data_2FXL # _model_server_result.job_id b1Y0lsqLKWeXCUoYHkoGtQ _model_server_result.datetime_utc '2025-03-06 06:16:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fxl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":302}' # _entry.id 2FXL # _exptl.entry_id 2FXL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.1 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(2,5-DIOXO-2,5-DIHYDRO-1H-IMIDAZOL-4-YL)UREA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2FXL _cell.length_a 80.364 _cell.length_b 96.086 _cell.length_c 105.368 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FXL _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 80.364 96.086 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 80.364 0 105.368 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 96.086 105.368 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id SAC _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SAC _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id ALA _struct_conn.ptnr2_label_seq_id 2 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ALA _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.328 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H4 N4 O3' _chem_comp.formula_weight 156.1 _chem_comp.id 2AL _chem_comp.mon_nstd_flag . _chem_comp.name 1-(2,5-DIOXO-2,5-DIHYDRO-1H-IMIDAZOL-4-YL)UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ALLANTOIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 2AL sing 1 n n C4 N9 2AL doub 2 n n C4 N3 2AL sing 3 n n C5 O5 2AL doub 4 n n C5 N7 2AL sing 5 n n N7 C8 2AL sing 6 n n N7 HN7 2AL sing 7 n n C8 O8 2AL doub 8 n n C8 N9 2AL sing 9 n n N3 C2 2AL sing 10 n n N3 HN3 2AL sing 11 n n C2 N1 2AL sing 12 n n C2 O2 2AL doub 13 n n N1 HN11 2AL sing 14 n n N1 HN12 2AL sing 15 n n # _atom_sites.entry_id 2FXL _atom_sites.fract_transf_matrix[1][1] 0.012443 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010407 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009491 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2AL A 1 302 300 2AL 2AL . C 3 HOH A 1 303 301 HOH HOH . C 3 HOH A 2 304 302 HOH HOH . C 3 HOH A 3 305 303 HOH HOH . C 3 HOH A 4 306 304 HOH HOH . C 3 HOH A 5 307 305 HOH HOH . C 3 HOH A 6 308 306 HOH HOH . C 3 HOH A 7 309 307 HOH HOH . C 3 HOH A 8 310 308 HOH HOH . C 3 HOH A 9 311 309 HOH HOH . C 3 HOH A 10 312 310 HOH HOH . C 3 HOH A 11 313 311 HOH HOH . C 3 HOH A 12 314 312 HOH HOH . C 3 HOH A 13 315 313 HOH HOH . C 3 HOH A 14 316 314 HOH HOH . C 3 HOH A 15 317 315 HOH HOH . C 3 HOH A 16 318 316 HOH HOH . C 3 HOH A 17 319 317 HOH HOH . C 3 HOH A 18 320 318 HOH HOH . C 3 HOH A 19 321 319 HOH HOH . C 3 HOH A 20 322 320 HOH HOH . C 3 HOH A 21 323 321 HOH HOH . C 3 HOH A 22 324 322 HOH HOH . C 3 HOH A 23 325 323 HOH HOH . C 3 HOH A 24 326 324 HOH HOH . C 3 HOH A 25 327 325 HOH HOH . C 3 HOH A 26 328 326 HOH HOH . C 3 HOH A 27 329 327 HOH HOH . C 3 HOH A 28 330 328 HOH HOH . C 3 HOH A 29 331 329 HOH HOH . C 3 HOH A 30 332 330 HOH HOH . C 3 HOH A 31 333 331 HOH HOH . C 3 HOH A 32 334 332 HOH HOH . C 3 HOH A 33 335 333 HOH HOH . C 3 HOH A 34 336 334 HOH HOH . C 3 HOH A 35 337 335 HOH HOH . C 3 HOH A 36 338 336 HOH HOH . C 3 HOH A 37 339 337 HOH HOH . C 3 HOH A 38 340 338 HOH HOH . C 3 HOH A 39 341 339 HOH HOH . C 3 HOH A 40 342 340 HOH HOH . C 3 HOH A 41 343 341 HOH HOH . C 3 HOH A 42 344 342 HOH HOH . C 3 HOH A 43 345 343 HOH HOH . C 3 HOH A 44 346 344 HOH HOH . C 3 HOH A 45 347 345 HOH HOH . C 3 HOH A 46 348 346 HOH HOH . C 3 HOH A 47 349 347 HOH HOH . C 3 HOH A 48 350 348 HOH HOH . C 3 HOH A 49 351 349 HOH HOH . C 3 HOH A 50 352 350 HOH HOH . C 3 HOH A 51 353 351 HOH HOH . C 3 HOH A 52 354 352 HOH HOH . C 3 HOH A 53 355 353 HOH HOH . C 3 HOH A 54 356 354 HOH HOH . C 3 HOH A 55 357 355 HOH HOH . C 3 HOH A 56 358 356 HOH HOH . C 3 HOH A 57 359 357 HOH HOH . C 3 HOH A 58 360 358 HOH HOH . C 3 HOH A 59 361 359 HOH HOH . C 3 HOH A 60 362 360 HOH HOH . C 3 HOH A 61 363 361 HOH HOH . C 3 HOH A 62 364 362 HOH HOH . C 3 HOH A 63 365 363 HOH HOH . C 3 HOH A 64 366 364 HOH HOH . C 3 HOH A 65 367 365 HOH HOH . C 3 HOH A 66 368 366 HOH HOH . C 3 HOH A 67 369 367 HOH HOH . C 3 HOH A 68 370 368 HOH HOH . C 3 HOH A 69 371 369 HOH HOH . C 3 HOH A 70 372 370 HOH HOH . C 3 HOH A 71 373 371 HOH HOH . C 3 HOH A 72 374 372 HOH HOH . C 3 HOH A 73 375 373 HOH HOH . C 3 HOH A 74 376 374 HOH HOH . C 3 HOH A 75 377 375 HOH HOH . C 3 HOH A 76 378 376 HOH HOH . C 3 HOH A 77 379 377 HOH HOH . C 3 HOH A 78 380 378 HOH HOH . C 3 HOH A 79 381 379 HOH HOH . C 3 HOH A 80 382 380 HOH HOH . C 3 HOH A 81 383 381 HOH HOH . C 3 HOH A 82 384 382 HOH HOH . C 3 HOH A 83 385 383 HOH HOH . C 3 HOH A 84 386 384 HOH HOH . C 3 HOH A 85 387 385 HOH HOH . C 3 HOH A 86 388 386 HOH HOH . C 3 HOH A 87 389 387 HOH HOH . C 3 HOH A 88 390 388 HOH HOH . C 3 HOH A 89 391 389 HOH HOH . C 3 HOH A 90 392 390 HOH HOH . C 3 HOH A 91 393 391 HOH HOH . C 3 HOH A 92 394 392 HOH HOH . C 3 HOH A 93 395 393 HOH HOH . C 3 HOH A 94 396 394 HOH HOH . C 3 HOH A 95 397 395 HOH HOH . C 3 HOH A 96 398 396 HOH HOH . C 3 HOH A 97 399 397 HOH HOH . C 3 HOH A 98 400 398 HOH HOH . C 3 HOH A 99 401 399 HOH HOH . C 3 HOH A 100 402 400 HOH HOH . C 3 HOH A 101 403 401 HOH HOH . C 3 HOH A 102 404 402 HOH HOH . C 3 HOH A 103 405 403 HOH HOH . C 3 HOH A 104 406 404 HOH HOH . C 3 HOH A 105 407 405 HOH HOH . C 3 HOH A 106 408 406 HOH HOH . C 3 HOH A 107 409 407 HOH HOH . C 3 HOH A 108 410 408 HOH HOH . C 3 HOH A 109 411 409 HOH HOH . C 3 HOH A 110 412 410 HOH HOH . C 3 HOH A 111 413 411 HOH HOH . C 3 HOH A 112 414 412 HOH HOH . C 3 HOH A 113 415 413 HOH HOH . C 3 HOH A 114 416 414 HOH HOH . C 3 HOH A 115 417 415 HOH HOH . C 3 HOH A 116 418 416 HOH HOH . C 3 HOH A 117 419 417 HOH HOH . C 3 HOH A 118 420 418 HOH HOH . C 3 HOH A 119 421 419 HOH HOH . C 3 HOH A 120 422 420 HOH HOH . C 3 HOH A 121 423 421 HOH HOH . C 3 HOH A 122 424 422 HOH HOH . C 3 HOH A 123 425 423 HOH HOH . C 3 HOH A 124 426 424 HOH HOH . C 3 HOH A 125 427 425 HOH HOH . C 3 HOH A 126 428 426 HOH HOH . C 3 HOH A 127 429 427 HOH HOH . C 3 HOH A 128 430 428 HOH HOH . C 3 HOH A 129 431 429 HOH HOH . C 3 HOH A 130 432 430 HOH HOH . C 3 HOH A 131 433 431 HOH HOH . C 3 HOH A 132 434 432 HOH HOH . C 3 HOH A 133 435 433 HOH HOH . C 3 HOH A 134 436 434 HOH HOH . C 3 HOH A 135 437 435 HOH HOH . C 3 HOH A 136 438 436 HOH HOH . C 3 HOH A 137 439 437 HOH HOH . C 3 HOH A 138 440 438 HOH HOH . C 3 HOH A 139 441 439 HOH HOH . C 3 HOH A 140 442 440 HOH HOH . C 3 HOH A 141 443 441 HOH HOH . C 3 HOH A 142 444 442 HOH HOH . C 3 HOH A 143 445 443 HOH HOH . C 3 HOH A 144 446 444 HOH HOH . C 3 HOH A 145 447 445 HOH HOH . C 3 HOH A 146 448 446 HOH HOH . C 3 HOH A 147 449 447 HOH HOH . C 3 HOH A 148 450 448 HOH HOH . C 3 HOH A 149 451 449 HOH HOH . C 3 HOH A 150 452 450 HOH HOH . C 3 HOH A 151 453 451 HOH HOH . C 3 HOH A 152 454 452 HOH HOH . C 3 HOH A 153 455 453 HOH HOH . C 3 HOH A 154 456 454 HOH HOH . C 3 HOH A 155 457 455 HOH HOH . C 3 HOH A 156 458 456 HOH HOH . C 3 HOH A 157 459 457 HOH HOH . C 3 HOH A 158 460 458 HOH HOH . C 3 HOH A 159 461 459 HOH HOH . C 3 HOH A 160 462 460 HOH HOH . C 3 HOH A 161 463 461 HOH HOH . C 3 HOH A 162 464 462 HOH HOH . C 3 HOH A 163 465 463 HOH HOH . C 3 HOH A 164 466 464 HOH HOH . C 3 HOH A 165 467 465 HOH HOH . C 3 HOH A 166 468 466 HOH HOH . C 3 HOH A 167 469 467 HOH HOH . C 3 HOH A 168 470 468 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 2AL . . . B 2 31.596 26.448 39.127 1 20.47 ? C4 2AL 302 A 1 HETATM 2 C C5 2AL . . . B 2 32.733 25.938 38.338 1 27.02 ? C5 2AL 302 A 1 HETATM 3 O O5 2AL . . . B 2 33.086 26.001 37.181 1 24.51 ? O5 2AL 302 A 1 HETATM 4 N N7 2AL . . . B 2 33.601 25.227 39.215 1 26.78 ? N7 2AL 302 A 1 HETATM 5 C C8 2AL . . . B 2 33.072 25.422 40.494 1 30.39 ? C8 2AL 302 A 1 HETATM 6 O O8 2AL . . . B 2 33.613 25.015 41.489 1 50.44 ? O8 2AL 302 A 1 HETATM 7 N N9 2AL . . . B 2 31.871 26.132 40.478 1 21.46 ? N9 2AL 302 A 1 HETATM 8 N N3 2AL . . . B 2 30.251 26.303 38.665 1 22.67 ? N3 2AL 302 A 1 HETATM 9 C C2 2AL . . . B 2 29.797 27.605 38.231 1 16.78 ? C2 2AL 302 A 1 HETATM 10 N N1 2AL . . . B 2 30.696 28.579 38.32 1 43.58 ? N1 2AL 302 A 1 HETATM 11 O O2 2AL . . . B 2 28.653 27.711 37.84 1 14.48 ? O2 2AL 302 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 11 #