswk6mbOC_7gg _model_server_result.datetime_utc '2024-11-20 17:45:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fwj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 2FWJ # _exptl.entry_id 2FWJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 295.186 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-AMINOIMIDAZOLE RIBONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2FWJ _cell.length_a 99.199 _cell.length_b 99.199 _cell.length_c 164.389 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FWJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS octameric 8 author_and_software_defined_assembly 1 PISA hexadecameric 16 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1,2,3,4 A,B,C,D,E 2 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 99.199 99.199 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 99.199 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 99.199 0 5 'crystal symmetry operation' 5_653 -x+1,y,-z-2 -1 0 0 0 1 0 0 0 -1 99.199 0 -328.778 6 'crystal symmetry operation' 6_563 x,-y+1,-z-2 1 0 0 0 -1 0 0 0 -1 0 99.199 -328.778 7 'crystal symmetry operation' 7_553 y,x,-z-2 0 1 0 1 0 0 0 0 -1 0 0 -328.778 8 'crystal symmetry operation' 8_663 -y+1,-x+1,-z-2 0 -1 0 -1 0 0 0 0 -1 99.199 99.199 -328.778 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H14 N3 O7 P' _chem_comp.formula_weight 295.186 _chem_comp.id AIR _chem_comp.mon_nstd_flag . _chem_comp.name '5-AMINOIMIDAZOLE RIBONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 AIR sing 1 n y N1 C5 AIR sing 2 n y N1 C1' AIR sing 3 n n C2 N3 AIR doub 4 n y C2 HC2 AIR sing 5 n n N3 C4 AIR sing 6 n y C4 C5 AIR doub 7 n y C4 HC4 AIR sing 8 n n C5 N6 AIR sing 9 n n N6 HN61 AIR sing 10 n n N6 HN62 AIR sing 11 n n C1' C2' AIR sing 12 n n C1' O4' AIR sing 13 n n C1' HC1' AIR sing 14 n n C2' C3' AIR sing 15 n n C2' O2' AIR sing 16 n n C2' HC2' AIR sing 17 n n C3' C4' AIR sing 18 n n C3' O3' AIR sing 19 n n C3' HC3' AIR sing 20 n n C4' O4' AIR sing 21 n n C4' C5' AIR sing 22 n n C4' HC4' AIR sing 23 n n O2' "HO'2" AIR sing 24 n n O3' "HO'3" AIR sing 25 n n C5' O5' AIR sing 26 n n C5' HC51 AIR sing 27 n n C5' HC52 AIR sing 28 n n O5' P AIR sing 29 n n P O6 AIR sing 30 n n P O7 AIR sing 31 n n P O8 AIR doub 32 n n O6 HO6 AIR sing 33 n n O7 HO7 AIR sing 34 n n # _atom_sites.entry_id 2FWJ _atom_sites.fract_transf_matrix[1][1] 0.010081 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010081 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006083 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AIR A 1 1001 1001 AIR AIR . D 3 HOH A 1 1002 1 HOH HOH . D 3 HOH A 2 1003 2 HOH HOH . D 3 HOH A 3 1004 6 HOH HOH . D 3 HOH A 4 1005 9 HOH HOH . D 3 HOH A 5 1006 10 HOH HOH . D 3 HOH A 6 1007 11 HOH HOH . D 3 HOH A 7 1008 12 HOH HOH . D 3 HOH A 8 1009 15 HOH HOH . D 3 HOH A 9 1010 16 HOH HOH . D 3 HOH A 10 1011 21 HOH HOH . D 3 HOH A 11 1012 22 HOH HOH . D 3 HOH A 12 1013 23 HOH HOH . D 3 HOH A 13 1014 24 HOH HOH . D 3 HOH A 14 1015 25 HOH HOH . D 3 HOH A 15 1016 27 HOH HOH . D 3 HOH A 16 1017 28 HOH HOH . D 3 HOH A 17 1018 30 HOH HOH . D 3 HOH A 18 1019 34 HOH HOH . D 3 HOH A 19 1020 35 HOH HOH . D 3 HOH A 20 1021 36 HOH HOH . D 3 HOH A 21 1022 37 HOH HOH . D 3 HOH A 22 1023 38 HOH HOH . D 3 HOH A 23 1024 41 HOH HOH . D 3 HOH A 24 1025 42 HOH HOH . D 3 HOH A 25 1026 44 HOH HOH . D 3 HOH A 26 1027 46 HOH HOH . D 3 HOH A 27 1028 47 HOH HOH . D 3 HOH A 28 1029 48 HOH HOH . D 3 HOH A 29 1030 49 HOH HOH . D 3 HOH A 30 1031 52 HOH HOH . D 3 HOH A 31 1032 55 HOH HOH . D 3 HOH A 32 1033 56 HOH HOH . D 3 HOH A 33 1034 57 HOH HOH . D 3 HOH A 34 1035 58 HOH HOH . D 3 HOH A 35 1036 59 HOH HOH . D 3 HOH A 36 1037 60 HOH HOH . D 3 HOH A 37 1038 64 HOH HOH . D 3 HOH A 38 1039 65 HOH HOH . D 3 HOH A 39 1040 67 HOH HOH . D 3 HOH A 40 1041 68 HOH HOH . D 3 HOH A 41 1042 69 HOH HOH . D 3 HOH A 42 1043 70 HOH HOH . D 3 HOH A 43 1044 72 HOH HOH . D 3 HOH A 44 1045 76 HOH HOH . D 3 HOH A 45 1046 79 HOH HOH . D 3 HOH A 46 1047 80 HOH HOH . D 3 HOH A 47 1048 81 HOH HOH . D 3 HOH A 48 1049 82 HOH HOH . D 3 HOH A 49 1050 85 HOH HOH . D 3 HOH A 50 1051 89 HOH HOH . D 3 HOH A 51 1052 90 HOH HOH . D 3 HOH A 52 1053 93 HOH HOH . D 3 HOH A 53 1054 95 HOH HOH . D 3 HOH A 54 1055 96 HOH HOH . D 3 HOH A 55 1056 99 HOH HOH . D 3 HOH A 56 1057 103 HOH HOH . D 3 HOH A 57 1058 105 HOH HOH . D 3 HOH A 58 1059 108 HOH HOH . D 3 HOH A 59 1060 109 HOH HOH . D 3 HOH A 60 1061 110 HOH HOH . D 3 HOH A 61 1062 111 HOH HOH . D 3 HOH A 62 1063 112 HOH HOH . D 3 HOH A 63 1064 114 HOH HOH . D 3 HOH A 64 1065 115 HOH HOH . D 3 HOH A 65 1066 116 HOH HOH . D 3 HOH A 66 1067 118 HOH HOH . D 3 HOH A 67 1068 121 HOH HOH . D 3 HOH A 68 1069 122 HOH HOH . D 3 HOH A 69 1070 124 HOH HOH . D 3 HOH A 70 1071 127 HOH HOH . D 3 HOH A 71 1072 128 HOH HOH . D 3 HOH A 72 1073 129 HOH HOH . D 3 HOH A 73 1074 131 HOH HOH . D 3 HOH A 74 1075 132 HOH HOH . D 3 HOH A 75 1076 133 HOH HOH . D 3 HOH A 76 1077 136 HOH HOH . D 3 HOH A 77 1078 137 HOH HOH . D 3 HOH A 78 1079 139 HOH HOH . D 3 HOH A 79 1080 141 HOH HOH . D 3 HOH A 80 1081 142 HOH HOH . D 3 HOH A 81 1082 145 HOH HOH . D 3 HOH A 82 1083 146 HOH HOH . D 3 HOH A 83 1084 149 HOH HOH . D 3 HOH A 84 1085 150 HOH HOH . D 3 HOH A 85 1086 151 HOH HOH . D 3 HOH A 86 1087 152 HOH HOH . D 3 HOH A 87 1088 153 HOH HOH . D 3 HOH A 88 1089 157 HOH HOH . D 3 HOH A 89 1090 161 HOH HOH . D 3 HOH A 90 1091 163 HOH HOH . D 3 HOH A 91 1092 164 HOH HOH . D 3 HOH A 92 1093 167 HOH HOH . D 3 HOH A 93 1094 171 HOH HOH . D 3 HOH A 94 1095 172 HOH HOH . D 3 HOH A 95 1096 174 HOH HOH . D 3 HOH A 96 1097 176 HOH HOH . D 3 HOH A 97 1098 177 HOH HOH . D 3 HOH A 98 1099 178 HOH HOH . D 3 HOH A 99 1100 179 HOH HOH . D 3 HOH A 100 1101 183 HOH HOH . D 3 HOH A 101 1102 185 HOH HOH . D 3 HOH A 102 1103 186 HOH HOH . D 3 HOH A 103 1104 189 HOH HOH . D 3 HOH A 104 1105 196 HOH HOH . D 3 HOH A 105 1106 197 HOH HOH . D 3 HOH A 106 1107 198 HOH HOH . E 3 HOH B 1 183 3 HOH HOH . E 3 HOH B 2 184 4 HOH HOH . E 3 HOH B 3 185 5 HOH HOH . E 3 HOH B 4 186 7 HOH HOH . E 3 HOH B 5 187 8 HOH HOH . E 3 HOH B 6 188 13 HOH HOH . E 3 HOH B 7 189 14 HOH HOH . E 3 HOH B 8 190 17 HOH HOH . E 3 HOH B 9 191 18 HOH HOH . E 3 HOH B 10 192 19 HOH HOH . E 3 HOH B 11 193 20 HOH HOH . E 3 HOH B 12 194 26 HOH HOH . E 3 HOH B 13 195 29 HOH HOH . E 3 HOH B 14 196 31 HOH HOH . E 3 HOH B 15 197 32 HOH HOH . E 3 HOH B 16 198 33 HOH HOH . E 3 HOH B 17 199 39 HOH HOH . E 3 HOH B 18 200 40 HOH HOH . E 3 HOH B 19 201 43 HOH HOH . E 3 HOH B 20 202 45 HOH HOH . E 3 HOH B 21 203 50 HOH HOH . E 3 HOH B 22 204 51 HOH HOH . E 3 HOH B 23 205 53 HOH HOH . E 3 HOH B 24 206 54 HOH HOH . E 3 HOH B 25 207 61 HOH HOH . E 3 HOH B 26 208 62 HOH HOH . E 3 HOH B 27 209 63 HOH HOH . E 3 HOH B 28 210 66 HOH HOH . E 3 HOH B 29 211 71 HOH HOH . E 3 HOH B 30 212 73 HOH HOH . E 3 HOH B 31 213 74 HOH HOH . E 3 HOH B 32 214 75 HOH HOH . E 3 HOH B 33 215 77 HOH HOH . E 3 HOH B 34 216 78 HOH HOH . E 3 HOH B 35 217 83 HOH HOH . E 3 HOH B 36 218 84 HOH HOH . E 3 HOH B 37 219 86 HOH HOH . E 3 HOH B 38 220 87 HOH HOH . E 3 HOH B 39 221 88 HOH HOH . E 3 HOH B 40 222 91 HOH HOH . E 3 HOH B 41 223 92 HOH HOH . E 3 HOH B 42 224 94 HOH HOH . E 3 HOH B 43 225 97 HOH HOH . E 3 HOH B 44 226 98 HOH HOH . E 3 HOH B 45 227 100 HOH HOH . E 3 HOH B 46 228 101 HOH HOH . E 3 HOH B 47 229 102 HOH HOH . E 3 HOH B 48 230 104 HOH HOH . E 3 HOH B 49 231 106 HOH HOH . E 3 HOH B 50 232 107 HOH HOH . E 3 HOH B 51 233 113 HOH HOH . E 3 HOH B 52 234 117 HOH HOH . E 3 HOH B 53 235 119 HOH HOH . E 3 HOH B 54 236 120 HOH HOH . E 3 HOH B 55 237 123 HOH HOH . E 3 HOH B 56 238 125 HOH HOH . E 3 HOH B 57 239 126 HOH HOH . E 3 HOH B 58 240 130 HOH HOH . E 3 HOH B 59 241 134 HOH HOH . E 3 HOH B 60 242 135 HOH HOH . E 3 HOH B 61 243 138 HOH HOH . E 3 HOH B 62 244 140 HOH HOH . E 3 HOH B 63 245 143 HOH HOH . E 3 HOH B 64 246 144 HOH HOH . E 3 HOH B 65 247 147 HOH HOH . E 3 HOH B 66 248 148 HOH HOH . E 3 HOH B 67 249 154 HOH HOH . E 3 HOH B 68 250 155 HOH HOH . E 3 HOH B 69 251 156 HOH HOH . E 3 HOH B 70 252 158 HOH HOH . E 3 HOH B 71 253 159 HOH HOH . E 3 HOH B 72 254 160 HOH HOH . E 3 HOH B 73 255 162 HOH HOH . E 3 HOH B 74 256 165 HOH HOH . E 3 HOH B 75 257 166 HOH HOH . E 3 HOH B 76 258 168 HOH HOH . E 3 HOH B 77 259 169 HOH HOH . E 3 HOH B 78 260 170 HOH HOH . E 3 HOH B 79 261 173 HOH HOH . E 3 HOH B 80 262 175 HOH HOH . E 3 HOH B 81 263 180 HOH HOH . E 3 HOH B 82 264 181 HOH HOH . E 3 HOH B 83 265 182 HOH HOH . E 3 HOH B 84 266 184 HOH HOH . E 3 HOH B 85 267 187 HOH HOH . E 3 HOH B 86 268 188 HOH HOH . E 3 HOH B 87 269 190 HOH HOH . E 3 HOH B 88 270 191 HOH HOH . E 3 HOH B 89 271 192 HOH HOH . E 3 HOH B 90 272 193 HOH HOH . E 3 HOH B 91 273 194 HOH HOH . E 3 HOH B 92 274 195 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 AIR . . . C 2 33.595 36.505 -131.634 1 39.02 ? N1 AIR 1001 A 1 HETATM 2 C C2 AIR . . . C 2 32.817 35.6 -131.055 1 39.64 ? C2 AIR 1001 A 1 HETATM 3 N N3 AIR . . . C 2 32.126 34.944 -131.99 1 42.68 ? N3 AIR 1001 A 1 HETATM 4 C C4 AIR . . . C 2 32.481 35.443 -133.168 1 40.65 ? C4 AIR 1001 A 1 HETATM 5 C C5 AIR . . . C 2 33.389 36.389 -132.946 1 40.47 ? C5 AIR 1001 A 1 HETATM 6 N N6 AIR . . . C 2 34.023 37.04 -133.917 1 38.85 ? N6 AIR 1001 A 1 HETATM 7 C C1' AIR . . . C 2 34.53 37.444 -130.954 1 37.19 ? C1' AIR 1001 A 1 HETATM 8 C C2' AIR . . . C 2 33.857 38.375 -129.94 1 34.23 ? C2' AIR 1001 A 1 HETATM 9 C C3' AIR . . . C 2 34.996 38.683 -128.962 1 34.78 ? C3' AIR 1001 A 1 HETATM 10 C C4' AIR . . . C 2 36.128 37.733 -129.367 1 36.04 ? C4' AIR 1001 A 1 HETATM 11 O O4' AIR . . . C 2 35.487 36.722 -130.163 1 35.94 ? O4' AIR 1001 A 1 HETATM 12 O O2' AIR . . . C 2 33.374 39.562 -130.576 1 33.23 ? O2' AIR 1001 A 1 HETATM 13 O O3' AIR . . . C 2 35.442 40.039 -129.055 1 32.95 ? O3' AIR 1001 A 1 HETATM 14 C C5' AIR . . . C 2 36.767 37.113 -128.12 1 36.79 ? C5' AIR 1001 A 1 HETATM 15 O O5' AIR . . . C 2 35.82 36.247 -127.48 1 34.63 ? O5' AIR 1001 A 1 HETATM 16 P P AIR . . . C 2 36.166 35.533 -126.075 1 35.77 ? P AIR 1001 A 1 HETATM 17 O O6 AIR . . . C 2 37.229 34.364 -126.411 1 34.16 ? O6 AIR 1001 A 1 HETATM 18 O O7 AIR . . . C 2 34.808 34.796 -125.601 1 35.96 ? O7 AIR 1001 A 1 HETATM 19 O O8 AIR . . . C 2 36.687 36.502 -125.081 1 33.97 ? O8 AIR 1001 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #