data_2FYT # _model_server_result.job_id 0iPnsih_IA_E0nC_JexYkw _model_server_result.datetime_utc '2024-11-29 19:34:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fyt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":549}' # _entry.id 2FYT # _exptl.entry_id 2FYT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2FYT _cell.length_a 107.486 _cell.length_b 107.486 _cell.length_c 68.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FYT _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 68.42 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 2FYT _atom_sites.fract_transf_matrix[1][1] 0.009304 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 549 100 SAH SAH . C 3 HOH A 1 550 1 HOH HOH . C 3 HOH A 2 551 2 HOH HOH . C 3 HOH A 3 552 3 HOH HOH . C 3 HOH A 4 553 4 HOH HOH . C 3 HOH A 5 554 5 HOH HOH . C 3 HOH A 6 555 6 HOH HOH . C 3 HOH A 7 556 7 HOH HOH . C 3 HOH A 8 557 8 HOH HOH . C 3 HOH A 9 558 9 HOH HOH . C 3 HOH A 10 559 10 HOH HOH . C 3 HOH A 11 560 11 HOH HOH . C 3 HOH A 12 561 12 HOH HOH . C 3 HOH A 13 562 13 HOH HOH . C 3 HOH A 14 563 14 HOH HOH . C 3 HOH A 15 564 15 HOH HOH . C 3 HOH A 16 565 16 HOH HOH . C 3 HOH A 17 566 17 HOH HOH . C 3 HOH A 18 567 18 HOH HOH . C 3 HOH A 19 568 19 HOH HOH . C 3 HOH A 20 569 20 HOH HOH . C 3 HOH A 21 570 21 HOH HOH . C 3 HOH A 22 571 22 HOH HOH . C 3 HOH A 23 572 23 HOH HOH . C 3 HOH A 24 573 24 HOH HOH . C 3 HOH A 25 574 25 HOH HOH . C 3 HOH A 26 575 26 HOH HOH . C 3 HOH A 27 576 27 HOH HOH . C 3 HOH A 28 577 28 HOH HOH . C 3 HOH A 29 578 29 HOH HOH . C 3 HOH A 30 579 30 HOH HOH . C 3 HOH A 31 580 31 HOH HOH . C 3 HOH A 32 581 32 HOH HOH . C 3 HOH A 33 582 33 HOH HOH . C 3 HOH A 34 583 34 HOH HOH . C 3 HOH A 35 584 35 HOH HOH . C 3 HOH A 36 585 36 HOH HOH . C 3 HOH A 37 586 37 HOH HOH . C 3 HOH A 38 587 38 HOH HOH . C 3 HOH A 39 588 39 HOH HOH . C 3 HOH A 40 589 40 HOH HOH . C 3 HOH A 41 590 41 HOH HOH . C 3 HOH A 42 591 42 HOH HOH . C 3 HOH A 43 592 43 HOH HOH . C 3 HOH A 44 593 44 HOH HOH . C 3 HOH A 45 594 45 HOH HOH . C 3 HOH A 46 595 46 HOH HOH . C 3 HOH A 47 596 47 HOH HOH . C 3 HOH A 48 597 48 HOH HOH . C 3 HOH A 49 598 49 HOH HOH . C 3 HOH A 50 599 50 HOH HOH . C 3 HOH A 51 600 51 HOH HOH . C 3 HOH A 52 601 52 HOH HOH . C 3 HOH A 53 602 53 HOH HOH . C 3 HOH A 54 603 54 HOH HOH . C 3 HOH A 55 604 55 HOH HOH . C 3 HOH A 56 605 56 HOH HOH . C 3 HOH A 57 606 57 HOH HOH . C 3 HOH A 58 607 58 HOH HOH . C 3 HOH A 59 608 59 HOH HOH . C 3 HOH A 60 609 60 HOH HOH . C 3 HOH A 61 610 61 HOH HOH . C 3 HOH A 62 611 62 HOH HOH . C 3 HOH A 63 612 63 HOH HOH . C 3 HOH A 64 613 64 HOH HOH . C 3 HOH A 65 614 65 HOH HOH . C 3 HOH A 66 615 66 HOH HOH . C 3 HOH A 67 616 67 HOH HOH . C 3 HOH A 68 617 68 HOH HOH . C 3 HOH A 69 618 69 HOH HOH . C 3 HOH A 70 619 70 HOH HOH . C 3 HOH A 71 620 71 HOH HOH . C 3 HOH A 72 621 72 HOH HOH . C 3 HOH A 73 622 73 HOH HOH . C 3 HOH A 74 623 74 HOH HOH . C 3 HOH A 75 624 75 HOH HOH . C 3 HOH A 76 625 76 HOH HOH . C 3 HOH A 77 626 77 HOH HOH . C 3 HOH A 78 627 78 HOH HOH . C 3 HOH A 79 628 79 HOH HOH . C 3 HOH A 80 629 80 HOH HOH . C 3 HOH A 81 630 81 HOH HOH . C 3 HOH A 82 631 82 HOH HOH . C 3 HOH A 83 632 83 HOH HOH . C 3 HOH A 84 633 84 HOH HOH . C 3 HOH A 85 634 85 HOH HOH . C 3 HOH A 86 635 86 HOH HOH . C 3 HOH A 87 636 87 HOH HOH . C 3 HOH A 88 637 88 HOH HOH . C 3 HOH A 89 638 89 HOH HOH . C 3 HOH A 90 639 90 HOH HOH . C 3 HOH A 91 640 91 HOH HOH . C 3 HOH A 92 641 92 HOH HOH . C 3 HOH A 93 642 93 HOH HOH . C 3 HOH A 94 643 94 HOH HOH . C 3 HOH A 95 644 95 HOH HOH . C 3 HOH A 96 645 96 HOH HOH . C 3 HOH A 97 646 97 HOH HOH . C 3 HOH A 98 647 98 HOH HOH . C 3 HOH A 99 648 99 HOH HOH . C 3 HOH A 100 649 100 HOH HOH . C 3 HOH A 101 650 101 HOH HOH . C 3 HOH A 102 651 102 HOH HOH . C 3 HOH A 103 652 103 HOH HOH . C 3 HOH A 104 653 104 HOH HOH . C 3 HOH A 105 654 105 HOH HOH . C 3 HOH A 106 655 106 HOH HOH . C 3 HOH A 107 656 107 HOH HOH . C 3 HOH A 108 657 108 HOH HOH . C 3 HOH A 109 658 109 HOH HOH . C 3 HOH A 110 659 110 HOH HOH . C 3 HOH A 111 660 111 HOH HOH . C 3 HOH A 112 661 112 HOH HOH . C 3 HOH A 113 662 113 HOH HOH . C 3 HOH A 114 663 114 HOH HOH . C 3 HOH A 115 664 115 HOH HOH . C 3 HOH A 116 665 116 HOH HOH . C 3 HOH A 117 666 117 HOH HOH . C 3 HOH A 118 667 118 HOH HOH . C 3 HOH A 119 668 119 HOH HOH . C 3 HOH A 120 669 120 HOH HOH . C 3 HOH A 121 670 121 HOH HOH . C 3 HOH A 122 671 122 HOH HOH . C 3 HOH A 123 672 123 HOH HOH . C 3 HOH A 124 673 124 HOH HOH . C 3 HOH A 125 674 125 HOH HOH . C 3 HOH A 126 675 126 HOH HOH . C 3 HOH A 127 676 127 HOH HOH . C 3 HOH A 128 677 128 HOH HOH . C 3 HOH A 129 678 129 HOH HOH . C 3 HOH A 130 679 130 HOH HOH . C 3 HOH A 131 680 131 HOH HOH . C 3 HOH A 132 681 132 HOH HOH . C 3 HOH A 133 682 133 HOH HOH . C 3 HOH A 134 683 134 HOH HOH . C 3 HOH A 135 684 135 HOH HOH . C 3 HOH A 136 685 136 HOH HOH . C 3 HOH A 137 686 137 HOH HOH . C 3 HOH A 138 687 138 HOH HOH . C 3 HOH A 139 688 139 HOH HOH . C 3 HOH A 140 689 140 HOH HOH . C 3 HOH A 141 690 141 HOH HOH . C 3 HOH A 142 691 142 HOH HOH . C 3 HOH A 143 692 143 HOH HOH . C 3 HOH A 144 693 144 HOH HOH . C 3 HOH A 145 694 145 HOH HOH . C 3 HOH A 146 695 146 HOH HOH . C 3 HOH A 147 696 147 HOH HOH . C 3 HOH A 148 697 148 HOH HOH . C 3 HOH A 149 698 149 HOH HOH . C 3 HOH A 150 699 150 HOH HOH . C 3 HOH A 151 700 151 HOH HOH . C 3 HOH A 152 701 152 HOH HOH . C 3 HOH A 153 702 153 HOH HOH . C 3 HOH A 154 703 154 HOH HOH . C 3 HOH A 155 704 155 HOH HOH . C 3 HOH A 156 705 156 HOH HOH . C 3 HOH A 157 706 157 HOH HOH . C 3 HOH A 158 707 158 HOH HOH . C 3 HOH A 159 708 159 HOH HOH . C 3 HOH A 160 709 160 HOH HOH . C 3 HOH A 161 710 161 HOH HOH . C 3 HOH A 162 711 162 HOH HOH . C 3 HOH A 163 712 163 HOH HOH . C 3 HOH A 164 713 164 HOH HOH . C 3 HOH A 165 714 165 HOH HOH . C 3 HOH A 166 715 166 HOH HOH . C 3 HOH A 167 716 167 HOH HOH . C 3 HOH A 168 717 168 HOH HOH . C 3 HOH A 169 718 169 HOH HOH . C 3 HOH A 170 719 170 HOH HOH . C 3 HOH A 171 720 171 HOH HOH . C 3 HOH A 172 721 172 HOH HOH . C 3 HOH A 173 722 173 HOH HOH . C 3 HOH A 174 723 174 HOH HOH . C 3 HOH A 175 724 175 HOH HOH . C 3 HOH A 176 725 176 HOH HOH . C 3 HOH A 177 726 177 HOH HOH . C 3 HOH A 178 727 178 HOH HOH . C 3 HOH A 179 728 179 HOH HOH . C 3 HOH A 180 729 180 HOH HOH . C 3 HOH A 181 730 181 HOH HOH . C 3 HOH A 182 731 182 HOH HOH . C 3 HOH A 183 732 183 HOH HOH . C 3 HOH A 184 733 184 HOH HOH . C 3 HOH A 185 734 185 HOH HOH . C 3 HOH A 186 735 186 HOH HOH . C 3 HOH A 187 736 187 HOH HOH . C 3 HOH A 188 737 188 HOH HOH . C 3 HOH A 189 738 189 HOH HOH . C 3 HOH A 190 739 190 HOH HOH . C 3 HOH A 191 740 191 HOH HOH . C 3 HOH A 192 741 192 HOH HOH . C 3 HOH A 193 742 193 HOH HOH . C 3 HOH A 194 743 194 HOH HOH . C 3 HOH A 195 744 195 HOH HOH . C 3 HOH A 196 745 196 HOH HOH . C 3 HOH A 197 746 197 HOH HOH . C 3 HOH A 198 747 198 HOH HOH . C 3 HOH A 199 748 199 HOH HOH . C 3 HOH A 200 749 200 HOH HOH . C 3 HOH A 201 750 201 HOH HOH . C 3 HOH A 202 751 202 HOH HOH . C 3 HOH A 203 752 203 HOH HOH . C 3 HOH A 204 753 204 HOH HOH . C 3 HOH A 205 754 205 HOH HOH . C 3 HOH A 206 755 206 HOH HOH . C 3 HOH A 207 756 207 HOH HOH . C 3 HOH A 208 757 208 HOH HOH . C 3 HOH A 209 758 209 HOH HOH . C 3 HOH A 210 759 210 HOH HOH . C 3 HOH A 211 760 211 HOH HOH . C 3 HOH A 212 761 212 HOH HOH . C 3 HOH A 213 762 213 HOH HOH . C 3 HOH A 214 763 214 HOH HOH . C 3 HOH A 215 764 215 HOH HOH . C 3 HOH A 216 765 216 HOH HOH . C 3 HOH A 217 766 217 HOH HOH . C 3 HOH A 218 767 218 HOH HOH . C 3 HOH A 219 768 219 HOH HOH . C 3 HOH A 220 769 220 HOH HOH . C 3 HOH A 221 770 221 HOH HOH . C 3 HOH A 222 771 222 HOH HOH . C 3 HOH A 223 772 223 HOH HOH . C 3 HOH A 224 773 224 HOH HOH . C 3 HOH A 225 774 225 HOH HOH . C 3 HOH A 226 775 226 HOH HOH . C 3 HOH A 227 776 227 HOH HOH . C 3 HOH A 228 777 228 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 -14.061 -33.292 19.241 1 28.29 ? N SAH 549 A 1 HETATM 2 C CA SAH . . . B 2 -14.632 -33.669 20.56 1 28.95 ? CA SAH 549 A 1 HETATM 3 C CB SAH . . . B 2 -15.055 -32.485 21.452 1 27.43 ? CB SAH 549 A 1 HETATM 4 C CG SAH . . . B 2 -16.081 -31.536 20.841 1 27.92 ? CG SAH 549 A 1 HETATM 5 S SD SAH . . . B 2 -16.474 -30.247 22.082 1 32.63 ? SD SAH 549 A 1 HETATM 6 C C SAH . . . B 2 -15.839 -34.519 20.31 1 29.58 ? C SAH 549 A 1 HETATM 7 O O SAH . . . B 2 -16.323 -34.518 19.169 1 30.58 ? O SAH 549 A 1 HETATM 8 O OXT SAH . . . B 2 -16.309 -35.216 21.234 1 31.2 ? OXT SAH 549 A 1 HETATM 9 C C5' SAH . . . B 2 -15.481 -28.898 21.366 1 31.16 ? C5' SAH 549 A 1 HETATM 10 C C4' SAH . . . B 2 -14.049 -28.792 21.883 1 30.15 ? C4' SAH 549 A 1 HETATM 11 O O4' SAH . . . B 2 -13.423 -27.743 21.174 1 30.82 ? O4' SAH 549 A 1 HETATM 12 C C3' SAH . . . B 2 -13.871 -28.422 23.347 1 29.53 ? C3' SAH 549 A 1 HETATM 13 O O3' SAH . . . B 2 -13.014 -29.369 23.964 1 31.01 ? O3' SAH 549 A 1 HETATM 14 C C2' SAH . . . B 2 -13.223 -27.023 23.368 1 30.32 ? C2' SAH 549 A 1 HETATM 15 O O2' SAH . . . B 2 -12.239 -26.91 24.356 1 32.22 ? O2' SAH 549 A 1 HETATM 16 C C1' SAH . . . B 2 -12.552 -27.008 21.989 1 32.83 ? C1' SAH 549 A 1 HETATM 17 N N9 SAH . . . B 2 -12.421 -25.692 21.326 1 33.91 ? N9 SAH 549 A 1 HETATM 18 C C8 SAH . . . B 2 -13.402 -24.741 21.143 1 36.45 ? C8 SAH 549 A 1 HETATM 19 N N7 SAH . . . B 2 -12.85 -23.687 20.492 1 36.41 ? N7 SAH 549 A 1 HETATM 20 C C5 SAH . . . B 2 -11.542 -23.942 20.265 1 35.54 ? C5 SAH 549 A 1 HETATM 21 C C6 SAH . . . B 2 -10.523 -23.217 19.625 1 36.19 ? C6 SAH 549 A 1 HETATM 22 N N6 SAH . . . B 2 -10.744 -21.991 19.096 1 35.71 ? N6 SAH 549 A 1 HETATM 23 N N1 SAH . . . B 2 -9.258 -23.78 19.543 1 36.74 ? N1 SAH 549 A 1 HETATM 24 C C2 SAH . . . B 2 -9.003 -25.024 20.094 1 35.92 ? C2 SAH 549 A 1 HETATM 25 N N3 SAH . . . B 2 -10.033 -25.734 20.703 1 35.8 ? N3 SAH 549 A 1 HETATM 26 C C4 SAH . . . B 2 -11.276 -25.207 20.779 1 35.32 ? C4 SAH 549 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #