data_2FYN # _model_server_result.job_id 1zjuiuU8mawjHjD8Ui10_g _model_server_result.datetime_utc '2024-11-24 13:54:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fyn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":200}' # _entry.id 2FYN # _exptl.entry_id 2FYN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.82 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.94 _cell.angle_gamma 90 _cell.entry_id 2FYN _cell.length_a 351.3 _cell.length_b 147.13 _cell.length_c 160.83 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FYN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 PISA hexameric 6 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 1 1 G,H,I,J,K,L,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA 2 1 M,N,O,P,Q,R,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 X N N ? 7 DA N N ? 7 JA N N ? 7 PA N N ? 7 VA N N ? 7 BB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 145 B CYS 145 1_555 B SG CYS 169 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 C SG CYS 134 C CYS 134 1_555 C SG CYS 151 C CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 E SG CYS 145 E CYS 145 1_555 E SG CYS 169 E CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 F SG CYS 134 F CYS 134 1_555 F SG CYS 151 F CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 H SG CYS 145 H CYS 145 1_555 H SG CYS 169 H CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf6 I SG CYS 134 I CYS 134 1_555 I SG CYS 151 I CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf7 K SG CYS 145 K CYS 145 1_555 K SG CYS 169 K CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf8 L SG CYS 134 L CYS 134 1_555 L SG CYS 151 L CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 N SG CYS 145 N CYS 145 1_555 N SG CYS 169 N CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf10 O SG CYS 134 O CYS 134 1_555 O SG CYS 151 O CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf11 Q SG CYS 145 Q CYS 145 1_555 Q SG CYS 169 Q CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf12 R SG CYS 134 R CYS 134 1_555 R SG CYS 151 R CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A NE2 HIS 97 A HIS 97 1_555 T FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc2 A NE2 HIS 111 A HIS 111 1_555 S FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc3 A NE2 HIS 198 A HIS 198 1_555 T FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc4 A NE2 HIS 212 A HIS 212 1_555 S FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc5 B NE2 HIS 40 B HIS 40 1_555 W FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc6 B SD MET 185 B MET 185 1_555 W FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc7 C SG CYS 129 C CYS 129 1_555 X FE1 FES . C FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc8 C ND1 HIS 131 C HIS 131 1_555 X FE2 FES . C FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc9 C SG CYS 149 C CYS 149 1_555 X FE1 FES . C FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc10 C ND1 HIS 152 C HIS 152 1_555 X FE2 FES . C FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc11 D NE2 HIS 97 D HIS 97 1_555 Z FE HEM . D HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc12 D NE2 HIS 111 D HIS 111 1_555 Y FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc13 D NE2 HIS 198 D HIS 198 1_555 Z FE HEM . D HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc14 D NE2 HIS 212 D HIS 212 1_555 Y FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc15 E NE2 HIS 40 E HIS 40 1_555 CA FE HEM . E HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc16 E SD MET 185 E MET 185 1_555 CA FE HEM . E HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc17 F SG CYS 129 F CYS 129 1_555 DA FE1 FES . F FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc18 F ND1 HIS 131 F HIS 131 1_555 DA FE2 FES . F FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc19 F SG CYS 149 F CYS 149 1_555 DA FE1 FES . F FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc20 F ND1 HIS 152 F HIS 152 1_555 DA FE2 FES . F FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc21 G NE2 HIS 97 G HIS 97 1_555 FA FE HEM . G HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc22 G NE2 HIS 111 G HIS 111 1_555 EA FE HEM . G HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc23 G NE2 HIS 198 G HIS 198 1_555 FA FE HEM . G HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc24 G NE2 HIS 212 G HIS 212 1_555 EA FE HEM . G HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc25 H NE2 HIS 40 H HIS 40 1_555 IA FE HEM . H HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc26 H SD MET 185 H MET 185 1_555 IA FE HEM . H HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc27 I SG CYS 129 I CYS 129 1_555 JA FE1 FES . I FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc28 I ND1 HIS 131 I HIS 131 1_555 JA FE2 FES . I FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc29 I SG CYS 149 I CYS 149 1_555 JA FE1 FES . I FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc30 I ND1 HIS 152 I HIS 152 1_555 JA FE2 FES . I FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc31 J NE2 HIS 97 J HIS 97 1_555 LA FE HEM . J HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc32 J NE2 HIS 111 J HIS 111 1_555 KA FE HEM . J HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc33 J NE2 HIS 198 J HIS 198 1_555 LA FE HEM . J HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc34 J NE2 HIS 212 J HIS 212 1_555 KA FE HEM . J HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc35 K NE2 HIS 40 K HIS 40 1_555 OA FE HEM . K HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc36 K SD MET 185 K MET 185 1_555 OA FE HEM . K HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc37 L SG CYS 129 L CYS 129 1_555 PA FE1 FES . L FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc38 L ND1 HIS 131 L HIS 131 1_555 PA FE2 FES . L FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc39 L SG CYS 149 L CYS 149 1_555 PA FE1 FES . L FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc40 L ND1 HIS 152 L HIS 152 1_555 PA FE2 FES . L FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc41 M NE2 HIS 97 M HIS 97 1_555 RA FE HEM . M HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc42 M NE2 HIS 111 M HIS 111 1_555 QA FE HEM . M HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc43 M NE2 HIS 198 M HIS 198 1_555 RA FE HEM . M HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc44 M NE2 HIS 212 M HIS 212 1_555 QA FE HEM . M HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc45 N NE2 HIS 40 N HIS 40 1_555 UA FE HEM . N HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc46 N SD MET 185 N MET 185 1_555 UA FE HEM . N HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc47 O SG CYS 129 O CYS 129 1_555 VA FE1 FES . O FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc48 O ND1 HIS 131 O HIS 131 1_555 VA FE2 FES . O FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc49 O SG CYS 149 O CYS 149 1_555 VA FE1 FES . O FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc50 O ND1 HIS 152 O HIS 152 1_555 VA FE2 FES . O FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc51 P NE2 HIS 97 P HIS 97 1_555 XA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc52 P NE2 HIS 111 P HIS 111 1_555 WA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc53 P NE2 HIS 198 P HIS 198 1_555 XA FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc54 P NE2 HIS 212 P HIS 212 1_555 WA FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc55 Q NE2 HIS 40 Q HIS 40 1_555 AB FE HEM . Q HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc56 Q SD MET 185 Q MET 185 1_555 AB FE HEM . Q HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc57 R SG CYS 129 R CYS 129 1_555 BB FE1 FES . R FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc58 R ND1 HIS 131 R HIS 131 1_555 BB FE2 FES . R FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc59 R SG CYS 149 R CYS 149 1_555 BB FE1 FES . R FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc60 R ND1 HIS 152 R HIS 152 1_555 BB FE2 FES . R FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 83 n n FE1 S2 FES sing 84 n n FE2 S1 FES sing 85 n n FE2 S2 FES sing 86 n n # _atom_sites.entry_id 2FYN _atom_sites.fract_transf_matrix[1][1] 0.002847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000707 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006406 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 4 HEM A 1 501 501 HEM HEM . T 4 HEM A 1 502 502 HEM HEM . U 5 SMA A 1 503 1 SMA SMA . V 6 LOP A 1 504 21 LOP LOP . W 4 HEM B 1 301 301 HEM HEM . X 7 FES C 1 200 200 FES FES . Y 4 HEM D 1 501 501 HEM HEM . Z 4 HEM D 1 502 502 HEM HEM . AA 5 SMA D 1 503 2 SMA SMA . BA 6 LOP D 1 504 22 LOP LOP . CA 4 HEM E 1 301 301 HEM HEM . DA 7 FES F 1 200 200 FES FES . EA 4 HEM G 1 501 501 HEM HEM . FA 4 HEM G 1 502 502 HEM HEM . GA 5 SMA G 1 503 3 SMA SMA . HA 6 LOP G 1 504 23 LOP LOP . IA 4 HEM H 1 301 301 HEM HEM . JA 7 FES I 1 200 200 FES FES . KA 4 HEM J 1 501 501 HEM HEM . LA 4 HEM J 1 502 502 HEM HEM . MA 5 SMA J 1 503 4 SMA SMA . NA 6 LOP J 1 504 24 LOP LOP . OA 4 HEM K 1 301 301 HEM HEM . PA 7 FES L 1 200 200 FES FES . QA 4 HEM M 1 501 501 HEM HEM . RA 4 HEM M 1 502 502 HEM HEM . SA 5 SMA M 1 503 5 SMA SMA . TA 6 LOP M 1 504 25 LOP LOP . UA 4 HEM N 1 301 301 HEM HEM . VA 7 FES O 1 200 200 FES FES . WA 4 HEM P 1 501 501 HEM HEM . XA 4 HEM P 1 502 502 HEM HEM . YA 5 SMA P 1 503 6 SMA SMA . ZA 6 LOP P 1 504 26 LOP LOP . AB 4 HEM Q 1 301 301 HEM HEM . BB 7 FES R 1 200 200 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . DA 7 100.611 90.885 156.932 1 31.16 ? FE1 FES 200 F 1 HETATM 2 FE FE2 FES . . . DA 7 98.69 92.59 156.15 1 32.75 ? FE2 FES 200 F 1 HETATM 3 S S1 FES . . . DA 7 100.822 92.962 156.474 1 32.84 ? S1 FES 200 F 1 HETATM 4 S S2 FES . . . DA 7 98.492 90.444 156.498 1 36.69 ? S2 FES 200 F 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #