data_2FZJ # _model_server_result.job_id r6vtcB18hmPww3DNqtJ3Ag _model_server_result.datetime_utc '2024-11-20 08:30:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fzj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":188}' # _entry.id 2FZJ # _exptl.entry_id 2FZJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.402 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2,4-DIAMINO-5-[3',4'-DIMETHOXY-5'-(5-CARBOXYL-1-PENTYNYL)]BENZYL PYRIMIDINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118 _cell.angle_gamma 90 _cell.entry_id 2FZJ _cell.length_a 41.806 _cell.length_b 61.034 _cell.length_c 43.08 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FZJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H22 N4 O4' _chem_comp.formula_weight 370.402 _chem_comp.id DH3 _chem_comp.mon_nstd_flag . _chem_comp.name "2,4-DIAMINO-5-[3',4'-DIMETHOXY-5'-(5-CARBOXYL-1-PENTYNYL)]BENZYL PYRIMIDINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N4 C4 DH3 sing 83 n n N4 HN41 DH3 sing 84 n n N4 HN42 DH3 sing 85 n n C4 N3 DH3 sing 86 n y C4 C5 DH3 doub 87 n y N3 C2 DH3 doub 88 n y C2 N2 DH3 sing 89 n n C2 N1 DH3 sing 90 n y N2 HN21 DH3 sing 91 n n N2 HN22 DH3 sing 92 n n N1 C6 DH3 doub 93 n y C6 C5 DH3 sing 94 n y C6 H6 DH3 sing 95 n n C5 C51 DH3 sing 96 n n C51 C1' DH3 sing 97 n n C51 H511 DH3 sing 98 n n C51 H512 DH3 sing 99 n n C1' C6' DH3 doub 100 n y C1' C2' DH3 sing 101 n y C6' C52 DH3 sing 102 n y C6' H6' DH3 sing 103 n n C52 C53 DH3 sing 104 n n C52 C4' DH3 doub 105 n y C53 C54 DH3 trip 106 n n C54 C1 DH3 sing 107 n n C1 C3 DH3 sing 108 n n C1 H11 DH3 sing 109 n n C1 H12 DH3 sing 110 n n C3 C7 DH3 sing 111 n n C3 H31 DH3 sing 112 n n C3 H32 DH3 sing 113 n n C7 C8 DH3 sing 114 n n C7 H71 DH3 sing 115 n n C7 H72 DH3 sing 116 n n C8 O10 DH3 doub 117 n n C8 O9 DH3 sing 118 n n O9 HO9 DH3 sing 119 n n C4' O5 DH3 sing 120 n n C4' C3' DH3 sing 121 n y O5 C5' DH3 sing 122 n n C5' "H5'1" DH3 sing 123 n n C5' "H5'2" DH3 sing 124 n n C5' "H5'3" DH3 sing 125 n n C3' O4 DH3 sing 126 n n C3' C2' DH3 doub 127 n y O4 C4B DH3 sing 128 n n C4B "H4'1" DH3 sing 129 n n C4B "H4'2" DH3 sing 130 n n C4B "H4'3" DH3 sing 131 n n C2' H2' DH3 sing 132 n n # _atom_sites.entry_id 2FZJ _atom_sites.fract_transf_matrix[1][1] 0.02392 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.012718 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016384 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02629 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 187 187 NDP NAP . C 3 DH3 A 1 188 188 DH3 DH3 . D 4 HOH A 1 190 190 HOH HOH . D 4 HOH A 2 191 191 HOH HOH . D 4 HOH A 3 192 192 HOH HOH . D 4 HOH A 4 193 193 HOH HOH . D 4 HOH A 5 194 194 HOH HOH . D 4 HOH A 6 195 195 HOH HOH . D 4 HOH A 7 196 196 HOH HOH . D 4 HOH A 8 197 197 HOH HOH . D 4 HOH A 9 198 198 HOH HOH . D 4 HOH A 10 199 199 HOH HOH . D 4 HOH A 11 200 200 HOH HOH . D 4 HOH A 12 201 201 HOH HOH . D 4 HOH A 13 202 202 HOH HOH . D 4 HOH A 14 203 203 HOH HOH . D 4 HOH A 15 204 204 HOH HOH . D 4 HOH A 16 205 205 HOH HOH . D 4 HOH A 17 206 206 HOH HOH . D 4 HOH A 18 207 207 HOH HOH . D 4 HOH A 19 208 208 HOH HOH . D 4 HOH A 20 209 209 HOH HOH . D 4 HOH A 21 210 210 HOH HOH . D 4 HOH A 22 211 211 HOH HOH . D 4 HOH A 23 212 212 HOH HOH . D 4 HOH A 24 213 213 HOH HOH . D 4 HOH A 25 214 214 HOH HOH . D 4 HOH A 26 215 215 HOH HOH . D 4 HOH A 27 216 216 HOH HOH . D 4 HOH A 28 217 217 HOH HOH . D 4 HOH A 29 218 218 HOH HOH . D 4 HOH A 30 219 219 HOH HOH . D 4 HOH A 31 220 220 HOH HOH . D 4 HOH A 32 230 230 HOH HOH . D 4 HOH A 33 240 240 HOH HOH . D 4 HOH A 34 250 250 HOH HOH . D 4 HOH A 35 251 251 HOH HOH . D 4 HOH A 36 252 252 HOH HOH . D 4 HOH A 37 253 253 HOH HOH . D 4 HOH A 38 254 254 HOH HOH . D 4 HOH A 39 255 255 HOH HOH . D 4 HOH A 40 256 256 HOH HOH . D 4 HOH A 41 257 257 HOH HOH . D 4 HOH A 42 258 258 HOH HOH . D 4 HOH A 43 259 259 HOH HOH . D 4 HOH A 44 260 260 HOH HOH . D 4 HOH A 45 261 261 HOH HOH . D 4 HOH A 46 262 262 HOH HOH . D 4 HOH A 47 263 263 HOH HOH . D 4 HOH A 48 264 264 HOH HOH . D 4 HOH A 49 265 265 HOH HOH . D 4 HOH A 50 266 266 HOH HOH . D 4 HOH A 51 267 267 HOH HOH . D 4 HOH A 52 268 268 HOH HOH . D 4 HOH A 53 269 269 HOH HOH . D 4 HOH A 54 270 270 HOH HOH . D 4 HOH A 55 271 271 HOH HOH . D 4 HOH A 56 272 272 HOH HOH . D 4 HOH A 57 273 273 HOH HOH . D 4 HOH A 58 274 274 HOH HOH . D 4 HOH A 59 275 275 HOH HOH . D 4 HOH A 60 276 276 HOH HOH . D 4 HOH A 61 277 277 HOH HOH . D 4 HOH A 62 278 278 HOH HOH . D 4 HOH A 63 279 279 HOH HOH . D 4 HOH A 64 280 280 HOH HOH . D 4 HOH A 65 281 281 HOH HOH . D 4 HOH A 66 282 282 HOH HOH . D 4 HOH A 67 283 283 HOH HOH . D 4 HOH A 68 284 284 HOH HOH . D 4 HOH A 69 285 285 HOH HOH . D 4 HOH A 70 286 286 HOH HOH . D 4 HOH A 71 287 287 HOH HOH . D 4 HOH A 72 288 288 HOH HOH . D 4 HOH A 73 289 289 HOH HOH . D 4 HOH A 74 290 290 HOH HOH . D 4 HOH A 75 291 291 HOH HOH . D 4 HOH A 76 292 292 HOH HOH . D 4 HOH A 77 293 293 HOH HOH . D 4 HOH A 78 294 294 HOH HOH . D 4 HOH A 79 295 295 HOH HOH . D 4 HOH A 80 296 296 HOH HOH . D 4 HOH A 81 297 297 HOH HOH . D 4 HOH A 82 298 298 HOH HOH . D 4 HOH A 83 299 299 HOH HOH . D 4 HOH A 84 300 300 HOH HOH . D 4 HOH A 85 301 301 HOH HOH . D 4 HOH A 86 302 302 HOH HOH . D 4 HOH A 87 303 303 HOH HOH . D 4 HOH A 88 304 304 HOH HOH . D 4 HOH A 89 305 305 HOH HOH . D 4 HOH A 90 306 306 HOH HOH . D 4 HOH A 91 307 307 HOH HOH . D 4 HOH A 92 308 308 HOH HOH . D 4 HOH A 93 309 309 HOH HOH . D 4 HOH A 94 310 310 HOH HOH . D 4 HOH A 95 311 311 HOH HOH . D 4 HOH A 96 312 312 HOH HOH . D 4 HOH A 97 313 313 HOH HOH . D 4 HOH A 98 314 314 HOH HOH . D 4 HOH A 99 315 315 HOH HOH . D 4 HOH A 100 316 316 HOH HOH . D 4 HOH A 101 317 317 HOH HOH . D 4 HOH A 102 318 318 HOH HOH . D 4 HOH A 103 319 319 HOH HOH . D 4 HOH A 104 320 320 HOH HOH . D 4 HOH A 105 321 321 HOH HOH . D 4 HOH A 106 322 322 HOH HOH . D 4 HOH A 107 323 323 HOH HOH . D 4 HOH A 108 324 324 HOH HOH . D 4 HOH A 109 325 325 HOH HOH . D 4 HOH A 110 326 326 HOH HOH . D 4 HOH A 111 327 327 HOH HOH . D 4 HOH A 112 328 328 HOH HOH . D 4 HOH A 113 329 329 HOH HOH . D 4 HOH A 114 330 330 HOH HOH . D 4 HOH A 115 331 331 HOH HOH . D 4 HOH A 116 332 332 HOH HOH . D 4 HOH A 117 333 333 HOH HOH . D 4 HOH A 118 334 334 HOH HOH . D 4 HOH A 119 335 335 HOH HOH . D 4 HOH A 120 336 336 HOH HOH . D 4 HOH A 121 337 337 HOH HOH . D 4 HOH A 122 338 338 HOH HOH . D 4 HOH A 123 339 339 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N4 DH3 . . . C 3 1.015 -1.031 12.617 1 28.31 ? N4 DH3 188 A 1 HETATM 2 C C4 DH3 . . . C 3 1.393 -2.306 13.122 1 30.05 ? C4 DH3 188 A 1 HETATM 3 N N3 DH3 . . . C 3 0.417 -3.279 13.187 1 27.74 ? N3 DH3 188 A 1 HETATM 4 C C2 DH3 . . . C 3 0.673 -4.549 13.657 1 28.12 ? C2 DH3 188 A 1 HETATM 5 N N2 DH3 . . . C 3 -0.365 -5.481 13.687 1 27.25 ? N2 DH3 188 A 1 HETATM 6 N N1 DH3 . . . C 3 1.942 -4.869 14.086 1 28.66 ? N1 DH3 188 A 1 HETATM 7 C C6 DH3 . . . C 3 2.964 -3.945 14.049 1 30.75 ? C6 DH3 188 A 1 HETATM 8 C C5 DH3 . . . C 3 2.755 -2.598 13.56 1 31.09 ? C5 DH3 188 A 1 HETATM 9 C C51 DH3 . . . C 3 3.717 -1.331 13.393 1 35.03 ? C51 DH3 188 A 1 HETATM 10 C C1' DH3 . . . C 3 5.171 -1.612 13.87 1 38.38 ? C1' DH3 188 A 1 HETATM 11 C C6' DH3 . . . C 3 6.118 -2.412 13.121 1 39.8 ? C6' DH3 188 A 1 HETATM 12 C C52 DH3 . . . C 3 7.453 -2.613 13.66 1 42.28 ? C52 DH3 188 A 1 HETATM 13 C C53 DH3 . . . C 3 8.406 -3.436 12.879 1 43.58 ? C53 DH3 188 A 1 HETATM 14 C C54 DH3 . . . C 3 8.911 -4.274 12.209 1 42.93 ? C54 DH3 188 A 1 HETATM 15 C C1 DH3 . . . C 3 9.413 -5.046 11.361 1 41.88 ? C1 DH3 188 A 1 HETATM 16 C C3 DH3 . . . C 3 9.293 -5.51 10.166 1 39.49 ? C3 DH3 188 A 1 HETATM 17 C C7 DH3 . . . C 3 8.769 -4.753 9.038 1 36.76 ? C7 DH3 188 A 1 HETATM 18 C C8 DH3 . . . C 3 8.395 -4.649 7.603 1 34.68 ? C8 DH3 188 A 1 HETATM 19 O O10 DH3 . . . C 3 9.262 -4.659 6.743 1 34.27 ? O10 DH3 188 A 1 HETATM 20 O O9 DH3 . . . C 3 7.222 -4.559 7.28 1 32.68 ? O9 DH3 188 A 1 HETATM 21 C C4' DH3 . . . C 3 7.853 -2.035 14.933 1 43.18 ? C4' DH3 188 A 1 HETATM 22 O O5 DH3 . . . C 3 9.167 -2.264 15.414 1 44.61 ? O5 DH3 188 A 1 HETATM 23 C C5' DH3 . . . C 3 9.579 -3.127 16.583 1 45.14 ? C5' DH3 188 A 1 HETATM 24 C C3' DH3 . . . C 3 6.894 -1.232 15.674 1 42.8 ? C3' DH3 188 A 1 HETATM 25 O O4 DH3 . . . C 3 7.237 -0.662 16.905 1 43.7 ? O4 DH3 188 A 1 HETATM 26 C C4B DH3 . . . C 3 8.192 0.669 16.72 1 43.16 ? C4B DH3 188 A 1 HETATM 27 C C2' DH3 . . . C 3 5.571 -1.041 15.126 1 40.38 ? C2' DH3 188 A 1 # _model_server_stats.io_time_ms 91 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #