data_2FYX # _model_server_result.job_id uhgmdAA-rlEMQVD6G1xxHg _model_server_result.datetime_utc '2025-07-01 21:50:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fyx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":132}' # _entry.id 2FYX # _exptl.entry_id 2FYX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2FYX _cell.length_a 66.787 _cell.length_b 66.787 _cell.length_c 81.18 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FYX _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2FYX _atom_sites.fract_transf_matrix[1][1] 0.01497 _atom_sites.fract_transf_matrix[1][2] 0.00864 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01729 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 132 1 GOL GOL . D 2 GOL A 1 133 4 GOL GOL . E 2 GOL A 1 134 5 GOL GOL . F 2 GOL A 1 135 6 GOL GOL . G 2 GOL B 1 132 2 GOL GOL . H 2 GOL B 1 133 3 GOL GOL . I 2 GOL B 1 134 7 GOL GOL . J 2 GOL B 1 135 8 GOL GOL . K 3 HOH A 1 136 10 HOH HOH . K 3 HOH A 2 137 11 HOH HOH . K 3 HOH A 3 138 13 HOH HOH . K 3 HOH A 4 139 15 HOH HOH . K 3 HOH A 5 140 17 HOH HOH . K 3 HOH A 6 141 21 HOH HOH . K 3 HOH A 7 142 22 HOH HOH . K 3 HOH A 8 143 23 HOH HOH . K 3 HOH A 9 144 25 HOH HOH . K 3 HOH A 10 145 26 HOH HOH . K 3 HOH A 11 146 28 HOH HOH . K 3 HOH A 12 147 34 HOH HOH . K 3 HOH A 13 148 36 HOH HOH . K 3 HOH A 14 149 39 HOH HOH . K 3 HOH A 15 150 40 HOH HOH . K 3 HOH A 16 151 44 HOH HOH . K 3 HOH A 17 152 45 HOH HOH . K 3 HOH A 18 153 48 HOH HOH . K 3 HOH A 19 154 51 HOH HOH . K 3 HOH A 20 155 53 HOH HOH . K 3 HOH A 21 156 55 HOH HOH . K 3 HOH A 22 157 57 HOH HOH . K 3 HOH A 23 158 58 HOH HOH . K 3 HOH A 24 159 62 HOH HOH . K 3 HOH A 25 160 64 HOH HOH . K 3 HOH A 26 161 66 HOH HOH . K 3 HOH A 27 162 68 HOH HOH . K 3 HOH A 28 163 70 HOH HOH . K 3 HOH A 29 164 71 HOH HOH . K 3 HOH A 30 165 75 HOH HOH . K 3 HOH A 31 166 77 HOH HOH . K 3 HOH A 32 167 78 HOH HOH . K 3 HOH A 33 168 79 HOH HOH . K 3 HOH A 34 169 80 HOH HOH . K 3 HOH A 35 170 82 HOH HOH . K 3 HOH A 36 171 85 HOH HOH . K 3 HOH A 37 172 86 HOH HOH . K 3 HOH A 38 173 90 HOH HOH . K 3 HOH A 39 174 91 HOH HOH . K 3 HOH A 40 175 92 HOH HOH . K 3 HOH A 41 176 95 HOH HOH . K 3 HOH A 42 177 96 HOH HOH . K 3 HOH A 43 178 97 HOH HOH . K 3 HOH A 44 179 100 HOH HOH . K 3 HOH A 45 180 103 HOH HOH . K 3 HOH A 46 181 104 HOH HOH . K 3 HOH A 47 182 105 HOH HOH . K 3 HOH A 48 183 107 HOH HOH . K 3 HOH A 49 184 111 HOH HOH . K 3 HOH A 50 185 113 HOH HOH . K 3 HOH A 51 186 115 HOH HOH . K 3 HOH A 52 187 118 HOH HOH . K 3 HOH A 53 188 119 HOH HOH . K 3 HOH A 54 189 126 HOH HOH . K 3 HOH A 55 190 128 HOH HOH . K 3 HOH A 56 191 131 HOH HOH . K 3 HOH A 57 192 132 HOH HOH . K 3 HOH A 58 193 133 HOH HOH . K 3 HOH A 59 194 135 HOH HOH . K 3 HOH A 60 195 137 HOH HOH . K 3 HOH A 61 196 138 HOH HOH . K 3 HOH A 62 197 139 HOH HOH . K 3 HOH A 63 198 141 HOH HOH . K 3 HOH A 64 199 143 HOH HOH . K 3 HOH A 65 200 155 HOH HOH . K 3 HOH A 66 201 158 HOH HOH . K 3 HOH A 67 202 159 HOH HOH . K 3 HOH A 68 203 160 HOH HOH . K 3 HOH A 69 204 161 HOH HOH . K 3 HOH A 70 205 162 HOH HOH . K 3 HOH A 71 206 163 HOH HOH . K 3 HOH A 72 207 164 HOH HOH . K 3 HOH A 73 208 166 HOH HOH . K 3 HOH A 74 209 168 HOH HOH . L 3 HOH B 1 136 9 HOH HOH . L 3 HOH B 2 137 12 HOH HOH . L 3 HOH B 3 138 14 HOH HOH . L 3 HOH B 4 139 16 HOH HOH . L 3 HOH B 5 140 18 HOH HOH . L 3 HOH B 6 141 19 HOH HOH . L 3 HOH B 7 142 20 HOH HOH . L 3 HOH B 8 143 24 HOH HOH . L 3 HOH B 9 144 27 HOH HOH . L 3 HOH B 10 145 29 HOH HOH . L 3 HOH B 11 146 30 HOH HOH . L 3 HOH B 12 147 31 HOH HOH . L 3 HOH B 13 148 32 HOH HOH . L 3 HOH B 14 149 33 HOH HOH . L 3 HOH B 15 150 35 HOH HOH . L 3 HOH B 16 151 37 HOH HOH . L 3 HOH B 17 152 38 HOH HOH . L 3 HOH B 18 153 41 HOH HOH . L 3 HOH B 19 154 42 HOH HOH . L 3 HOH B 20 155 43 HOH HOH . L 3 HOH B 21 156 46 HOH HOH . L 3 HOH B 22 157 47 HOH HOH . L 3 HOH B 23 158 49 HOH HOH . L 3 HOH B 24 159 50 HOH HOH . L 3 HOH B 25 160 52 HOH HOH . L 3 HOH B 26 161 54 HOH HOH . L 3 HOH B 27 162 56 HOH HOH . L 3 HOH B 28 163 59 HOH HOH . L 3 HOH B 29 164 60 HOH HOH . L 3 HOH B 30 165 61 HOH HOH . L 3 HOH B 31 166 63 HOH HOH . L 3 HOH B 32 167 65 HOH HOH . L 3 HOH B 33 168 67 HOH HOH . L 3 HOH B 34 169 69 HOH HOH . L 3 HOH B 35 170 72 HOH HOH . L 3 HOH B 36 171 73 HOH HOH . L 3 HOH B 37 172 74 HOH HOH . L 3 HOH B 38 173 76 HOH HOH . L 3 HOH B 39 174 81 HOH HOH . L 3 HOH B 40 175 83 HOH HOH . L 3 HOH B 41 176 84 HOH HOH . L 3 HOH B 42 177 87 HOH HOH . L 3 HOH B 43 178 88 HOH HOH . L 3 HOH B 44 179 89 HOH HOH . L 3 HOH B 45 180 93 HOH HOH . L 3 HOH B 46 181 94 HOH HOH . L 3 HOH B 47 182 98 HOH HOH . L 3 HOH B 48 183 99 HOH HOH . L 3 HOH B 49 184 101 HOH HOH . L 3 HOH B 50 185 102 HOH HOH . L 3 HOH B 51 186 106 HOH HOH . L 3 HOH B 52 187 108 HOH HOH . L 3 HOH B 53 188 109 HOH HOH . L 3 HOH B 54 189 110 HOH HOH . L 3 HOH B 55 190 112 HOH HOH . L 3 HOH B 56 191 114 HOH HOH . L 3 HOH B 57 192 116 HOH HOH . L 3 HOH B 58 193 117 HOH HOH . L 3 HOH B 59 194 120 HOH HOH . L 3 HOH B 60 195 121 HOH HOH . L 3 HOH B 61 196 122 HOH HOH . L 3 HOH B 62 197 123 HOH HOH . L 3 HOH B 63 198 124 HOH HOH . L 3 HOH B 64 199 125 HOH HOH . L 3 HOH B 65 200 127 HOH HOH . L 3 HOH B 66 201 129 HOH HOH . L 3 HOH B 67 202 130 HOH HOH . L 3 HOH B 68 203 134 HOH HOH . L 3 HOH B 69 204 136 HOH HOH . L 3 HOH B 70 205 140 HOH HOH . L 3 HOH B 71 206 142 HOH HOH . L 3 HOH B 72 207 144 HOH HOH . L 3 HOH B 73 208 145 HOH HOH . L 3 HOH B 74 209 146 HOH HOH . L 3 HOH B 75 210 147 HOH HOH . L 3 HOH B 76 211 148 HOH HOH . L 3 HOH B 77 212 149 HOH HOH . L 3 HOH B 78 213 150 HOH HOH . L 3 HOH B 79 214 151 HOH HOH . L 3 HOH B 80 215 152 HOH HOH . L 3 HOH B 81 216 153 HOH HOH . L 3 HOH B 82 217 154 HOH HOH . L 3 HOH B 83 218 156 HOH HOH . L 3 HOH B 84 219 157 HOH HOH . L 3 HOH B 85 220 165 HOH HOH . L 3 HOH B 86 221 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 2 10.29 29.098 -30.943 1 64.95 ? C1 GOL 132 B 1 HETATM 2 O O1 GOL . . . G 2 9.545 29.102 -32.141 1 73.39 ? O1 GOL 132 B 1 HETATM 3 C C2 GOL . . . G 2 11.717 28.511 -31.077 1 78.92 ? C2 GOL 132 B 1 HETATM 4 O O2 GOL . . . G 2 12.716 29.116 -30.218 1 64.43 ? O2 GOL 132 B 1 HETATM 5 C C3 GOL . . . G 2 12.127 28.41 -32.561 1 70.72 ? C3 GOL 132 B 1 HETATM 6 O O3 GOL . . . G 2 13.507 28.642 -32.755 1 80.37 ? O3 GOL 132 B 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #