data_2FYG # _model_server_result.job_id 5vRZTCM21GgH7bFlY_wNlw _model_server_result.datetime_utc '2024-11-21 16:41:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 2FYG # _exptl.entry_id 2FYG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2FYG _cell.length_a 108.874 _cell.length_b 108.874 _cell.length_c 108.874 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 70 A CYS 74 1_555 B ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc2 A SG CYS 73 A CYS 77 1_555 B ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc3 A NE2 HIS 79 A HIS 83 1_555 B ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc4 A SG CYS 86 A CYS 90 1_555 B ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc5 A SG CYS 113 A CYS 117 1_555 C ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc6 A SG CYS 116 A CYS 120 1_555 C ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc7 A SG CYS 124 A CYS 128 1_555 C ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc8 A SG CYS 126 A CYS 130 1_555 C ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2FYG _atom_sites.fract_transf_matrix[1][1] 0.009185 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009185 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 302 302 ZN ZN . C 2 ZN A 1 303 303 ZN ZN . D 3 GOL A 1 301 301 GOL GOL . E 4 HOH A 1 304 1 HOH HOH . E 4 HOH A 2 305 2 HOH HOH . E 4 HOH A 3 306 3 HOH HOH . E 4 HOH A 4 307 4 HOH HOH . E 4 HOH A 5 308 5 HOH HOH . E 4 HOH A 6 309 6 HOH HOH . E 4 HOH A 7 310 7 HOH HOH . E 4 HOH A 8 311 8 HOH HOH . E 4 HOH A 9 312 9 HOH HOH . E 4 HOH A 10 313 10 HOH HOH . E 4 HOH A 11 314 11 HOH HOH . E 4 HOH A 12 315 12 HOH HOH . E 4 HOH A 13 316 13 HOH HOH . E 4 HOH A 14 317 14 HOH HOH . E 4 HOH A 15 318 15 HOH HOH . E 4 HOH A 16 319 16 HOH HOH . E 4 HOH A 17 320 17 HOH HOH . E 4 HOH A 18 321 18 HOH HOH . E 4 HOH A 19 322 19 HOH HOH . E 4 HOH A 20 323 20 HOH HOH . E 4 HOH A 21 324 21 HOH HOH . E 4 HOH A 22 325 22 HOH HOH . E 4 HOH A 23 326 23 HOH HOH . E 4 HOH A 24 327 24 HOH HOH . E 4 HOH A 25 328 25 HOH HOH . E 4 HOH A 26 329 26 HOH HOH . E 4 HOH A 27 330 27 HOH HOH . E 4 HOH A 28 331 28 HOH HOH . E 4 HOH A 29 332 29 HOH HOH . E 4 HOH A 30 333 30 HOH HOH . E 4 HOH A 31 334 31 HOH HOH . E 4 HOH A 32 335 32 HOH HOH . E 4 HOH A 33 336 33 HOH HOH . E 4 HOH A 34 337 34 HOH HOH . E 4 HOH A 35 338 35 HOH HOH . E 4 HOH A 36 339 36 HOH HOH . E 4 HOH A 37 340 37 HOH HOH . E 4 HOH A 38 341 38 HOH HOH . E 4 HOH A 39 342 39 HOH HOH . E 4 HOH A 40 343 40 HOH HOH . E 4 HOH A 41 344 41 HOH HOH . E 4 HOH A 42 345 42 HOH HOH . E 4 HOH A 43 346 43 HOH HOH . E 4 HOH A 44 347 44 HOH HOH . E 4 HOH A 45 348 45 HOH HOH . E 4 HOH A 46 349 46 HOH HOH . E 4 HOH A 47 350 47 HOH HOH . E 4 HOH A 48 351 48 HOH HOH . E 4 HOH A 49 352 49 HOH HOH . E 4 HOH A 50 353 50 HOH HOH . E 4 HOH A 51 354 51 HOH HOH . E 4 HOH A 52 355 52 HOH HOH . E 4 HOH A 53 356 53 HOH HOH . E 4 HOH A 54 357 54 HOH HOH . E 4 HOH A 55 358 55 HOH HOH . E 4 HOH A 56 359 56 HOH HOH . E 4 HOH A 57 360 58 HOH HOH . E 4 HOH A 58 361 59 HOH HOH . E 4 HOH A 59 362 60 HOH HOH . E 4 HOH A 60 363 61 HOH HOH . E 4 HOH A 61 364 62 HOH HOH . E 4 HOH A 62 365 63 HOH HOH . E 4 HOH A 63 366 64 HOH HOH . E 4 HOH A 64 367 65 HOH HOH . E 4 HOH A 65 368 66 HOH HOH . E 4 HOH A 66 369 67 HOH HOH . E 4 HOH A 67 370 68 HOH HOH . E 4 HOH A 68 371 69 HOH HOH . E 4 HOH A 69 372 70 HOH HOH . E 4 HOH A 70 373 71 HOH HOH . E 4 HOH A 71 374 72 HOH HOH . E 4 HOH A 72 375 73 HOH HOH . E 4 HOH A 73 376 74 HOH HOH . E 4 HOH A 74 377 75 HOH HOH . E 4 HOH A 75 378 76 HOH HOH . E 4 HOH A 76 379 77 HOH HOH . E 4 HOH A 77 380 78 HOH HOH . E 4 HOH A 78 381 79 HOH HOH . E 4 HOH A 79 382 80 HOH HOH . E 4 HOH A 80 383 81 HOH HOH . E 4 HOH A 81 384 82 HOH HOH . E 4 HOH A 82 385 83 HOH HOH . E 4 HOH A 83 386 84 HOH HOH . E 4 HOH A 84 387 85 HOH HOH . E 4 HOH A 85 388 86 HOH HOH . E 4 HOH A 86 389 87 HOH HOH . E 4 HOH A 87 390 88 HOH HOH . E 4 HOH A 88 391 89 HOH HOH . E 4 HOH A 89 392 90 HOH HOH . E 4 HOH A 90 393 91 HOH HOH . E 4 HOH A 91 394 92 HOH HOH . E 4 HOH A 92 395 93 HOH HOH . E 4 HOH A 93 396 94 HOH HOH . E 4 HOH A 94 397 95 HOH HOH . E 4 HOH A 95 398 96 HOH HOH . E 4 HOH A 96 399 97 HOH HOH . E 4 HOH A 97 400 98 HOH HOH . E 4 HOH A 98 401 99 HOH HOH . E 4 HOH A 99 402 100 HOH HOH . E 4 HOH A 100 403 101 HOH HOH . E 4 HOH A 101 404 102 HOH HOH . E 4 HOH A 102 405 103 HOH HOH . E 4 HOH A 103 406 104 HOH HOH . E 4 HOH A 104 407 105 HOH HOH . E 4 HOH A 105 408 106 HOH HOH . E 4 HOH A 106 409 107 HOH HOH . E 4 HOH A 107 410 108 HOH HOH . E 4 HOH A 108 411 109 HOH HOH . E 4 HOH A 109 412 110 HOH HOH . E 4 HOH A 110 413 111 HOH HOH . E 4 HOH A 111 414 112 HOH HOH . E 4 HOH A 112 415 113 HOH HOH . E 4 HOH A 113 416 114 HOH HOH . E 4 HOH A 114 417 115 HOH HOH . E 4 HOH A 115 418 116 HOH HOH . E 4 HOH A 116 419 117 HOH HOH . E 4 HOH A 117 420 118 HOH HOH . E 4 HOH A 118 421 119 HOH HOH . E 4 HOH A 119 422 120 HOH HOH . E 4 HOH A 120 423 121 HOH HOH . E 4 HOH A 121 424 122 HOH HOH . E 4 HOH A 122 425 123 HOH HOH . E 4 HOH A 123 426 124 HOH HOH . E 4 HOH A 124 427 125 HOH HOH . E 4 HOH A 125 428 126 HOH HOH . E 4 HOH A 126 429 127 HOH HOH . E 4 HOH A 127 430 128 HOH HOH . E 4 HOH A 128 431 129 HOH HOH . E 4 HOH A 129 432 130 HOH HOH . E 4 HOH A 130 433 131 HOH HOH . E 4 HOH A 131 434 132 HOH HOH . E 4 HOH A 132 435 133 HOH HOH . E 4 HOH A 133 436 134 HOH HOH . E 4 HOH A 134 437 135 HOH HOH . E 4 HOH A 135 438 136 HOH HOH . E 4 HOH A 136 439 137 HOH HOH . E 4 HOH A 137 440 138 HOH HOH . E 4 HOH A 138 441 139 HOH HOH . E 4 HOH A 139 442 140 HOH HOH . E 4 HOH A 140 443 141 HOH HOH . E 4 HOH A 141 444 142 HOH HOH . E 4 HOH A 142 445 143 HOH HOH . E 4 HOH A 143 446 144 HOH HOH . E 4 HOH A 144 447 145 HOH HOH . E 4 HOH A 145 448 146 HOH HOH . E 4 HOH A 146 449 147 HOH HOH . E 4 HOH A 147 450 148 HOH HOH . E 4 HOH A 148 451 149 HOH HOH . E 4 HOH A 149 452 150 HOH HOH . E 4 HOH A 150 453 151 HOH HOH . E 4 HOH A 151 454 152 HOH HOH . E 4 HOH A 152 455 153 HOH HOH . E 4 HOH A 153 456 154 HOH HOH . E 4 HOH A 154 457 155 HOH HOH . E 4 HOH A 155 458 156 HOH HOH . E 4 HOH A 156 459 157 HOH HOH . E 4 HOH A 157 460 158 HOH HOH . E 4 HOH A 158 461 159 HOH HOH . E 4 HOH A 159 462 160 HOH HOH . E 4 HOH A 160 463 161 HOH HOH . E 4 HOH A 161 464 162 HOH HOH . E 4 HOH A 162 465 163 HOH HOH . E 4 HOH A 163 466 164 HOH HOH . E 4 HOH A 164 467 165 HOH HOH . E 4 HOH A 165 468 166 HOH HOH . E 4 HOH A 166 469 167 HOH HOH . E 4 HOH A 167 470 168 HOH HOH . E 4 HOH A 168 471 169 HOH HOH . E 4 HOH A 169 472 170 HOH HOH . E 4 HOH A 170 473 171 HOH HOH . E 4 HOH A 171 474 172 HOH HOH . E 4 HOH A 172 475 173 HOH HOH . E 4 HOH A 173 476 174 HOH HOH . E 4 HOH A 174 477 175 HOH HOH . E 4 HOH A 175 478 176 HOH HOH . E 4 HOH A 176 479 177 HOH HOH . E 4 HOH A 177 480 178 HOH HOH . E 4 HOH A 178 481 179 HOH HOH . E 4 HOH A 179 482 180 HOH HOH . E 4 HOH A 180 483 181 HOH HOH . E 4 HOH A 181 484 182 HOH HOH . E 4 HOH A 182 485 183 HOH HOH . E 4 HOH A 183 486 184 HOH HOH . E 4 HOH A 184 487 185 HOH HOH . E 4 HOH A 185 488 186 HOH HOH . E 4 HOH A 186 489 187 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 23.654 22.22 -4.448 1 42.32 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . D 3 24.683 21.833 -5.34 1 42.1 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . D 3 23.219 20.993 -3.644 1 42.18 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . D 3 24.227 19.998 -3.571 1 44.56 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . D 3 22.885 21.443 -2.243 1 39.05 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . D 3 21.508 21.357 -2.002 1 33.04 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #