data_2G1Q # _model_server_result.job_id SAwBGiQ_oDPDyW8DdD1Z_g _model_server_result.datetime_utc '2024-10-22 03:42:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":600}' # _entry.id 2G1Q # _exptl.entry_id 2G1Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G1Q _cell.length_a 68.68 _cell.length_b 79.64 _cell.length_c 158.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G1Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 112 A THR 112 1_555 C MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc2 D O1B ADP . A ADP 601 1_555 C MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? metalc ? metalc3 D O3B ADP . A ADP 601 1_555 C MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc4 C MG MG . A MG 603 1_555 I O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc5 C MG MG . A MG 603 1_555 I O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc6 B OG1 THR 112 B THR 112 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc7 G O1B ADP . B ADP 600 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? metalc ? metalc8 G O3B ADP . B ADP 600 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc9 F MG MG . B MG 602 1_555 J O HOH . B HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2G1Q _atom_sites.fract_transf_matrix[1][1] 0.01456 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012557 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006301 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 603 603 MG MG . D 3 ADP A 1 601 601 ADP ADP . E 4 N9H A 1 604 604 N9H NAT . F 2 MG B 1 602 602 MG MG . G 3 ADP B 1 600 600 ADP ADP . H 4 N9H B 1 605 605 N9H NAT . I 5 HOH A 1 605 1 HOH HOH . I 5 HOH A 2 606 3 HOH HOH . I 5 HOH A 3 607 5 HOH HOH . I 5 HOH A 4 608 7 HOH HOH . I 5 HOH A 5 609 9 HOH HOH . I 5 HOH A 6 610 11 HOH HOH . I 5 HOH A 7 611 12 HOH HOH . I 5 HOH A 8 612 13 HOH HOH . I 5 HOH A 9 613 15 HOH HOH . I 5 HOH A 10 614 16 HOH HOH . I 5 HOH A 11 615 17 HOH HOH . I 5 HOH A 12 616 18 HOH HOH . I 5 HOH A 13 617 21 HOH HOH . I 5 HOH A 14 618 22 HOH HOH . I 5 HOH A 15 619 30 HOH HOH . I 5 HOH A 16 620 31 HOH HOH . I 5 HOH A 17 621 33 HOH HOH . I 5 HOH A 18 622 36 HOH HOH . I 5 HOH A 19 623 38 HOH HOH . I 5 HOH A 20 624 43 HOH HOH . I 5 HOH A 21 625 45 HOH HOH . I 5 HOH A 22 626 48 HOH HOH . I 5 HOH A 23 627 52 HOH HOH . I 5 HOH A 24 628 56 HOH HOH . I 5 HOH A 25 629 60 HOH HOH . I 5 HOH A 26 630 61 HOH HOH . I 5 HOH A 27 631 62 HOH HOH . I 5 HOH A 28 632 63 HOH HOH . I 5 HOH A 29 633 64 HOH HOH . I 5 HOH A 30 634 65 HOH HOH . I 5 HOH A 31 635 66 HOH HOH . I 5 HOH A 32 636 68 HOH HOH . I 5 HOH A 33 637 69 HOH HOH . I 5 HOH A 34 638 70 HOH HOH . I 5 HOH A 35 639 71 HOH HOH . I 5 HOH A 36 640 72 HOH HOH . I 5 HOH A 37 641 73 HOH HOH . I 5 HOH A 38 642 75 HOH HOH . I 5 HOH A 39 643 77 HOH HOH . I 5 HOH A 40 644 78 HOH HOH . I 5 HOH A 41 645 80 HOH HOH . I 5 HOH A 42 646 81 HOH HOH . I 5 HOH A 43 647 82 HOH HOH . I 5 HOH A 44 648 83 HOH HOH . I 5 HOH A 45 649 84 HOH HOH . I 5 HOH A 46 650 85 HOH HOH . I 5 HOH A 47 651 86 HOH HOH . I 5 HOH A 48 652 87 HOH HOH . I 5 HOH A 49 653 88 HOH HOH . I 5 HOH A 50 654 91 HOH HOH . I 5 HOH A 51 655 92 HOH HOH . I 5 HOH A 52 656 93 HOH HOH . I 5 HOH A 53 657 94 HOH HOH . I 5 HOH A 54 658 98 HOH HOH . I 5 HOH A 55 659 100 HOH HOH . I 5 HOH A 56 660 101 HOH HOH . I 5 HOH A 57 661 102 HOH HOH . I 5 HOH A 58 662 105 HOH HOH . I 5 HOH A 59 663 106 HOH HOH . I 5 HOH A 60 664 107 HOH HOH . I 5 HOH A 61 665 113 HOH HOH . I 5 HOH A 62 666 116 HOH HOH . I 5 HOH A 63 667 120 HOH HOH . I 5 HOH A 64 668 121 HOH HOH . I 5 HOH A 65 669 124 HOH HOH . I 5 HOH A 66 670 126 HOH HOH . I 5 HOH A 67 671 131 HOH HOH . I 5 HOH A 68 672 132 HOH HOH . I 5 HOH A 69 673 133 HOH HOH . I 5 HOH A 70 674 135 HOH HOH . I 5 HOH A 71 675 136 HOH HOH . I 5 HOH A 72 676 137 HOH HOH . I 5 HOH A 73 677 138 HOH HOH . I 5 HOH A 74 678 139 HOH HOH . I 5 HOH A 75 679 140 HOH HOH . I 5 HOH A 76 680 142 HOH HOH . I 5 HOH A 77 681 143 HOH HOH . I 5 HOH A 78 682 145 HOH HOH . I 5 HOH A 79 683 146 HOH HOH . I 5 HOH A 80 684 150 HOH HOH . I 5 HOH A 81 685 152 HOH HOH . I 5 HOH A 82 686 157 HOH HOH . I 5 HOH A 83 687 158 HOH HOH . I 5 HOH A 84 688 159 HOH HOH . I 5 HOH A 85 689 162 HOH HOH . I 5 HOH A 86 690 163 HOH HOH . I 5 HOH A 87 691 164 HOH HOH . I 5 HOH A 88 692 165 HOH HOH . I 5 HOH A 89 693 166 HOH HOH . I 5 HOH A 90 694 169 HOH HOH . J 5 HOH B 1 606 2 HOH HOH . J 5 HOH B 2 607 4 HOH HOH . J 5 HOH B 3 608 6 HOH HOH . J 5 HOH B 4 609 8 HOH HOH . J 5 HOH B 5 610 10 HOH HOH . J 5 HOH B 6 611 14 HOH HOH . J 5 HOH B 7 612 19 HOH HOH . J 5 HOH B 8 613 20 HOH HOH . J 5 HOH B 9 614 23 HOH HOH . J 5 HOH B 10 615 24 HOH HOH . J 5 HOH B 11 616 25 HOH HOH . J 5 HOH B 12 617 26 HOH HOH . J 5 HOH B 13 618 27 HOH HOH . J 5 HOH B 14 619 28 HOH HOH . J 5 HOH B 15 620 29 HOH HOH . J 5 HOH B 16 621 32 HOH HOH . J 5 HOH B 17 622 34 HOH HOH . J 5 HOH B 18 623 35 HOH HOH . J 5 HOH B 19 624 37 HOH HOH . J 5 HOH B 20 625 39 HOH HOH . J 5 HOH B 21 626 40 HOH HOH . J 5 HOH B 22 627 41 HOH HOH . J 5 HOH B 23 628 42 HOH HOH . J 5 HOH B 24 629 44 HOH HOH . J 5 HOH B 25 630 46 HOH HOH . J 5 HOH B 26 631 47 HOH HOH . J 5 HOH B 27 632 49 HOH HOH . J 5 HOH B 28 633 50 HOH HOH . J 5 HOH B 29 634 51 HOH HOH . J 5 HOH B 30 635 53 HOH HOH . J 5 HOH B 31 636 54 HOH HOH . J 5 HOH B 32 637 55 HOH HOH . J 5 HOH B 33 638 57 HOH HOH . J 5 HOH B 34 639 58 HOH HOH . J 5 HOH B 35 640 59 HOH HOH . J 5 HOH B 36 641 67 HOH HOH . J 5 HOH B 37 642 74 HOH HOH . J 5 HOH B 38 643 76 HOH HOH . J 5 HOH B 39 644 79 HOH HOH . J 5 HOH B 40 645 89 HOH HOH . J 5 HOH B 41 646 90 HOH HOH . J 5 HOH B 42 647 95 HOH HOH . J 5 HOH B 43 648 96 HOH HOH . J 5 HOH B 44 649 97 HOH HOH . J 5 HOH B 45 650 99 HOH HOH . J 5 HOH B 46 651 103 HOH HOH . J 5 HOH B 47 652 104 HOH HOH . J 5 HOH B 48 653 108 HOH HOH . J 5 HOH B 49 654 109 HOH HOH . J 5 HOH B 50 655 110 HOH HOH . J 5 HOH B 51 656 111 HOH HOH . J 5 HOH B 52 657 112 HOH HOH . J 5 HOH B 53 658 114 HOH HOH . J 5 HOH B 54 659 115 HOH HOH . J 5 HOH B 55 660 117 HOH HOH . J 5 HOH B 56 661 118 HOH HOH . J 5 HOH B 57 662 119 HOH HOH . J 5 HOH B 58 663 122 HOH HOH . J 5 HOH B 59 664 123 HOH HOH . J 5 HOH B 60 665 125 HOH HOH . J 5 HOH B 61 666 127 HOH HOH . J 5 HOH B 62 667 128 HOH HOH . J 5 HOH B 63 668 129 HOH HOH . J 5 HOH B 64 669 130 HOH HOH . J 5 HOH B 65 670 134 HOH HOH . J 5 HOH B 66 671 141 HOH HOH . J 5 HOH B 67 672 144 HOH HOH . J 5 HOH B 68 673 147 HOH HOH . J 5 HOH B 69 674 148 HOH HOH . J 5 HOH B 70 675 149 HOH HOH . J 5 HOH B 71 676 151 HOH HOH . J 5 HOH B 72 677 153 HOH HOH . J 5 HOH B 73 678 154 HOH HOH . J 5 HOH B 74 679 155 HOH HOH . J 5 HOH B 75 680 156 HOH HOH . J 5 HOH B 76 681 160 HOH HOH . J 5 HOH B 77 682 161 HOH HOH . J 5 HOH B 78 683 167 HOH HOH . J 5 HOH B 79 684 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . G 3 44.213 6.995 59.851 1 21.96 ? PB ADP 600 B 1 HETATM 2 O O1B ADP . . . G 3 44.706 7.669 61.097 1 26.54 ? O1B ADP 600 B 1 HETATM 3 O O2B ADP . . . G 3 43.698 5.535 60.169 1 24.42 ? O2B ADP 600 B 1 HETATM 4 O O3B ADP . . . G 3 43.131 7.791 59.214 1 22.46 ? O3B ADP 600 B 1 HETATM 5 P PA ADP . . . G 3 45.652 7.492 57.479 1 30.77 ? PA ADP 600 B 1 HETATM 6 O O1A ADP . . . G 3 44.647 7.086 56.511 1 31.32 ? O1A ADP 600 B 1 HETATM 7 O O2A ADP . . . G 3 45.603 8.949 57.651 1 31.28 ? O2A ADP 600 B 1 HETATM 8 O O3A ADP . . . G 3 45.386 6.801 58.848 1 26.95 ? O3A ADP 600 B 1 HETATM 9 O O5' ADP . . . G 3 47.082 7.14 56.932 1 33.36 ? O5' ADP 600 B 1 HETATM 10 C C5' ADP . . . G 3 48.111 6.34 57.485 1 39.08 ? C5' ADP 600 B 1 HETATM 11 C C4' ADP . . . G 3 49.273 6.388 56.427 1 42.51 ? C4' ADP 600 B 1 HETATM 12 O O4' ADP . . . G 3 49.295 5.1 55.81 1 43.18 ? O4' ADP 600 B 1 HETATM 13 C C3' ADP . . . G 3 49.091 7.398 55.266 1 42.66 ? C3' ADP 600 B 1 HETATM 14 O O3' ADP . . . G 3 50.266 8.193 55.071 1 44.99 ? O3' ADP 600 B 1 HETATM 15 C C2' ADP . . . G 3 48.741 6.588 54.014 1 45.2 ? C2' ADP 600 B 1 HETATM 16 O O2' ADP . . . G 3 49.341 7.085 52.811 1 46.23 ? O2' ADP 600 B 1 HETATM 17 C C1' ADP . . . G 3 49.137 5.172 54.375 1 46.57 ? C1' ADP 600 B 1 HETATM 18 N N9 ADP . . . G 3 48.113 4.149 53.994 1 49.28 ? N9 ADP 600 B 1 HETATM 19 C C8 ADP . . . G 3 47.114 3.715 54.806 1 50.03 ? C8 ADP 600 B 1 HETATM 20 N N7 ADP . . . G 3 46.394 2.814 54.178 1 52.56 ? N7 ADP 600 B 1 HETATM 21 C C5 ADP . . . G 3 46.897 2.644 52.979 1 53.23 ? C5 ADP 600 B 1 HETATM 22 C C6 ADP . . . G 3 46.582 1.851 51.882 1 53.19 ? C6 ADP 600 B 1 HETATM 23 N N6 ADP . . . G 3 45.544 1.01 51.96 1 56.07 ? N6 ADP 600 B 1 HETATM 24 N N1 ADP . . . G 3 47.343 1.922 50.723 1 53.91 ? N1 ADP 600 B 1 HETATM 25 C C2 ADP . . . G 3 48.416 2.765 50.601 1 53.84 ? C2 ADP 600 B 1 HETATM 26 N N3 ADP . . . G 3 48.735 3.544 51.665 1 52.92 ? N3 ADP 600 B 1 HETATM 27 C C4 ADP . . . G 3 48.011 3.518 52.843 1 51.79 ? C4 ADP 600 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 27 #