data_2FZI # _model_server_result.job_id qUoz_ZAFYpoFyU8wmj5SVw _model_server_result.datetime_utc '2024-11-20 07:18:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fzi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":208}' # _entry.id 2FZI # _exptl.entry_id 2FZI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.402 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2,4-DIAMINO-5-[3',4'-DIMETHOXY-5'-(5-CARBOXYL-1-PENTYNYL)]BENZYL PYRIMIDINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.02 _cell.angle_gamma 90 _cell.entry_id 2FZI _cell.length_a 36.97 _cell.length_b 42.625 _cell.length_c 60.397 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 64 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 64 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C4B _struct_conn.ptnr2_label_comp_id DH3 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id DH3 _struct_conn.ptnr2_auth_seq_id 208 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.048 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H22 N4 O4' _chem_comp.formula_weight 370.402 _chem_comp.id DH3 _chem_comp.mon_nstd_flag . _chem_comp.name "2,4-DIAMINO-5-[3',4'-DIMETHOXY-5'-(5-CARBOXYL-1-PENTYNYL)]BENZYL PYRIMIDINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N4 C4 DH3 sing 83 n n N4 HN41 DH3 sing 84 n n N4 HN42 DH3 sing 85 n n C4 N3 DH3 sing 86 n y C4 C5 DH3 doub 87 n y N3 C2 DH3 doub 88 n y C2 N2 DH3 sing 89 n n C2 N1 DH3 sing 90 n y N2 HN21 DH3 sing 91 n n N2 HN22 DH3 sing 92 n n N1 C6 DH3 doub 93 n y C6 C5 DH3 sing 94 n y C6 H6 DH3 sing 95 n n C5 C51 DH3 sing 96 n n C51 C1' DH3 sing 97 n n C51 H511 DH3 sing 98 n n C51 H512 DH3 sing 99 n n C1' C6' DH3 doub 100 n y C1' C2' DH3 sing 101 n y C6' C52 DH3 sing 102 n y C6' H6' DH3 sing 103 n n C52 C53 DH3 sing 104 n n C52 C4' DH3 doub 105 n y C53 C54 DH3 trip 106 n n C54 C1 DH3 sing 107 n n C1 C3 DH3 sing 108 n n C1 H11 DH3 sing 109 n n C1 H12 DH3 sing 110 n n C3 C7 DH3 sing 111 n n C3 H31 DH3 sing 112 n n C3 H32 DH3 sing 113 n n C7 C8 DH3 sing 114 n n C7 H71 DH3 sing 115 n n C7 H72 DH3 sing 116 n n C8 O10 DH3 doub 117 n n C8 O9 DH3 sing 118 n n O9 HO9 DH3 sing 119 n n C4' O5 DH3 sing 120 n n C4' C3' DH3 sing 121 n y O5 C5' DH3 sing 122 n n C5' "H5'1" DH3 sing 123 n n C5' "H5'2" DH3 sing 124 n n C5' "H5'3" DH3 sing 125 n n C3' O4 DH3 sing 126 n n C3' C2' DH3 doub 127 n y O4 C4B DH3 sing 128 n n C4B "H4'1" DH3 sing 129 n n C4B "H4'2" DH3 sing 130 n n C4B "H4'3" DH3 sing 131 n n C2' H2' DH3 sing 132 n n # _atom_sites.entry_id 2FZI _atom_sites.fract_transf_matrix[1][1] 0.027049 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002376 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 207 207 NDP NAP . C 3 DH3 A 1 208 208 DH3 DH3 . D 4 HOH A 1 209 1 HOH HOH . D 4 HOH A 2 210 2 HOH HOH . D 4 HOH A 3 211 3 HOH HOH . D 4 HOH A 4 212 4 HOH HOH . D 4 HOH A 5 213 5 HOH HOH . D 4 HOH A 6 214 6 HOH HOH . D 4 HOH A 7 215 7 HOH HOH . D 4 HOH A 8 216 8 HOH HOH . D 4 HOH A 9 217 9 HOH HOH . D 4 HOH A 10 218 10 HOH HOH . D 4 HOH A 11 219 11 HOH HOH . D 4 HOH A 12 220 12 HOH HOH . D 4 HOH A 13 221 13 HOH HOH . D 4 HOH A 14 222 14 HOH HOH . D 4 HOH A 15 223 15 HOH HOH . D 4 HOH A 16 224 16 HOH HOH . D 4 HOH A 17 225 17 HOH HOH . D 4 HOH A 18 226 18 HOH HOH . D 4 HOH A 19 227 19 HOH HOH . D 4 HOH A 20 228 20 HOH HOH . D 4 HOH A 21 229 21 HOH HOH . D 4 HOH A 22 230 22 HOH HOH . D 4 HOH A 23 231 23 HOH HOH . D 4 HOH A 24 232 24 HOH HOH . D 4 HOH A 25 233 25 HOH HOH . D 4 HOH A 26 234 26 HOH HOH . D 4 HOH A 27 235 27 HOH HOH . D 4 HOH A 28 236 28 HOH HOH . D 4 HOH A 29 237 29 HOH HOH . D 4 HOH A 30 238 30 HOH HOH . D 4 HOH A 31 239 31 HOH HOH . D 4 HOH A 32 240 32 HOH HOH . D 4 HOH A 33 241 33 HOH HOH . D 4 HOH A 34 242 34 HOH HOH . D 4 HOH A 35 243 35 HOH HOH . D 4 HOH A 36 244 36 HOH HOH . D 4 HOH A 37 245 37 HOH HOH . D 4 HOH A 38 246 38 HOH HOH . D 4 HOH A 39 247 39 HOH HOH . D 4 HOH A 40 248 40 HOH HOH . D 4 HOH A 41 249 41 HOH HOH . D 4 HOH A 42 250 42 HOH HOH . D 4 HOH A 43 251 43 HOH HOH . D 4 HOH A 44 252 44 HOH HOH . D 4 HOH A 45 253 45 HOH HOH . D 4 HOH A 46 254 46 HOH HOH . D 4 HOH A 47 255 47 HOH HOH . D 4 HOH A 48 256 48 HOH HOH . D 4 HOH A 49 257 49 HOH HOH . D 4 HOH A 50 258 50 HOH HOH . D 4 HOH A 51 259 51 HOH HOH . D 4 HOH A 52 260 52 HOH HOH . D 4 HOH A 53 261 53 HOH HOH . D 4 HOH A 54 262 54 HOH HOH . D 4 HOH A 55 263 55 HOH HOH . D 4 HOH A 56 264 56 HOH HOH . D 4 HOH A 57 265 57 HOH HOH . D 4 HOH A 58 266 58 HOH HOH . D 4 HOH A 59 267 59 HOH HOH . D 4 HOH A 60 268 60 HOH HOH . D 4 HOH A 61 269 61 HOH HOH . D 4 HOH A 62 270 62 HOH HOH . D 4 HOH A 63 271 63 HOH HOH . D 4 HOH A 64 272 64 HOH HOH . D 4 HOH A 65 273 65 HOH HOH . D 4 HOH A 66 274 66 HOH HOH . D 4 HOH A 67 275 67 HOH HOH . D 4 HOH A 68 276 68 HOH HOH . D 4 HOH A 69 277 69 HOH HOH . D 4 HOH A 70 278 70 HOH HOH . D 4 HOH A 71 279 71 HOH HOH . D 4 HOH A 72 280 72 HOH HOH . D 4 HOH A 73 281 73 HOH HOH . D 4 HOH A 74 282 74 HOH HOH . D 4 HOH A 75 283 75 HOH HOH . D 4 HOH A 76 284 76 HOH HOH . D 4 HOH A 77 285 77 HOH HOH . D 4 HOH A 78 286 78 HOH HOH . D 4 HOH A 79 287 79 HOH HOH . D 4 HOH A 80 288 80 HOH HOH . D 4 HOH A 81 289 81 HOH HOH . D 4 HOH A 82 290 82 HOH HOH . D 4 HOH A 83 291 83 HOH HOH . D 4 HOH A 84 292 84 HOH HOH . D 4 HOH A 85 293 85 HOH HOH . D 4 HOH A 86 294 86 HOH HOH . D 4 HOH A 87 295 87 HOH HOH . D 4 HOH A 88 296 88 HOH HOH . D 4 HOH A 89 297 89 HOH HOH . D 4 HOH A 90 298 90 HOH HOH . D 4 HOH A 91 299 91 HOH HOH . D 4 HOH A 92 300 92 HOH HOH . D 4 HOH A 93 301 93 HOH HOH . D 4 HOH A 94 302 94 HOH HOH . D 4 HOH A 95 303 95 HOH HOH . D 4 HOH A 96 304 96 HOH HOH . D 4 HOH A 97 305 97 HOH HOH . D 4 HOH A 98 306 98 HOH HOH . D 4 HOH A 99 307 99 HOH HOH . D 4 HOH A 100 308 100 HOH HOH . D 4 HOH A 101 309 101 HOH HOH . D 4 HOH A 102 310 102 HOH HOH . D 4 HOH A 103 311 103 HOH HOH . D 4 HOH A 104 312 104 HOH HOH . D 4 HOH A 105 313 105 HOH HOH . D 4 HOH A 106 314 106 HOH HOH . D 4 HOH A 107 315 107 HOH HOH . D 4 HOH A 108 316 108 HOH HOH . D 4 HOH A 109 317 109 HOH HOH . D 4 HOH A 110 318 110 HOH HOH . D 4 HOH A 111 319 111 HOH HOH . D 4 HOH A 112 320 112 HOH HOH . D 4 HOH A 113 321 113 HOH HOH . D 4 HOH A 114 322 114 HOH HOH . D 4 HOH A 115 323 115 HOH HOH . D 4 HOH A 116 324 116 HOH HOH . D 4 HOH A 117 325 117 HOH HOH . D 4 HOH A 118 326 118 HOH HOH . D 4 HOH A 119 327 119 HOH HOH . D 4 HOH A 120 328 120 HOH HOH . D 4 HOH A 121 329 121 HOH HOH . D 4 HOH A 122 330 122 HOH HOH . D 4 HOH A 123 331 123 HOH HOH . D 4 HOH A 124 332 124 HOH HOH . D 4 HOH A 125 333 125 HOH HOH . D 4 HOH A 126 334 126 HOH HOH . D 4 HOH A 127 335 1 HOH TIP . D 4 HOH A 128 336 2 HOH TIP . D 4 HOH A 129 337 3 HOH TIP . D 4 HOH A 130 338 4 HOH TIP . D 4 HOH A 131 339 5 HOH TIP . D 4 HOH A 132 340 6 HOH TIP . D 4 HOH A 133 341 7 HOH TIP . D 4 HOH A 134 342 8 HOH TIP . D 4 HOH A 135 343 9 HOH TIP . D 4 HOH A 136 344 10 HOH TIP . D 4 HOH A 137 345 11 HOH TIP . D 4 HOH A 138 346 12 HOH TIP . D 4 HOH A 139 347 13 HOH TIP . D 4 HOH A 140 348 14 HOH TIP . D 4 HOH A 141 349 15 HOH TIP . D 4 HOH A 142 350 16 HOH TIP . D 4 HOH A 143 351 17 HOH TIP . D 4 HOH A 144 352 18 HOH TIP . D 4 HOH A 145 353 19 HOH TIP . D 4 HOH A 146 354 20 HOH TIP . D 4 HOH A 147 355 21 HOH TIP . D 4 HOH A 148 356 22 HOH TIP . D 4 HOH A 149 357 23 HOH TIP . D 4 HOH A 150 358 24 HOH TIP . D 4 HOH A 151 359 25 HOH TIP . D 4 HOH A 152 360 26 HOH TIP . D 4 HOH A 153 361 27 HOH TIP . D 4 HOH A 154 362 28 HOH TIP . D 4 HOH A 155 363 29 HOH TIP . D 4 HOH A 156 364 30 HOH TIP . D 4 HOH A 157 365 31 HOH TIP . D 4 HOH A 158 366 32 HOH TIP . D 4 HOH A 159 367 33 HOH TIP . D 4 HOH A 160 368 34 HOH TIP . D 4 HOH A 161 369 35 HOH TIP . D 4 HOH A 162 370 36 HOH TIP . D 4 HOH A 163 371 37 HOH TIP . D 4 HOH A 164 372 38 HOH TIP . D 4 HOH A 165 373 39 HOH TIP . D 4 HOH A 166 374 40 HOH TIP . D 4 HOH A 167 375 41 HOH TIP . D 4 HOH A 168 376 42 HOH TIP . D 4 HOH A 169 377 43 HOH TIP . D 4 HOH A 170 378 44 HOH TIP . D 4 HOH A 171 379 45 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N4 DH3 . . . C 3 47.054 0.427 14.544 1 8.42 ? N4 DH3 208 A 1 HETATM 2 C C4 DH3 . . . C 3 47.533 -0.407 13.506 1 13.03 ? C4 DH3 208 A 1 HETATM 3 N N3 DH3 . . . C 3 46.839 -1.547 13.227 1 12.37 ? N3 DH3 208 A 1 HETATM 4 C C2 DH3 . . . C 3 47.235 -2.41 12.238 1 10.75 ? C2 DH3 208 A 1 HETATM 5 N N2 DH3 . . . C 3 46.476 -3.574 11.99 1 6.97 ? N2 DH3 208 A 1 HETATM 6 N N1 DH3 . . . C 3 48.349 -2.124 11.512 1 9.57 ? N1 DH3 208 A 1 HETATM 7 C C6 DH3 . . . C 3 49.087 -1.005 11.743 1 11.93 ? C6 DH3 208 A 1 HETATM 8 C C5 DH3 . . . C 3 48.717 -0.074 12.756 1 11.74 ? C5 DH3 208 A 1 HETATM 9 C C51 DH3 . . . C 3 49.343 1.301 13.243 1 11.36 ? C51 DH3 208 A 1 HETATM 10 C C1' DH3 . . . C 3 50.658 1.599 12.465 1 12.49 ? C1' DH3 208 A 1 HETATM 11 C C6' DH3 . . . C 3 50.68 2.033 11.095 1 11.4 ? C6' DH3 208 A 1 HETATM 12 C C52 DH3 . . . C 3 51.948 2.272 10.467 1 14.79 ? C52 DH3 208 A 1 HETATM 13 C C53 DH3 . . . C 3 51.961 2.711 9.051 1 16.81 ? C53 DH3 208 A 1 HETATM 14 C C54 DH3 . . . C 3 51.948 3.357 8.048 1 21.02 ? C54 DH3 208 A 1 HETATM 15 C C1 DH3 . . . C 3 51.947 4.17 7.089 1 22.49 ? C1 DH3 208 A 1 HETATM 16 C C3 DH3 . . . C 3 51.191 4.812 6.262 1 23.5 ? C3 DH3 208 A 1 HETATM 17 C C7 DH3 . . . C 3 49.736 4.717 6.232 1 23.27 ? C7 DH3 208 A 1 HETATM 18 C C8 DH3 . . . C 3 48.369 5.323 6.247 1 19.98 ? C8 DH3 208 A 1 HETATM 19 O O10 DH3 . . . C 3 48.109 6.278 5.533 1 19.9 ? O10 DH3 208 A 1 HETATM 20 O O9 DH3 . . . C 3 47.503 4.867 6.978 1 21.51 ? O9 DH3 208 A 1 HETATM 21 C C4' DH3 . . . C 3 53.182 2.098 11.175 1 15.4 ? C4' DH3 208 A 1 HETATM 22 O O5 DH3 . . . C 3 54.401 2.347 10.504 1 18.7 ? O5 DH3 208 A 1 HETATM 23 C C5' DH3 . . . C 3 55.59 1.429 10.056 1 15.58 ? C5' DH3 208 A 1 HETATM 24 C C3' DH3 . . . C 3 53.138 1.667 12.541 1 14.56 ? C3' DH3 208 A 1 HETATM 25 O O4 DH3 . . . C 3 54.309 1.483 13.271 1 16.45 ? O4 DH3 208 A 1 HETATM 26 C C4B DH3 . . . C 3 55.132 2.893 13.798 1 13.6 ? C4B DH3 208 A 1 HETATM 27 C C2' DH3 . . . C 3 51.881 1.431 13.152 1 11.63 ? C2' DH3 208 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #