data_2G22 # _model_server_result.job_id nqjOGFdKKZaSP6owLXHifw _model_server_result.datetime_utc '2024-11-22 08:03:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g22 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":986}' # _entry.id 2G22 # _exptl.entry_id 2G22 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G22 _cell.length_a 141.583 _cell.length_b 141.583 _cell.length_c 141.583 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G22 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA trimeric 3 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 B,E,F,H 3 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_645 -z+1,x-1/2,-y+1/2 0 0 -1 1 0 0 0 -1 0 141.583 -70.7915 70.7915 3 'crystal symmetry operation' 11_556 y+1/2,-z+1/2,-x+1 0 1 0 0 0 -1 -1 0 0 70.7915 70.7915 141.583 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 44 A CYS 46 1_555 A SG CYS 51 A CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 210 A CYS 212 1_555 A SG CYS 214 A CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 252 A CYS 254 1_555 A SG CYS 289 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 B SG CYS 44 B CYS 46 1_555 B SG CYS 51 B CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 B SG CYS 210 B CYS 212 1_555 B SG CYS 214 B CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 B SG CYS 252 B CYS 254 1_555 B SG CYS 289 B CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 68 A ASN 70 1_555 C C1 NAG . A NAG 985 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 B ND2 ASN 68 B ASN 70 1_555 E C1 NAG . B NAG 986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 308 n n C1 O1 NAG sing 309 n n C1 O5 NAG sing 310 n n C1 H1 NAG sing 311 n n C2 C3 NAG sing 312 n n C2 N2 NAG sing 313 n n C2 H2 NAG sing 314 n n C3 C4 NAG sing 315 n n C3 O3 NAG sing 316 n n C3 H3 NAG sing 317 n n C4 C5 NAG sing 318 n n C4 O4 NAG sing 319 n n C4 H4 NAG sing 320 n n C5 C6 NAG sing 321 n n C5 O5 NAG sing 322 n n C5 H5 NAG sing 323 n n C6 O6 NAG sing 324 n n C6 H61 NAG sing 325 n n C6 H62 NAG sing 326 n n C7 C8 NAG sing 327 n n C7 N2 NAG sing 328 n n C7 O7 NAG doub 329 n n C8 H81 NAG sing 330 n n C8 H82 NAG sing 331 n n C8 H83 NAG sing 332 n n N2 HN2 NAG sing 333 n n O1 HO1 NAG sing 334 n n O3 HO3 NAG sing 335 n n O4 HO4 NAG sing 336 n n O6 HO6 NAG sing 337 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2G22 _atom_sites.fract_transf_matrix[1][1] 0.007046 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007046 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007046 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 985 985 NAG NAG . D 3 6IG A 1 885 885 6IG 6IG . E 2 NAG B 1 986 985 NAG NAG . F 3 6IG B 1 886 885 6IG 6IG . G 4 HOH A 1 986 1 HOH TIP . G 4 HOH A 2 987 2 HOH TIP . G 4 HOH A 3 988 3 HOH TIP . G 4 HOH A 4 989 4 HOH TIP . G 4 HOH A 5 990 5 HOH TIP . G 4 HOH A 6 991 6 HOH TIP . G 4 HOH A 7 992 7 HOH TIP . G 4 HOH A 8 993 8 HOH TIP . G 4 HOH A 9 994 9 HOH TIP . G 4 HOH A 10 995 11 HOH TIP . G 4 HOH A 11 996 12 HOH TIP . G 4 HOH A 12 997 13 HOH TIP . G 4 HOH A 13 998 14 HOH TIP . G 4 HOH A 14 999 15 HOH TIP . G 4 HOH A 15 1000 18 HOH TIP . G 4 HOH A 16 1001 20 HOH TIP . G 4 HOH A 17 1002 24 HOH TIP . G 4 HOH A 18 1003 26 HOH TIP . G 4 HOH A 19 1004 27 HOH TIP . G 4 HOH A 20 1005 31 HOH TIP . G 4 HOH A 21 1006 33 HOH TIP . G 4 HOH A 22 1007 36 HOH TIP . G 4 HOH A 23 1008 38 HOH TIP . G 4 HOH A 24 1009 42 HOH TIP . G 4 HOH A 25 1010 44 HOH TIP . G 4 HOH A 26 1011 45 HOH TIP . G 4 HOH A 27 1012 46 HOH TIP . G 4 HOH A 28 1013 47 HOH TIP . G 4 HOH A 29 1014 49 HOH TIP . G 4 HOH A 30 1015 52 HOH TIP . G 4 HOH A 31 1016 54 HOH TIP . G 4 HOH A 32 1017 55 HOH TIP . G 4 HOH A 33 1018 56 HOH TIP . G 4 HOH A 34 1019 57 HOH TIP . G 4 HOH A 35 1020 60 HOH TIP . G 4 HOH A 36 1021 61 HOH TIP . G 4 HOH A 37 1022 62 HOH TIP . G 4 HOH A 38 1023 63 HOH TIP . G 4 HOH A 39 1024 64 HOH TIP . G 4 HOH A 40 1025 68 HOH TIP . G 4 HOH A 41 1026 69 HOH TIP . G 4 HOH A 42 1027 71 HOH TIP . G 4 HOH A 43 1028 73 HOH TIP . G 4 HOH A 44 1029 74 HOH TIP . G 4 HOH A 45 1030 75 HOH TIP . G 4 HOH A 46 1031 76 HOH TIP . G 4 HOH A 47 1032 78 HOH TIP . G 4 HOH A 48 1033 79 HOH TIP . G 4 HOH A 49 1034 81 HOH TIP . G 4 HOH A 50 1035 82 HOH TIP . G 4 HOH A 51 1036 83 HOH TIP . G 4 HOH A 52 1037 84 HOH TIP . G 4 HOH A 53 1038 85 HOH TIP . H 4 HOH B 1 987 10 HOH TIP . H 4 HOH B 2 988 16 HOH TIP . H 4 HOH B 3 989 17 HOH TIP . H 4 HOH B 4 990 19 HOH TIP . H 4 HOH B 5 991 21 HOH TIP . H 4 HOH B 6 992 22 HOH TIP . H 4 HOH B 7 993 23 HOH TIP . H 4 HOH B 8 994 25 HOH TIP . H 4 HOH B 9 995 28 HOH TIP . H 4 HOH B 10 996 29 HOH TIP . H 4 HOH B 11 997 30 HOH TIP . H 4 HOH B 12 998 32 HOH TIP . H 4 HOH B 13 999 34 HOH TIP . H 4 HOH B 14 1000 35 HOH TIP . H 4 HOH B 15 1001 37 HOH TIP . H 4 HOH B 16 1002 39 HOH TIP . H 4 HOH B 17 1003 40 HOH TIP . H 4 HOH B 18 1004 41 HOH TIP . H 4 HOH B 19 1005 43 HOH TIP . H 4 HOH B 20 1006 48 HOH TIP . H 4 HOH B 21 1007 50 HOH TIP . H 4 HOH B 22 1008 51 HOH TIP . H 4 HOH B 23 1009 53 HOH TIP . H 4 HOH B 24 1010 58 HOH TIP . H 4 HOH B 25 1011 59 HOH TIP . H 4 HOH B 26 1012 65 HOH TIP . H 4 HOH B 27 1013 66 HOH TIP . H 4 HOH B 28 1014 67 HOH TIP . H 4 HOH B 29 1015 70 HOH TIP . H 4 HOH B 30 1016 72 HOH TIP . H 4 HOH B 31 1017 77 HOH TIP . H 4 HOH B 32 1018 80 HOH TIP . H 4 HOH B 33 1019 86 HOH TIP . H 4 HOH B 34 1020 87 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 2 147.251 9.024 49.335 1 78.87 ? C1 NAG 986 B 1 HETATM 2 C C2 NAG . . . E 2 148.684 8.57 49.682 1 79.7 ? C2 NAG 986 B 1 HETATM 3 C C3 NAG . . . E 2 149.587 8.582 48.44 1 81.01 ? C3 NAG 986 B 1 HETATM 4 C C4 NAG . . . E 2 148.928 7.848 47.272 1 81.68 ? C4 NAG 986 B 1 HETATM 5 C C5 NAG . . . E 2 147.537 8.424 47.03 1 82.1 ? C5 NAG 986 B 1 HETATM 6 C C6 NAG . . . E 2 146.811 7.709 45.909 1 83.51 ? C6 NAG 986 B 1 HETATM 7 C C7 NAG . . . E 2 149.138 9.165 51.978 1 79.79 ? C7 NAG 986 B 1 HETATM 8 C C8 NAG . . . E 2 148.565 10.249 52.88 1 79.19 ? C8 NAG 986 B 1 HETATM 9 N N2 NAG . . . E 2 149.257 9.45 50.684 1 79.7 ? N2 NAG 986 B 1 HETATM 10 O O3 NAG . . . E 2 150.828 7.963 48.748 1 81.59 ? O3 NAG 986 B 1 HETATM 11 O O4 NAG . . . E 2 149.719 7.992 46.1 1 81.51 ? O4 NAG 986 B 1 HETATM 12 O O5 NAG . . . E 2 146.738 8.275 48.221 1 81.08 ? O5 NAG 986 B 1 HETATM 13 O O6 NAG . . . E 2 147.659 6.762 45.273 1 85.95 ? O6 NAG 986 B 1 HETATM 14 O O7 NAG . . . E 2 149.466 8.079 52.457 1 79.75 ? O7 NAG 986 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #