data_2G1Q # _model_server_result.job_id hze2w7v8wYZB45X1tvZ4cg _model_server_result.datetime_utc '2024-10-22 03:25:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 2G1Q # _exptl.entry_id 2G1Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.438 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5S)-5-(3-AMINOPROPYL)-3-(2,5-DIFLUOROPHENYL)-N-ETHYL-5-PHENYL-4,5-DIHYDRO-1H-PYRAZOLE-1-CARBOXAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G1Q _cell.length_a 68.68 _cell.length_b 79.64 _cell.length_c 158.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G1Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 112 A THR 112 1_555 C MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc2 D O1B ADP . A ADP 601 1_555 C MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? metalc ? metalc3 D O3B ADP . A ADP 601 1_555 C MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc4 C MG MG . A MG 603 1_555 I O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc5 C MG MG . A MG 603 1_555 I O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc6 B OG1 THR 112 B THR 112 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc7 G O1B ADP . B ADP 600 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? metalc ? metalc8 G O3B ADP . B ADP 600 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc9 F MG MG . B MG 602 1_555 J O HOH . B HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? # _chem_comp.formula 'C21 H24 F2 N4 O' _chem_comp.formula_weight 386.438 _chem_comp.id N9H _chem_comp.mon_nstd_flag . _chem_comp.name (5S)-5-(3-AMINOPROPYL)-3-(2,5-DIFLUOROPHENYL)-N-ETHYL-5-PHENYL-4,5-DIHYDRO-1H-PYRAZOLE-1-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 N9H doub 281 n y C1 C6 N9H sing 282 n y C1 F41 N9H sing 283 n n C2 C3 N9H sing 284 n y C2 H2 N9H sing 285 n n C3 C4 N9H doub 286 n y C3 C10 N9H sing 287 n n C4 C5 N9H sing 288 n y C4 F40 N9H sing 289 n n C5 C6 N9H doub 290 n y C5 H5 N9H sing 291 n n C6 H6 N9H sing 292 n n C10 N1 N9H doub 293 n n C10 C14 N9H sing 294 n n N1 N12 N9H sing 295 n n N12 C13 N9H sing 296 n n N12 C29 N9H sing 297 n n C13 C14 N9H sing 298 n n C13 C17 N9H sing 299 n n C13 C7 N9H sing 300 n n C14 H141 N9H sing 301 n n C14 H142 N9H sing 302 n n C17 C19 N9H sing 303 n y C17 C23 N9H doub 304 n y C19 C20 N9H doub 305 n y C19 H19 N9H sing 306 n n C20 C21 N9H sing 307 n y C20 H20 N9H sing 308 n n C21 C22 N9H doub 309 n y C21 H21 N9H sing 310 n n C22 C23 N9H sing 311 n y C22 H22 N9H sing 312 n n C23 H23 N9H sing 313 n n C29 N30 N9H sing 314 n n C29 O39 N9H doub 315 n n N30 C31 N9H sing 316 n n N30 HN30 N9H sing 317 n n C31 C9 N9H sing 318 n n C31 H311 N9H sing 319 n n C31 H312 N9H sing 320 n n C7 C8 N9H sing 321 n n C7 H71 N9H sing 322 n n C7 H72 N9H sing 323 n n C8 C11 N9H sing 324 n n C8 H81 N9H sing 325 n n C8 H82 N9H sing 326 n n C9 H91 N9H sing 327 n n C9 H92 N9H sing 328 n n C9 H93 N9H sing 329 n n C11 N2 N9H sing 330 n n C11 H111 N9H sing 331 n n C11 H112 N9H sing 332 n n N2 HN21 N9H sing 333 n n N2 HN22 N9H sing 334 n n # _atom_sites.entry_id 2G1Q _atom_sites.fract_transf_matrix[1][1] 0.01456 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012557 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006301 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 603 603 MG MG . D 3 ADP A 1 601 601 ADP ADP . E 4 N9H A 1 604 604 N9H NAT . F 2 MG B 1 602 602 MG MG . G 3 ADP B 1 600 600 ADP ADP . H 4 N9H B 1 605 605 N9H NAT . I 5 HOH A 1 605 1 HOH HOH . I 5 HOH A 2 606 3 HOH HOH . I 5 HOH A 3 607 5 HOH HOH . I 5 HOH A 4 608 7 HOH HOH . I 5 HOH A 5 609 9 HOH HOH . I 5 HOH A 6 610 11 HOH HOH . I 5 HOH A 7 611 12 HOH HOH . I 5 HOH A 8 612 13 HOH HOH . I 5 HOH A 9 613 15 HOH HOH . I 5 HOH A 10 614 16 HOH HOH . I 5 HOH A 11 615 17 HOH HOH . I 5 HOH A 12 616 18 HOH HOH . I 5 HOH A 13 617 21 HOH HOH . I 5 HOH A 14 618 22 HOH HOH . I 5 HOH A 15 619 30 HOH HOH . I 5 HOH A 16 620 31 HOH HOH . I 5 HOH A 17 621 33 HOH HOH . I 5 HOH A 18 622 36 HOH HOH . I 5 HOH A 19 623 38 HOH HOH . I 5 HOH A 20 624 43 HOH HOH . I 5 HOH A 21 625 45 HOH HOH . I 5 HOH A 22 626 48 HOH HOH . I 5 HOH A 23 627 52 HOH HOH . I 5 HOH A 24 628 56 HOH HOH . I 5 HOH A 25 629 60 HOH HOH . I 5 HOH A 26 630 61 HOH HOH . I 5 HOH A 27 631 62 HOH HOH . I 5 HOH A 28 632 63 HOH HOH . I 5 HOH A 29 633 64 HOH HOH . I 5 HOH A 30 634 65 HOH HOH . I 5 HOH A 31 635 66 HOH HOH . I 5 HOH A 32 636 68 HOH HOH . I 5 HOH A 33 637 69 HOH HOH . I 5 HOH A 34 638 70 HOH HOH . I 5 HOH A 35 639 71 HOH HOH . I 5 HOH A 36 640 72 HOH HOH . I 5 HOH A 37 641 73 HOH HOH . I 5 HOH A 38 642 75 HOH HOH . I 5 HOH A 39 643 77 HOH HOH . I 5 HOH A 40 644 78 HOH HOH . I 5 HOH A 41 645 80 HOH HOH . I 5 HOH A 42 646 81 HOH HOH . I 5 HOH A 43 647 82 HOH HOH . I 5 HOH A 44 648 83 HOH HOH . I 5 HOH A 45 649 84 HOH HOH . I 5 HOH A 46 650 85 HOH HOH . I 5 HOH A 47 651 86 HOH HOH . I 5 HOH A 48 652 87 HOH HOH . I 5 HOH A 49 653 88 HOH HOH . I 5 HOH A 50 654 91 HOH HOH . I 5 HOH A 51 655 92 HOH HOH . I 5 HOH A 52 656 93 HOH HOH . I 5 HOH A 53 657 94 HOH HOH . I 5 HOH A 54 658 98 HOH HOH . I 5 HOH A 55 659 100 HOH HOH . I 5 HOH A 56 660 101 HOH HOH . I 5 HOH A 57 661 102 HOH HOH . I 5 HOH A 58 662 105 HOH HOH . I 5 HOH A 59 663 106 HOH HOH . I 5 HOH A 60 664 107 HOH HOH . I 5 HOH A 61 665 113 HOH HOH . I 5 HOH A 62 666 116 HOH HOH . I 5 HOH A 63 667 120 HOH HOH . I 5 HOH A 64 668 121 HOH HOH . I 5 HOH A 65 669 124 HOH HOH . I 5 HOH A 66 670 126 HOH HOH . I 5 HOH A 67 671 131 HOH HOH . I 5 HOH A 68 672 132 HOH HOH . I 5 HOH A 69 673 133 HOH HOH . I 5 HOH A 70 674 135 HOH HOH . I 5 HOH A 71 675 136 HOH HOH . I 5 HOH A 72 676 137 HOH HOH . I 5 HOH A 73 677 138 HOH HOH . I 5 HOH A 74 678 139 HOH HOH . I 5 HOH A 75 679 140 HOH HOH . I 5 HOH A 76 680 142 HOH HOH . I 5 HOH A 77 681 143 HOH HOH . I 5 HOH A 78 682 145 HOH HOH . I 5 HOH A 79 683 146 HOH HOH . I 5 HOH A 80 684 150 HOH HOH . I 5 HOH A 81 685 152 HOH HOH . I 5 HOH A 82 686 157 HOH HOH . I 5 HOH A 83 687 158 HOH HOH . I 5 HOH A 84 688 159 HOH HOH . I 5 HOH A 85 689 162 HOH HOH . I 5 HOH A 86 690 163 HOH HOH . I 5 HOH A 87 691 164 HOH HOH . I 5 HOH A 88 692 165 HOH HOH . I 5 HOH A 89 693 166 HOH HOH . I 5 HOH A 90 694 169 HOH HOH . J 5 HOH B 1 606 2 HOH HOH . J 5 HOH B 2 607 4 HOH HOH . J 5 HOH B 3 608 6 HOH HOH . J 5 HOH B 4 609 8 HOH HOH . J 5 HOH B 5 610 10 HOH HOH . J 5 HOH B 6 611 14 HOH HOH . J 5 HOH B 7 612 19 HOH HOH . J 5 HOH B 8 613 20 HOH HOH . J 5 HOH B 9 614 23 HOH HOH . J 5 HOH B 10 615 24 HOH HOH . J 5 HOH B 11 616 25 HOH HOH . J 5 HOH B 12 617 26 HOH HOH . J 5 HOH B 13 618 27 HOH HOH . J 5 HOH B 14 619 28 HOH HOH . J 5 HOH B 15 620 29 HOH HOH . J 5 HOH B 16 621 32 HOH HOH . J 5 HOH B 17 622 34 HOH HOH . J 5 HOH B 18 623 35 HOH HOH . J 5 HOH B 19 624 37 HOH HOH . J 5 HOH B 20 625 39 HOH HOH . J 5 HOH B 21 626 40 HOH HOH . J 5 HOH B 22 627 41 HOH HOH . J 5 HOH B 23 628 42 HOH HOH . J 5 HOH B 24 629 44 HOH HOH . J 5 HOH B 25 630 46 HOH HOH . J 5 HOH B 26 631 47 HOH HOH . J 5 HOH B 27 632 49 HOH HOH . J 5 HOH B 28 633 50 HOH HOH . J 5 HOH B 29 634 51 HOH HOH . J 5 HOH B 30 635 53 HOH HOH . J 5 HOH B 31 636 54 HOH HOH . J 5 HOH B 32 637 55 HOH HOH . J 5 HOH B 33 638 57 HOH HOH . J 5 HOH B 34 639 58 HOH HOH . J 5 HOH B 35 640 59 HOH HOH . J 5 HOH B 36 641 67 HOH HOH . J 5 HOH B 37 642 74 HOH HOH . J 5 HOH B 38 643 76 HOH HOH . J 5 HOH B 39 644 79 HOH HOH . J 5 HOH B 40 645 89 HOH HOH . J 5 HOH B 41 646 90 HOH HOH . J 5 HOH B 42 647 95 HOH HOH . J 5 HOH B 43 648 96 HOH HOH . J 5 HOH B 44 649 97 HOH HOH . J 5 HOH B 45 650 99 HOH HOH . J 5 HOH B 46 651 103 HOH HOH . J 5 HOH B 47 652 104 HOH HOH . J 5 HOH B 48 653 108 HOH HOH . J 5 HOH B 49 654 109 HOH HOH . J 5 HOH B 50 655 110 HOH HOH . J 5 HOH B 51 656 111 HOH HOH . J 5 HOH B 52 657 112 HOH HOH . J 5 HOH B 53 658 114 HOH HOH . J 5 HOH B 54 659 115 HOH HOH . J 5 HOH B 55 660 117 HOH HOH . J 5 HOH B 56 661 118 HOH HOH . J 5 HOH B 57 662 119 HOH HOH . J 5 HOH B 58 663 122 HOH HOH . J 5 HOH B 59 664 123 HOH HOH . J 5 HOH B 60 665 125 HOH HOH . J 5 HOH B 61 666 127 HOH HOH . J 5 HOH B 62 667 128 HOH HOH . J 5 HOH B 63 668 129 HOH HOH . J 5 HOH B 64 669 130 HOH HOH . J 5 HOH B 65 670 134 HOH HOH . J 5 HOH B 66 671 141 HOH HOH . J 5 HOH B 67 672 144 HOH HOH . J 5 HOH B 68 673 147 HOH HOH . J 5 HOH B 69 674 148 HOH HOH . J 5 HOH B 70 675 149 HOH HOH . J 5 HOH B 71 676 151 HOH HOH . J 5 HOH B 72 677 153 HOH HOH . J 5 HOH B 73 678 154 HOH HOH . J 5 HOH B 74 679 155 HOH HOH . J 5 HOH B 75 680 156 HOH HOH . J 5 HOH B 76 681 160 HOH HOH . J 5 HOH B 77 682 161 HOH HOH . J 5 HOH B 78 683 167 HOH HOH . J 5 HOH B 79 684 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 N9H . . . E 4 22.146 16.572 105.43 1 41.2 ? C1 N9H 604 A 1 HETATM 2 C C2 N9H . . . E 4 21.031 16.587 106.328 1 40.15 ? C2 N9H 604 A 1 HETATM 3 C C3 N9H . . . E 4 20.872 15.424 107.161 1 39.68 ? C3 N9H 604 A 1 HETATM 4 C C4 N9H . . . E 4 21.867 14.375 107.043 1 37.54 ? C4 N9H 604 A 1 HETATM 5 C C5 N9H . . . E 4 22.967 14.371 106.126 1 36.55 ? C5 N9H 604 A 1 HETATM 6 C C6 N9H . . . E 4 23.091 15.507 105.286 1 39.22 ? C6 N9H 604 A 1 HETATM 7 C C10 N9H . . . E 4 19.711 15.336 108.11 1 40.38 ? C10 N9H 604 A 1 HETATM 8 N N1 N9H . . . E 4 19.018 16.361 108.624 1 40.67 ? N1 N9H 604 A 1 HETATM 9 N N12 N9H . . . E 4 18.103 15.979 109.587 1 43.32 ? N12 N9H 604 A 1 HETATM 10 C C13 N9H . . . E 4 18.015 14.518 109.645 1 41.32 ? C13 N9H 604 A 1 HETATM 11 C C14 N9H . . . E 4 19.316 14.144 108.959 1 39.06 ? C14 N9H 604 A 1 HETATM 12 C C17 N9H . . . E 4 18.057 14.009 111.1 1 40.97 ? C17 N9H 604 A 1 HETATM 13 C C19 N9H . . . E 4 17.245 12.882 111.565 1 41.89 ? C19 N9H 604 A 1 HETATM 14 C C20 N9H . . . E 4 17.382 12.372 112.947 1 41.1 ? C20 N9H 604 A 1 HETATM 15 C C21 N9H . . . E 4 18.329 13.023 113.859 1 40.3 ? C21 N9H 604 A 1 HETATM 16 C C22 N9H . . . E 4 19.123 14.155 113.434 1 39.49 ? C22 N9H 604 A 1 HETATM 17 C C23 N9H . . . E 4 18.965 14.647 112.054 1 41.59 ? C23 N9H 604 A 1 HETATM 18 C C29 N9H . . . E 4 17.076 16.816 110.108 1 44.02 ? C29 N9H 604 A 1 HETATM 19 N N30 N9H . . . E 4 17.177 18.173 110.016 1 45.58 ? N30 N9H 604 A 1 HETATM 20 C C31 N9H . . . E 4 16.094 19.15 110.276 1 45.04 ? C31 N9H 604 A 1 HETATM 21 O O39 N9H . . . E 4 16.14 16.216 110.623 1 46.87 ? O39 N9H 604 A 1 HETATM 22 F F40 N9H . . . E 4 21.786 13.345 107.864 1 32.62 ? F40 N9H 604 A 1 HETATM 23 F F41 N9H . . . E 4 22.325 17.615 104.693 1 43.28 ? F41 N9H 604 A 1 HETATM 24 C C7 N9H . . . E 4 16.812 13.978 108.757 1 42.51 ? C7 N9H 604 A 1 HETATM 25 C C8 N9H . . . E 4 16.72 14.485 107.245 1 44.7 ? C8 N9H 604 A 1 HETATM 26 C C9 N9H . . . E 4 15.113 19.248 109.105 1 43.57 ? C9 N9H 604 A 1 HETATM 27 C C11 N9H . . . E 4 15.687 13.962 106.135 1 45.01 ? C11 N9H 604 A 1 HETATM 28 N N2 N9H . . . E 4 15.887 12.584 105.632 1 44.31 ? N2 N9H 604 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 374 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #