data_2G0T # _model_server_result.job_id f2Vyy7PpK_A7y0tLTKNEdw _model_server_result.datetime_utc '2024-10-18 22:20:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g0t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":341}' # _entry.id 2G0T # _exptl.entry_id 2G0T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G0T _cell.length_a 191.634 _cell.length_b 191.634 _cell.length_c 191.634 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G0T _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 19_555 -x+3/4,-z+3/4,-y+3/4 -1 0 0 0 0 -1 0 -1 0 143.7255 143.7255 143.7255 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 12 A HIS 0 1_555 A N MSE 13 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 13 A MSE 1 1_555 A N ASP 14 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C LYS 63 A LYS 51 1_555 A N MSE 64 A MSE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 64 A MSE 52 1_555 A N ALA 65 A ALA 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C GLU 87 A GLU 75 1_555 A N MSE 88 A MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 88 A MSE 76 1_555 A N GLY 89 A GLY 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C GLY 119 A GLY 107 1_555 A N MSE 120 A MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C MSE 120 A MSE 108 1_555 A N ASP 121 A ASP 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C GLU 342 A GLU 330 1_555 A N MSE 343 A MSE 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale10 A C MSE 343 A MSE 331 1_555 A N LEU 344 A LEU 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 A C ALA 347 A ALA 335 1_555 A N MSE 348 A MSE 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C MSE 348 A MSE 336 1_555 A N VAL 349 A VAL 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 B C HIS 12 B HIS 0 1_555 B N MSE 13 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale14 B C MSE 13 B MSE 1 1_555 B N ASP 14 B ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 B C LYS 63 B LYS 51 1_555 B N MSE 64 B MSE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 B C MSE 64 B MSE 52 1_555 B N ALA 65 B ALA 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 B C GLU 87 B GLU 75 1_555 B N MSE 88 B MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale18 B C MSE 88 B MSE 76 1_555 B N GLY 89 B GLY 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 B C GLY 119 B GLY 107 1_555 B N MSE 120 B MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale20 B C MSE 120 B MSE 108 1_555 B N ASP 121 B ASP 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale21 B C GLU 342 B GLU 330 1_555 B N MSE 343 B MSE 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale22 B C MSE 343 B MSE 331 1_555 B N LEU 344 B LEU 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale23 B C ALA 347 B ALA 335 1_555 B N MSE 348 B MSE 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale24 B C MSE 348 B MSE 336 1_555 B N VAL 349 B VAL 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 2G0T _atom_sites.fract_transf_matrix[1][1] 0.00522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00522 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 339 2 PO4 PO4 . D 3 EDO A 1 340 4 EDO EDO . E 3 EDO A 1 341 5 EDO EDO . F 2 PO4 B 1 339 1 PO4 PO4 . G 3 EDO B 1 340 3 EDO EDO . H 4 FMT B 1 341 6 FMT FMT . I 5 HOH A 1 342 8 HOH HOH . I 5 HOH A 2 343 10 HOH HOH . I 5 HOH A 3 344 21 HOH HOH . I 5 HOH A 4 345 24 HOH HOH . I 5 HOH A 5 346 28 HOH HOH . I 5 HOH A 6 347 32 HOH HOH . I 5 HOH A 7 348 36 HOH HOH . I 5 HOH A 8 349 37 HOH HOH . I 5 HOH A 9 350 41 HOH HOH . I 5 HOH A 10 351 45 HOH HOH . I 5 HOH A 11 352 46 HOH HOH . I 5 HOH A 12 353 51 HOH HOH . I 5 HOH A 13 354 53 HOH HOH . I 5 HOH A 14 355 54 HOH HOH . I 5 HOH A 15 356 55 HOH HOH . I 5 HOH A 16 357 56 HOH HOH . I 5 HOH A 17 358 59 HOH HOH . I 5 HOH A 18 359 64 HOH HOH . I 5 HOH A 19 360 65 HOH HOH . I 5 HOH A 20 361 67 HOH HOH . I 5 HOH A 21 362 70 HOH HOH . I 5 HOH A 22 363 72 HOH HOH . I 5 HOH A 23 364 73 HOH HOH . I 5 HOH A 24 365 74 HOH HOH . I 5 HOH A 25 366 75 HOH HOH . I 5 HOH A 26 367 76 HOH HOH . I 5 HOH A 27 368 78 HOH HOH . I 5 HOH A 28 369 81 HOH HOH . I 5 HOH A 29 370 84 HOH HOH . I 5 HOH A 30 371 85 HOH HOH . I 5 HOH A 31 372 88 HOH HOH . I 5 HOH A 32 373 89 HOH HOH . I 5 HOH A 33 374 91 HOH HOH . I 5 HOH A 34 375 94 HOH HOH . I 5 HOH A 35 376 95 HOH HOH . I 5 HOH A 36 377 99 HOH HOH . I 5 HOH A 37 378 101 HOH HOH . I 5 HOH A 38 379 102 HOH HOH . I 5 HOH A 39 380 107 HOH HOH . I 5 HOH A 40 381 108 HOH HOH . I 5 HOH A 41 382 109 HOH HOH . I 5 HOH A 42 383 112 HOH HOH . I 5 HOH A 43 384 114 HOH HOH . I 5 HOH A 44 385 116 HOH HOH . I 5 HOH A 45 386 119 HOH HOH . I 5 HOH A 46 387 120 HOH HOH . I 5 HOH A 47 388 123 HOH HOH . I 5 HOH A 48 389 127 HOH HOH . I 5 HOH A 49 390 130 HOH HOH . I 5 HOH A 50 391 132 HOH HOH . I 5 HOH A 51 392 133 HOH HOH . I 5 HOH A 52 393 134 HOH HOH . I 5 HOH A 53 394 135 HOH HOH . I 5 HOH A 54 395 136 HOH HOH . I 5 HOH A 55 396 137 HOH HOH . I 5 HOH A 56 397 138 HOH HOH . I 5 HOH A 57 398 139 HOH HOH . I 5 HOH A 58 399 140 HOH HOH . I 5 HOH A 59 400 145 HOH HOH . I 5 HOH A 60 401 149 HOH HOH . I 5 HOH A 61 402 150 HOH HOH . I 5 HOH A 62 403 151 HOH HOH . I 5 HOH A 63 404 152 HOH HOH . J 5 HOH B 1 342 7 HOH HOH . J 5 HOH B 2 343 9 HOH HOH . J 5 HOH B 3 344 11 HOH HOH . J 5 HOH B 4 345 12 HOH HOH . J 5 HOH B 5 346 13 HOH HOH . J 5 HOH B 6 347 14 HOH HOH . J 5 HOH B 7 348 15 HOH HOH . J 5 HOH B 8 349 16 HOH HOH . J 5 HOH B 9 350 17 HOH HOH . J 5 HOH B 10 351 18 HOH HOH . J 5 HOH B 11 352 19 HOH HOH . J 5 HOH B 12 353 20 HOH HOH . J 5 HOH B 13 354 22 HOH HOH . J 5 HOH B 14 355 23 HOH HOH . J 5 HOH B 15 356 25 HOH HOH . J 5 HOH B 16 357 26 HOH HOH . J 5 HOH B 17 358 27 HOH HOH . J 5 HOH B 18 359 29 HOH HOH . J 5 HOH B 19 360 30 HOH HOH . J 5 HOH B 20 361 31 HOH HOH . J 5 HOH B 21 362 33 HOH HOH . J 5 HOH B 22 363 34 HOH HOH . J 5 HOH B 23 364 35 HOH HOH . J 5 HOH B 24 365 38 HOH HOH . J 5 HOH B 25 366 39 HOH HOH . J 5 HOH B 26 367 40 HOH HOH . J 5 HOH B 27 368 42 HOH HOH . J 5 HOH B 28 369 43 HOH HOH . J 5 HOH B 29 370 44 HOH HOH . J 5 HOH B 30 371 47 HOH HOH . J 5 HOH B 31 372 48 HOH HOH . J 5 HOH B 32 373 49 HOH HOH . J 5 HOH B 33 374 50 HOH HOH . J 5 HOH B 34 375 52 HOH HOH . J 5 HOH B 35 376 57 HOH HOH . J 5 HOH B 36 377 58 HOH HOH . J 5 HOH B 37 378 60 HOH HOH . J 5 HOH B 38 379 61 HOH HOH . J 5 HOH B 39 380 62 HOH HOH . J 5 HOH B 40 381 63 HOH HOH . J 5 HOH B 41 382 66 HOH HOH . J 5 HOH B 42 383 68 HOH HOH . J 5 HOH B 43 384 69 HOH HOH . J 5 HOH B 44 385 71 HOH HOH . J 5 HOH B 45 386 77 HOH HOH . J 5 HOH B 46 387 79 HOH HOH . J 5 HOH B 47 388 80 HOH HOH . J 5 HOH B 48 389 82 HOH HOH . J 5 HOH B 49 390 83 HOH HOH . J 5 HOH B 50 391 86 HOH HOH . J 5 HOH B 51 392 87 HOH HOH . J 5 HOH B 52 393 90 HOH HOH . J 5 HOH B 53 394 92 HOH HOH . J 5 HOH B 54 395 93 HOH HOH . J 5 HOH B 55 396 96 HOH HOH . J 5 HOH B 56 397 97 HOH HOH . J 5 HOH B 57 398 98 HOH HOH . J 5 HOH B 58 399 100 HOH HOH . J 5 HOH B 59 400 103 HOH HOH . J 5 HOH B 60 401 104 HOH HOH . J 5 HOH B 61 402 105 HOH HOH . J 5 HOH B 62 403 106 HOH HOH . J 5 HOH B 63 404 110 HOH HOH . J 5 HOH B 64 405 111 HOH HOH . J 5 HOH B 65 406 113 HOH HOH . J 5 HOH B 66 407 115 HOH HOH . J 5 HOH B 67 408 117 HOH HOH . J 5 HOH B 68 409 118 HOH HOH . J 5 HOH B 69 410 121 HOH HOH . J 5 HOH B 70 411 122 HOH HOH . J 5 HOH B 71 412 124 HOH HOH . J 5 HOH B 72 413 125 HOH HOH . J 5 HOH B 73 414 126 HOH HOH . J 5 HOH B 74 415 128 HOH HOH . J 5 HOH B 75 416 129 HOH HOH . J 5 HOH B 76 417 131 HOH HOH . J 5 HOH B 77 418 141 HOH HOH . J 5 HOH B 78 419 142 HOH HOH . J 5 HOH B 79 420 143 HOH HOH . J 5 HOH B 80 421 144 HOH HOH . J 5 HOH B 81 422 146 HOH HOH . J 5 HOH B 82 423 147 HOH HOH . J 5 HOH B 83 424 148 HOH HOH . J 5 HOH B 84 425 153 HOH HOH . J 5 HOH B 85 426 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 54.449 134.467 77.334 1 39.8 ? C1 EDO 341 A 1 HETATM 2 O O1 EDO . . . E 3 55.664 134.231 76.592 1 39.51 ? O1 EDO 341 A 1 HETATM 3 C C2 EDO . . . E 3 54.395 133.758 78.681 1 39.24 ? C2 EDO 341 A 1 HETATM 4 O O2 EDO . . . E 3 53.483 134.553 79.433 1 39.35 ? O2 EDO 341 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #