data_2G25 # _model_server_result.job_id wTJeYaWs6rGeEbv-qIcOKw _model_server_result.datetime_utc '2024-11-14 09:20:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g25 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":887}' # _entry.id 2G25 # _exptl.entry_id 2G25 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 563.373 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-2-{(1S)-1-HYDROXY-1-[(R)-HYDROXY(METHOXY)PHOSPHORYL]ETHYL}-5-(2-{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-4-METHYL-1,3-THIAZOL-3-IUM _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.37 _cell.angle_gamma 90 _cell.entry_id 2G25 _cell.length_a 81.57 _cell.length_b 142.51 _cell.length_c 82.09 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G25 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 230 A ASP 230 1_555 G MG MG . B MG 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc2 A OD1 ASN 260 A ASN 260 1_555 G MG MG . B MG 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc3 A O GLN 262 A GLN 262 1_555 G MG MG . B MG 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc4 F O1A TDK . A TDK 887 1_555 C MG MG . A MG 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc5 F O1B TDK . A TDK 887 1_555 C MG MG . A MG 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc6 C MG MG . A MG 888 1_555 B OD1 ASP 230 B ASP 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc7 C MG MG . A MG 888 1_555 B OD1 ASN 260 B ASN 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc8 C MG MG . A MG 888 1_555 B O GLN 262 B GLN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc9 C MG MG . A MG 888 1_555 M O HOH . B HOH 896 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc10 K O1A TDK . B TDK 887 1_555 G MG MG . B MG 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc11 K O1B TDK . B TDK 887 1_555 G MG MG . B MG 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc12 G MG MG . B MG 888 1_555 M O HOH . B HOH 984 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? # _chem_comp.formula 'C15 H26 N4 O11 P3 S 1' _chem_comp.formula_weight 563.373 _chem_comp.id TDK _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-2-{(1S)-1-HYDROXY-1-[(R)-HYDROXY(METHOXY)PHOSPHORYL]ETHYL}-5-(2-{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-4-METHYL-1,3-THIAZOL-3-IUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-PHOSPHONOLACTYLTHIAMIN DIPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2B PB TDK sing 294 n n O2B H2B TDK sing 295 n n PB O3B TDK sing 296 n n PB O1B TDK doub 297 n n PB O3A TDK sing 298 n n O3B H3B TDK sing 299 n n O3A PA TDK sing 300 n n PA O1A TDK doub 301 n n PA O2A TDK sing 302 n n PA O7 TDK sing 303 n n O2A H2A TDK sing 304 n n O7 C7 TDK sing 305 n n C7 C6 TDK sing 306 n n C7 H71 TDK sing 307 n n C7 H72 TDK sing 308 n n C6 C5 TDK sing 309 n n C6 H61 TDK sing 310 n n C6 H62 TDK sing 311 n n C5 S1 TDK sing 312 n y C5 C4 TDK doub 313 n y S1 C2 TDK sing 314 n y C4 CM4 TDK sing 315 n n C4 N3 TDK sing 316 n y CM4 HM41 TDK sing 317 n n CM4 HM42 TDK sing 318 n n CM4 HM43 TDK sing 319 n n N3 C2 TDK doub 320 n y N3 C7' TDK sing 321 n n C2 CMA TDK sing 322 n n CMA OM1 TDK sing 323 n n CMA CMB TDK sing 324 n n CMA PC TDK sing 325 n n OM1 HM1 TDK sing 326 n n CMB HMB1 TDK sing 327 n n CMB HMB2 TDK sing 328 n n CMB HMB3 TDK sing 329 n n PC OM3 TDK sing 330 n n PC OM2 TDK sing 331 n n PC OM4 TDK doub 332 n n OM3 HM3 TDK sing 333 n n OM2 CMC TDK sing 334 n n CMC HMC1 TDK sing 335 n n CMC HMC2 TDK sing 336 n n CMC HMC3 TDK sing 337 n n C7' C5' TDK sing 338 n n C7' "H7'1" TDK sing 339 n n C7' "H7'2" TDK sing 340 n n C5' C6' TDK doub 341 n y C5' C4' TDK sing 342 n y C6' N1' TDK sing 343 n y C6' H6' TDK sing 344 n n N1' C2' TDK doub 345 n y C2' CM2 TDK sing 346 n n C2' N3' TDK sing 347 n y CM2 HM21 TDK sing 348 n n CM2 HM22 TDK sing 349 n n CM2 HM23 TDK sing 350 n n N3' C4' TDK doub 351 n y C4' N4' TDK sing 352 n n N4' "H4'1" TDK sing 353 n n N4' "H4'2" TDK sing 354 n n # _atom_sites.entry_id 2G25 _atom_sites.fract_transf_matrix[1][1] 0.012259 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002689 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007017 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012471 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 888 888 MG MG . D 3 PO4 A 1 889 566 PO4 PO4 . E 3 PO4 A 1 890 569 PO4 PO4 . F 4 TDK A 1 887 887 TDK TDK . G 2 MG B 1 888 888 MG MG . H 3 PO4 B 1 889 565 PO4 PO4 . I 3 PO4 B 1 890 567 PO4 PO4 . J 3 PO4 B 1 891 568 PO4 PO4 . K 4 TDK B 1 887 887 TDK TDK . L 5 HOH A 1 891 1 HOH HOH . L 5 HOH A 2 892 4 HOH HOH . L 5 HOH A 3 893 6 HOH HOH . L 5 HOH A 4 894 11 HOH HOH . L 5 HOH A 5 895 14 HOH HOH . L 5 HOH A 6 896 17 HOH HOH . L 5 HOH A 7 897 18 HOH HOH . L 5 HOH A 8 898 20 HOH HOH . L 5 HOH A 9 899 21 HOH HOH . L 5 HOH A 10 900 24 HOH HOH . L 5 HOH A 11 901 25 HOH HOH . L 5 HOH A 12 902 29 HOH HOH . L 5 HOH A 13 903 30 HOH HOH . L 5 HOH A 14 904 31 HOH HOH . L 5 HOH A 15 905 43 HOH HOH . L 5 HOH A 16 906 44 HOH HOH . L 5 HOH A 17 907 46 HOH HOH . L 5 HOH A 18 908 50 HOH HOH . L 5 HOH A 19 909 52 HOH HOH . L 5 HOH A 20 910 57 HOH HOH . L 5 HOH A 21 911 60 HOH HOH . L 5 HOH A 22 912 61 HOH HOH . L 5 HOH A 23 913 64 HOH HOH . L 5 HOH A 24 914 65 HOH HOH . L 5 HOH A 25 915 67 HOH HOH . L 5 HOH A 26 916 68 HOH HOH . L 5 HOH A 27 917 69 HOH HOH . L 5 HOH A 28 918 70 HOH HOH . L 5 HOH A 29 919 74 HOH HOH . L 5 HOH A 30 920 76 HOH HOH . L 5 HOH A 31 921 77 HOH HOH . L 5 HOH A 32 922 80 HOH HOH . L 5 HOH A 33 923 83 HOH HOH . L 5 HOH A 34 924 85 HOH HOH . L 5 HOH A 35 925 87 HOH HOH . L 5 HOH A 36 926 90 HOH HOH . L 5 HOH A 37 927 91 HOH HOH . L 5 HOH A 38 928 94 HOH HOH . L 5 HOH A 39 929 95 HOH HOH . L 5 HOH A 40 930 98 HOH HOH . L 5 HOH A 41 931 102 HOH HOH . L 5 HOH A 42 932 104 HOH HOH . L 5 HOH A 43 933 105 HOH HOH . L 5 HOH A 44 934 108 HOH HOH . L 5 HOH A 45 935 109 HOH HOH . L 5 HOH A 46 936 110 HOH HOH . L 5 HOH A 47 937 112 HOH HOH . L 5 HOH A 48 938 113 HOH HOH . L 5 HOH A 49 939 114 HOH HOH . L 5 HOH A 50 940 116 HOH HOH . L 5 HOH A 51 941 117 HOH HOH . L 5 HOH A 52 942 118 HOH HOH . L 5 HOH A 53 943 122 HOH HOH . L 5 HOH A 54 944 123 HOH HOH . L 5 HOH A 55 945 125 HOH HOH . L 5 HOH A 56 946 126 HOH HOH . L 5 HOH A 57 947 131 HOH HOH . L 5 HOH A 58 948 132 HOH HOH . L 5 HOH A 59 949 134 HOH HOH . L 5 HOH A 60 950 135 HOH HOH . L 5 HOH A 61 951 136 HOH HOH . L 5 HOH A 62 952 143 HOH HOH . L 5 HOH A 63 953 146 HOH HOH . L 5 HOH A 64 954 148 HOH HOH . L 5 HOH A 65 955 149 HOH HOH . L 5 HOH A 66 956 150 HOH HOH . L 5 HOH A 67 957 151 HOH HOH . L 5 HOH A 68 958 152 HOH HOH . L 5 HOH A 69 959 153 HOH HOH . L 5 HOH A 70 960 154 HOH HOH . L 5 HOH A 71 961 160 HOH HOH . L 5 HOH A 72 962 161 HOH HOH . L 5 HOH A 73 963 162 HOH HOH . L 5 HOH A 74 964 163 HOH HOH . L 5 HOH A 75 965 164 HOH HOH . L 5 HOH A 76 966 165 HOH HOH . L 5 HOH A 77 967 167 HOH HOH . L 5 HOH A 78 968 169 HOH HOH . L 5 HOH A 79 969 171 HOH HOH . L 5 HOH A 80 970 172 HOH HOH . L 5 HOH A 81 971 178 HOH HOH . L 5 HOH A 82 972 182 HOH HOH . L 5 HOH A 83 973 187 HOH HOH . L 5 HOH A 84 974 188 HOH HOH . L 5 HOH A 85 975 189 HOH HOH . L 5 HOH A 86 976 190 HOH HOH . L 5 HOH A 87 977 194 HOH HOH . L 5 HOH A 88 978 197 HOH HOH . L 5 HOH A 89 979 198 HOH HOH . L 5 HOH A 90 980 199 HOH HOH . L 5 HOH A 91 981 201 HOH HOH . L 5 HOH A 92 982 202 HOH HOH . L 5 HOH A 93 983 203 HOH HOH . L 5 HOH A 94 984 204 HOH HOH . L 5 HOH A 95 985 206 HOH HOH . L 5 HOH A 96 986 208 HOH HOH . L 5 HOH A 97 987 210 HOH HOH . L 5 HOH A 98 988 211 HOH HOH . L 5 HOH A 99 989 214 HOH HOH . L 5 HOH A 100 990 215 HOH HOH . L 5 HOH A 101 991 216 HOH HOH . L 5 HOH A 102 992 218 HOH HOH . L 5 HOH A 103 993 219 HOH HOH . L 5 HOH A 104 994 227 HOH HOH . L 5 HOH A 105 995 228 HOH HOH . L 5 HOH A 106 996 229 HOH HOH . L 5 HOH A 107 997 231 HOH HOH . L 5 HOH A 108 998 232 HOH HOH . L 5 HOH A 109 999 236 HOH HOH . L 5 HOH A 110 1000 237 HOH HOH . L 5 HOH A 111 1001 238 HOH HOH . L 5 HOH A 112 1002 243 HOH HOH . L 5 HOH A 113 1003 246 HOH HOH . L 5 HOH A 114 1004 247 HOH HOH . L 5 HOH A 115 1005 248 HOH HOH . L 5 HOH A 116 1006 249 HOH HOH . L 5 HOH A 117 1007 250 HOH HOH . L 5 HOH A 118 1008 251 HOH HOH . L 5 HOH A 119 1009 253 HOH HOH . L 5 HOH A 120 1010 256 HOH HOH . L 5 HOH A 121 1011 261 HOH HOH . L 5 HOH A 122 1012 263 HOH HOH . L 5 HOH A 123 1013 267 HOH HOH . L 5 HOH A 124 1014 269 HOH HOH . L 5 HOH A 125 1015 270 HOH HOH . L 5 HOH A 126 1016 273 HOH HOH . L 5 HOH A 127 1017 276 HOH HOH . L 5 HOH A 128 1018 277 HOH HOH . L 5 HOH A 129 1019 280 HOH HOH . L 5 HOH A 130 1020 281 HOH HOH . L 5 HOH A 131 1021 284 HOH HOH . L 5 HOH A 132 1022 285 HOH HOH . L 5 HOH A 133 1023 286 HOH HOH . L 5 HOH A 134 1024 287 HOH HOH . L 5 HOH A 135 1025 288 HOH HOH . L 5 HOH A 136 1026 291 HOH HOH . L 5 HOH A 137 1027 292 HOH HOH . L 5 HOH A 138 1028 298 HOH HOH . L 5 HOH A 139 1029 299 HOH HOH . L 5 HOH A 140 1030 301 HOH HOH . L 5 HOH A 141 1031 302 HOH HOH . L 5 HOH A 142 1032 307 HOH HOH . L 5 HOH A 143 1033 308 HOH HOH . L 5 HOH A 144 1034 309 HOH HOH . L 5 HOH A 145 1035 312 HOH HOH . L 5 HOH A 146 1036 315 HOH HOH . L 5 HOH A 147 1037 316 HOH HOH . L 5 HOH A 148 1038 318 HOH HOH . L 5 HOH A 149 1039 320 HOH HOH . L 5 HOH A 150 1040 321 HOH HOH . L 5 HOH A 151 1041 324 HOH HOH . L 5 HOH A 152 1042 325 HOH HOH . L 5 HOH A 153 1043 326 HOH HOH . L 5 HOH A 154 1044 329 HOH HOH . L 5 HOH A 155 1045 330 HOH HOH . L 5 HOH A 156 1046 331 HOH HOH . L 5 HOH A 157 1047 332 HOH HOH . L 5 HOH A 158 1048 333 HOH HOH . L 5 HOH A 159 1049 335 HOH HOH . L 5 HOH A 160 1050 336 HOH HOH . L 5 HOH A 161 1051 339 HOH HOH . L 5 HOH A 162 1052 341 HOH HOH . L 5 HOH A 163 1053 344 HOH HOH . L 5 HOH A 164 1054 345 HOH HOH . L 5 HOH A 165 1055 347 HOH HOH . L 5 HOH A 166 1056 349 HOH HOH . L 5 HOH A 167 1057 354 HOH HOH . L 5 HOH A 168 1058 356 HOH HOH . L 5 HOH A 169 1059 357 HOH HOH . L 5 HOH A 170 1060 358 HOH HOH . L 5 HOH A 171 1061 359 HOH HOH . L 5 HOH A 172 1062 361 HOH HOH . L 5 HOH A 173 1063 362 HOH HOH . L 5 HOH A 174 1064 365 HOH HOH . L 5 HOH A 175 1065 366 HOH HOH . L 5 HOH A 176 1066 367 HOH HOH . L 5 HOH A 177 1067 369 HOH HOH . L 5 HOH A 178 1068 374 HOH HOH . L 5 HOH A 179 1069 378 HOH HOH . L 5 HOH A 180 1070 379 HOH HOH . L 5 HOH A 181 1071 381 HOH HOH . L 5 HOH A 182 1072 383 HOH HOH . L 5 HOH A 183 1073 385 HOH HOH . L 5 HOH A 184 1074 386 HOH HOH . L 5 HOH A 185 1075 388 HOH HOH . L 5 HOH A 186 1076 389 HOH HOH . L 5 HOH A 187 1077 391 HOH HOH . L 5 HOH A 188 1078 393 HOH HOH . L 5 HOH A 189 1079 394 HOH HOH . L 5 HOH A 190 1080 395 HOH HOH . L 5 HOH A 191 1081 396 HOH HOH . L 5 HOH A 192 1082 398 HOH HOH . L 5 HOH A 193 1083 400 HOH HOH . L 5 HOH A 194 1084 401 HOH HOH . L 5 HOH A 195 1085 402 HOH HOH . L 5 HOH A 196 1086 403 HOH HOH . L 5 HOH A 197 1087 404 HOH HOH . L 5 HOH A 198 1088 405 HOH HOH . L 5 HOH A 199 1089 408 HOH HOH . L 5 HOH A 200 1090 411 HOH HOH . L 5 HOH A 201 1091 412 HOH HOH . L 5 HOH A 202 1092 413 HOH HOH . L 5 HOH A 203 1093 414 HOH HOH . L 5 HOH A 204 1094 416 HOH HOH . L 5 HOH A 205 1095 417 HOH HOH . L 5 HOH A 206 1096 420 HOH HOH . L 5 HOH A 207 1097 424 HOH HOH . L 5 HOH A 208 1098 425 HOH HOH . L 5 HOH A 209 1099 426 HOH HOH . L 5 HOH A 210 1100 427 HOH HOH . L 5 HOH A 211 1101 431 HOH HOH . L 5 HOH A 212 1102 432 HOH HOH . L 5 HOH A 213 1103 434 HOH HOH . L 5 HOH A 214 1104 435 HOH HOH . L 5 HOH A 215 1105 436 HOH HOH . L 5 HOH A 216 1106 437 HOH HOH . L 5 HOH A 217 1107 439 HOH HOH . L 5 HOH A 218 1108 441 HOH HOH . L 5 HOH A 219 1109 445 HOH HOH . L 5 HOH A 220 1110 452 HOH HOH . L 5 HOH A 221 1111 459 HOH HOH . L 5 HOH A 222 1112 460 HOH HOH . L 5 HOH A 223 1113 461 HOH HOH . L 5 HOH A 224 1114 462 HOH HOH . L 5 HOH A 225 1115 463 HOH HOH . L 5 HOH A 226 1116 464 HOH HOH . L 5 HOH A 227 1117 465 HOH HOH . L 5 HOH A 228 1118 466 HOH HOH . L 5 HOH A 229 1119 467 HOH HOH . L 5 HOH A 230 1120 468 HOH HOH . L 5 HOH A 231 1121 469 HOH HOH . L 5 HOH A 232 1122 474 HOH HOH . L 5 HOH A 233 1123 477 HOH HOH . L 5 HOH A 234 1124 480 HOH HOH . L 5 HOH A 235 1125 481 HOH HOH . L 5 HOH A 236 1126 487 HOH HOH . L 5 HOH A 237 1127 493 HOH HOH . L 5 HOH A 238 1128 494 HOH HOH . L 5 HOH A 239 1129 495 HOH HOH . L 5 HOH A 240 1130 496 HOH HOH . L 5 HOH A 241 1131 497 HOH HOH . L 5 HOH A 242 1132 499 HOH HOH . L 5 HOH A 243 1133 503 HOH HOH . L 5 HOH A 244 1134 504 HOH HOH . L 5 HOH A 245 1135 505 HOH HOH . L 5 HOH A 246 1136 506 HOH HOH . L 5 HOH A 247 1137 509 HOH HOH . L 5 HOH A 248 1138 511 HOH HOH . L 5 HOH A 249 1139 512 HOH HOH . L 5 HOH A 250 1140 516 HOH HOH . L 5 HOH A 251 1141 520 HOH HOH . L 5 HOH A 252 1142 523 HOH HOH . L 5 HOH A 253 1143 525 HOH HOH . L 5 HOH A 254 1144 528 HOH HOH . L 5 HOH A 255 1145 529 HOH HOH . L 5 HOH A 256 1146 533 HOH HOH . L 5 HOH A 257 1147 537 HOH HOH . L 5 HOH A 258 1148 541 HOH HOH . L 5 HOH A 259 1149 542 HOH HOH . L 5 HOH A 260 1150 543 HOH HOH . L 5 HOH A 261 1151 544 HOH HOH . L 5 HOH A 262 1152 546 HOH HOH . L 5 HOH A 263 1153 548 HOH HOH . L 5 HOH A 264 1154 549 HOH HOH . L 5 HOH A 265 1155 550 HOH HOH . L 5 HOH A 266 1156 551 HOH HOH . L 5 HOH A 267 1157 552 HOH HOH . L 5 HOH A 268 1158 554 HOH HOH . L 5 HOH A 269 1159 556 HOH HOH . L 5 HOH A 270 1160 560 HOH HOH . L 5 HOH A 271 1161 561 HOH HOH . L 5 HOH A 272 1162 562 HOH HOH . L 5 HOH A 273 1163 563 HOH HOH . M 5 HOH B 1 892 2 HOH HOH . M 5 HOH B 2 893 3 HOH HOH . M 5 HOH B 3 894 5 HOH HOH . M 5 HOH B 4 895 7 HOH HOH . M 5 HOH B 5 896 8 HOH HOH . M 5 HOH B 6 897 9 HOH HOH . M 5 HOH B 7 898 10 HOH HOH . M 5 HOH B 8 899 12 HOH HOH . M 5 HOH B 9 900 13 HOH HOH . M 5 HOH B 10 901 15 HOH HOH . M 5 HOH B 11 902 16 HOH HOH . M 5 HOH B 12 903 19 HOH HOH . M 5 HOH B 13 904 22 HOH HOH . M 5 HOH B 14 905 23 HOH HOH . M 5 HOH B 15 906 26 HOH HOH . M 5 HOH B 16 907 27 HOH HOH . M 5 HOH B 17 908 28 HOH HOH . M 5 HOH B 18 909 32 HOH HOH . M 5 HOH B 19 910 33 HOH HOH . M 5 HOH B 20 911 34 HOH HOH . M 5 HOH B 21 912 35 HOH HOH . M 5 HOH B 22 913 36 HOH HOH . M 5 HOH B 23 914 37 HOH HOH . M 5 HOH B 24 915 38 HOH HOH . M 5 HOH B 25 916 39 HOH HOH . M 5 HOH B 26 917 40 HOH HOH . M 5 HOH B 27 918 41 HOH HOH . M 5 HOH B 28 919 42 HOH HOH . M 5 HOH B 29 920 45 HOH HOH . M 5 HOH B 30 921 47 HOH HOH . M 5 HOH B 31 922 48 HOH HOH . M 5 HOH B 32 923 49 HOH HOH . M 5 HOH B 33 924 51 HOH HOH . M 5 HOH B 34 925 53 HOH HOH . M 5 HOH B 35 926 54 HOH HOH . M 5 HOH B 36 927 55 HOH HOH . M 5 HOH B 37 928 56 HOH HOH . M 5 HOH B 38 929 58 HOH HOH . M 5 HOH B 39 930 59 HOH HOH . M 5 HOH B 40 931 62 HOH HOH . M 5 HOH B 41 932 63 HOH HOH . M 5 HOH B 42 933 66 HOH HOH . M 5 HOH B 43 934 71 HOH HOH . M 5 HOH B 44 935 72 HOH HOH . M 5 HOH B 45 936 73 HOH HOH . M 5 HOH B 46 937 75 HOH HOH . M 5 HOH B 47 938 78 HOH HOH . M 5 HOH B 48 939 79 HOH HOH . M 5 HOH B 49 940 81 HOH HOH . M 5 HOH B 50 941 82 HOH HOH . M 5 HOH B 51 942 84 HOH HOH . M 5 HOH B 52 943 86 HOH HOH . M 5 HOH B 53 944 88 HOH HOH . M 5 HOH B 54 945 89 HOH HOH . M 5 HOH B 55 946 92 HOH HOH . M 5 HOH B 56 947 93 HOH HOH . M 5 HOH B 57 948 96 HOH HOH . M 5 HOH B 58 949 97 HOH HOH . M 5 HOH B 59 950 99 HOH HOH . M 5 HOH B 60 951 100 HOH HOH . M 5 HOH B 61 952 101 HOH HOH . M 5 HOH B 62 953 103 HOH HOH . M 5 HOH B 63 954 106 HOH HOH . M 5 HOH B 64 955 107 HOH HOH . M 5 HOH B 65 956 111 HOH HOH . M 5 HOH B 66 957 115 HOH HOH . M 5 HOH B 67 958 119 HOH HOH . M 5 HOH B 68 959 120 HOH HOH . M 5 HOH B 69 960 121 HOH HOH . M 5 HOH B 70 961 124 HOH HOH . M 5 HOH B 71 962 127 HOH HOH . M 5 HOH B 72 963 128 HOH HOH . M 5 HOH B 73 964 129 HOH HOH . M 5 HOH B 74 965 130 HOH HOH . M 5 HOH B 75 966 133 HOH HOH . M 5 HOH B 76 967 137 HOH HOH . M 5 HOH B 77 968 138 HOH HOH . M 5 HOH B 78 969 139 HOH HOH . M 5 HOH B 79 970 140 HOH HOH . M 5 HOH B 80 971 141 HOH HOH . M 5 HOH B 81 972 142 HOH HOH . M 5 HOH B 82 973 144 HOH HOH . M 5 HOH B 83 974 145 HOH HOH . M 5 HOH B 84 975 147 HOH HOH . M 5 HOH B 85 976 155 HOH HOH . M 5 HOH B 86 977 156 HOH HOH . M 5 HOH B 87 978 157 HOH HOH . M 5 HOH B 88 979 158 HOH HOH . M 5 HOH B 89 980 159 HOH HOH . M 5 HOH B 90 981 166 HOH HOH . M 5 HOH B 91 982 168 HOH HOH . M 5 HOH B 92 983 170 HOH HOH . M 5 HOH B 93 984 173 HOH HOH . M 5 HOH B 94 985 174 HOH HOH . M 5 HOH B 95 986 175 HOH HOH . M 5 HOH B 96 987 176 HOH HOH . M 5 HOH B 97 988 177 HOH HOH . M 5 HOH B 98 989 179 HOH HOH . M 5 HOH B 99 990 180 HOH HOH . M 5 HOH B 100 991 181 HOH HOH . M 5 HOH B 101 992 183 HOH HOH . M 5 HOH B 102 993 184 HOH HOH . M 5 HOH B 103 994 185 HOH HOH . M 5 HOH B 104 995 186 HOH HOH . M 5 HOH B 105 996 191 HOH HOH . M 5 HOH B 106 997 192 HOH HOH . M 5 HOH B 107 998 193 HOH HOH . M 5 HOH B 108 999 195 HOH HOH . M 5 HOH B 109 1000 196 HOH HOH . M 5 HOH B 110 1001 200 HOH HOH . M 5 HOH B 111 1002 205 HOH HOH . M 5 HOH B 112 1003 207 HOH HOH . M 5 HOH B 113 1004 209 HOH HOH . M 5 HOH B 114 1005 212 HOH HOH . M 5 HOH B 115 1006 213 HOH HOH . M 5 HOH B 116 1007 217 HOH HOH . M 5 HOH B 117 1008 220 HOH HOH . M 5 HOH B 118 1009 221 HOH HOH . M 5 HOH B 119 1010 222 HOH HOH . M 5 HOH B 120 1011 223 HOH HOH . M 5 HOH B 121 1012 224 HOH HOH . M 5 HOH B 122 1013 225 HOH HOH . M 5 HOH B 123 1014 226 HOH HOH . M 5 HOH B 124 1015 230 HOH HOH . M 5 HOH B 125 1016 233 HOH HOH . M 5 HOH B 126 1017 234 HOH HOH . M 5 HOH B 127 1018 235 HOH HOH . M 5 HOH B 128 1019 239 HOH HOH . M 5 HOH B 129 1020 240 HOH HOH . M 5 HOH B 130 1021 241 HOH HOH . M 5 HOH B 131 1022 242 HOH HOH . M 5 HOH B 132 1023 244 HOH HOH . M 5 HOH B 133 1024 245 HOH HOH . M 5 HOH B 134 1025 252 HOH HOH . M 5 HOH B 135 1026 254 HOH HOH . M 5 HOH B 136 1027 255 HOH HOH . M 5 HOH B 137 1028 257 HOH HOH . M 5 HOH B 138 1029 258 HOH HOH . M 5 HOH B 139 1030 259 HOH HOH . M 5 HOH B 140 1031 260 HOH HOH . M 5 HOH B 141 1032 262 HOH HOH . M 5 HOH B 142 1033 264 HOH HOH . M 5 HOH B 143 1034 265 HOH HOH . M 5 HOH B 144 1035 266 HOH HOH . M 5 HOH B 145 1036 268 HOH HOH . M 5 HOH B 146 1037 271 HOH HOH . M 5 HOH B 147 1038 272 HOH HOH . M 5 HOH B 148 1039 274 HOH HOH . M 5 HOH B 149 1040 275 HOH HOH . M 5 HOH B 150 1041 278 HOH HOH . M 5 HOH B 151 1042 279 HOH HOH . M 5 HOH B 152 1043 282 HOH HOH . M 5 HOH B 153 1044 283 HOH HOH . M 5 HOH B 154 1045 289 HOH HOH . M 5 HOH B 155 1046 290 HOH HOH . M 5 HOH B 156 1047 293 HOH HOH . M 5 HOH B 157 1048 294 HOH HOH . M 5 HOH B 158 1049 295 HOH HOH . M 5 HOH B 159 1050 296 HOH HOH . M 5 HOH B 160 1051 297 HOH HOH . M 5 HOH B 161 1052 300 HOH HOH . M 5 HOH B 162 1053 303 HOH HOH . M 5 HOH B 163 1054 304 HOH HOH . M 5 HOH B 164 1055 305 HOH HOH . M 5 HOH B 165 1056 306 HOH HOH . M 5 HOH B 166 1057 310 HOH HOH . M 5 HOH B 167 1058 311 HOH HOH . M 5 HOH B 168 1059 313 HOH HOH . M 5 HOH B 169 1060 314 HOH HOH . M 5 HOH B 170 1061 317 HOH HOH . M 5 HOH B 171 1062 319 HOH HOH . M 5 HOH B 172 1063 322 HOH HOH . M 5 HOH B 173 1064 323 HOH HOH . M 5 HOH B 174 1065 327 HOH HOH . M 5 HOH B 175 1066 328 HOH HOH . M 5 HOH B 176 1067 334 HOH HOH . M 5 HOH B 177 1068 337 HOH HOH . M 5 HOH B 178 1069 338 HOH HOH . M 5 HOH B 179 1070 340 HOH HOH . M 5 HOH B 180 1071 342 HOH HOH . M 5 HOH B 181 1072 343 HOH HOH . M 5 HOH B 182 1073 346 HOH HOH . M 5 HOH B 183 1074 348 HOH HOH . M 5 HOH B 184 1075 350 HOH HOH . M 5 HOH B 185 1076 351 HOH HOH . M 5 HOH B 186 1077 352 HOH HOH . M 5 HOH B 187 1078 353 HOH HOH . M 5 HOH B 188 1079 355 HOH HOH . M 5 HOH B 189 1080 360 HOH HOH . M 5 HOH B 190 1081 363 HOH HOH . M 5 HOH B 191 1082 364 HOH HOH . M 5 HOH B 192 1083 368 HOH HOH . M 5 HOH B 193 1084 370 HOH HOH . M 5 HOH B 194 1085 371 HOH HOH . M 5 HOH B 195 1086 372 HOH HOH . M 5 HOH B 196 1087 373 HOH HOH . M 5 HOH B 197 1088 375 HOH HOH . M 5 HOH B 198 1089 376 HOH HOH . M 5 HOH B 199 1090 377 HOH HOH . M 5 HOH B 200 1091 380 HOH HOH . M 5 HOH B 201 1092 382 HOH HOH . M 5 HOH B 202 1093 384 HOH HOH . M 5 HOH B 203 1094 387 HOH HOH . M 5 HOH B 204 1095 390 HOH HOH . M 5 HOH B 205 1096 392 HOH HOH . M 5 HOH B 206 1097 397 HOH HOH . M 5 HOH B 207 1098 399 HOH HOH . M 5 HOH B 208 1099 406 HOH HOH . M 5 HOH B 209 1100 407 HOH HOH . M 5 HOH B 210 1101 409 HOH HOH . M 5 HOH B 211 1102 410 HOH HOH . M 5 HOH B 212 1103 415 HOH HOH . M 5 HOH B 213 1104 418 HOH HOH . M 5 HOH B 214 1105 419 HOH HOH . M 5 HOH B 215 1106 421 HOH HOH . M 5 HOH B 216 1107 422 HOH HOH . M 5 HOH B 217 1108 423 HOH HOH . M 5 HOH B 218 1109 428 HOH HOH . M 5 HOH B 219 1110 429 HOH HOH . M 5 HOH B 220 1111 430 HOH HOH . M 5 HOH B 221 1112 433 HOH HOH . M 5 HOH B 222 1113 438 HOH HOH . M 5 HOH B 223 1114 440 HOH HOH . M 5 HOH B 224 1115 442 HOH HOH . M 5 HOH B 225 1116 443 HOH HOH . M 5 HOH B 226 1117 444 HOH HOH . M 5 HOH B 227 1118 446 HOH HOH . M 5 HOH B 228 1119 447 HOH HOH . M 5 HOH B 229 1120 448 HOH HOH . M 5 HOH B 230 1121 449 HOH HOH . M 5 HOH B 231 1122 450 HOH HOH . M 5 HOH B 232 1123 451 HOH HOH . M 5 HOH B 233 1124 453 HOH HOH . M 5 HOH B 234 1125 454 HOH HOH . M 5 HOH B 235 1126 455 HOH HOH . M 5 HOH B 236 1127 456 HOH HOH . M 5 HOH B 237 1128 457 HOH HOH . M 5 HOH B 238 1129 458 HOH HOH . M 5 HOH B 239 1130 470 HOH HOH . M 5 HOH B 240 1131 471 HOH HOH . M 5 HOH B 241 1132 472 HOH HOH . M 5 HOH B 242 1133 473 HOH HOH . M 5 HOH B 243 1134 475 HOH HOH . M 5 HOH B 244 1135 476 HOH HOH . M 5 HOH B 245 1136 478 HOH HOH . M 5 HOH B 246 1137 479 HOH HOH . M 5 HOH B 247 1138 482 HOH HOH . M 5 HOH B 248 1139 483 HOH HOH . M 5 HOH B 249 1140 484 HOH HOH . M 5 HOH B 250 1141 485 HOH HOH . M 5 HOH B 251 1142 486 HOH HOH . M 5 HOH B 252 1143 488 HOH HOH . M 5 HOH B 253 1144 489 HOH HOH . M 5 HOH B 254 1145 490 HOH HOH . M 5 HOH B 255 1146 491 HOH HOH . M 5 HOH B 256 1147 492 HOH HOH . M 5 HOH B 257 1148 498 HOH HOH . M 5 HOH B 258 1149 500 HOH HOH . M 5 HOH B 259 1150 501 HOH HOH . M 5 HOH B 260 1151 502 HOH HOH . M 5 HOH B 261 1152 507 HOH HOH . M 5 HOH B 262 1153 508 HOH HOH . M 5 HOH B 263 1154 510 HOH HOH . M 5 HOH B 264 1155 513 HOH HOH . M 5 HOH B 265 1156 514 HOH HOH . M 5 HOH B 266 1157 515 HOH HOH . M 5 HOH B 267 1158 517 HOH HOH . M 5 HOH B 268 1159 518 HOH HOH . M 5 HOH B 269 1160 519 HOH HOH . M 5 HOH B 270 1161 521 HOH HOH . M 5 HOH B 271 1162 522 HOH HOH . M 5 HOH B 272 1163 524 HOH HOH . M 5 HOH B 273 1164 526 HOH HOH . M 5 HOH B 274 1165 527 HOH HOH . M 5 HOH B 275 1166 530 HOH HOH . M 5 HOH B 276 1167 531 HOH HOH . M 5 HOH B 277 1168 532 HOH HOH . M 5 HOH B 278 1169 534 HOH HOH . M 5 HOH B 279 1170 535 HOH HOH . M 5 HOH B 280 1171 536 HOH HOH . M 5 HOH B 281 1172 538 HOH HOH . M 5 HOH B 282 1173 539 HOH HOH . M 5 HOH B 283 1174 540 HOH HOH . M 5 HOH B 284 1175 545 HOH HOH . M 5 HOH B 285 1176 547 HOH HOH . M 5 HOH B 286 1177 553 HOH HOH . M 5 HOH B 287 1178 555 HOH HOH . M 5 HOH B 288 1179 557 HOH HOH . M 5 HOH B 289 1180 558 HOH HOH . M 5 HOH B 290 1181 559 HOH HOH . M 5 HOH B 291 1182 564 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2B TDK . . . F 4 22.312 -32.052 19.153 1 2 ? O2B TDK 887 A 1 HETATM 2 P PB TDK . . . F 4 22.342 -31.708 17.722 1 3.98 ? PB TDK 887 A 1 HETATM 3 O O3B TDK . . . F 4 23.384 -30.792 17.241 1 2 ? O3B TDK 887 A 1 HETATM 4 O O1B TDK . . . F 4 20.914 -31.118 17.3 1 2.81 ? O1B TDK 887 A 1 HETATM 5 O O3A TDK . . . F 4 22.441 -33.092 16.894 1 2.86 ? O3A TDK 887 A 1 HETATM 6 P PA TDK . . . F 4 21.529 -33.449 15.605 1 2 ? PA TDK 887 A 1 HETATM 7 O O1A TDK . . . F 4 20.138 -32.985 15.81 1 3.31 ? O1A TDK 887 A 1 HETATM 8 O O2A TDK . . . F 4 21.758 -34.874 15.299 1 2.15 ? O2A TDK 887 A 1 HETATM 9 O O7 TDK . . . F 4 22.208 -32.566 14.447 1 3.56 ? O7 TDK 887 A 1 HETATM 10 C C7 TDK . . . F 4 23.48 -32.961 13.932 1 5.29 ? C7 TDK 887 A 1 HETATM 11 C C6 TDK . . . F 4 23.808 -32.177 12.735 1 6.62 ? C6 TDK 887 A 1 HETATM 12 C C5 TDK . . . F 4 25.159 -32.442 12.181 1 6.2 ? C5 TDK 887 A 1 HETATM 13 S S1 TDK . . . F 4 26.539 -32.244 13.189 1 6.4 ? S1 TDK 887 A 1 HETATM 14 C C4 TDK . . . F 4 25.555 -32.794 10.929 1 6.22 ? C4 TDK 887 A 1 HETATM 15 C CM4 TDK . . . F 4 24.672 -32.99 9.75 1 3.67 ? CM4 TDK 887 A 1 HETATM 16 N N3 TDK . . . F 4 26.92 -32.896 10.813 1 5.56 ? N3 TDK 887 A 1 HETATM 17 C C2 TDK . . . F 4 27.603 -32.595 11.94 1 8.26 ? C2 TDK 887 A 1 HETATM 18 C CMA TDK . . . F 4 29.059 -32.219 12.049 1 10.88 ? CMA TDK 887 A 1 HETATM 19 O OM1 TDK . . . F 4 29.861 -33.094 11.229 1 10.93 ? OM1 TDK 887 A 1 HETATM 20 C CMB TDK . . . F 4 29.505 -32.249 13.487 1 9.05 ? CMB TDK 887 A 1 HETATM 21 P PC TDK . . . F 4 29.123 -30.49 11.4 1 12.87 ? PC TDK 887 A 1 HETATM 22 O OM3 TDK . . . F 4 28.645 -30.474 10.008 1 13.7 ? OM3 TDK 887 A 1 HETATM 23 O OM2 TDK . . . F 4 30.67 -30.212 11.451 1 13.78 ? OM2 TDK 887 A 1 HETATM 24 C CMC TDK . . . F 4 31.431 -29.83 10.385 1 13.73 ? CMC TDK 887 A 1 HETATM 25 O OM4 TDK . . . F 4 28.436 -29.598 12.347 1 14.88 ? OM4 TDK 887 A 1 HETATM 26 C C7' TDK . . . F 4 27.572 -33.33 9.555 1 4.05 ? C7' TDK 887 A 1 HETATM 27 C C5' TDK . . . F 4 27.463 -34.827 9.362 1 3.43 ? C5' TDK 887 A 1 HETATM 28 C C6' TDK . . . F 4 26.742 -35.33 8.384 1 2.6 ? C6' TDK 887 A 1 HETATM 29 N N1' TDK . . . F 4 26.692 -36.635 8.151 1 2.85 ? N1' TDK 887 A 1 HETATM 30 C C2' TDK . . . F 4 27.387 -37.489 8.913 1 2 ? C2' TDK 887 A 1 HETATM 31 C CM2 TDK . . . F 4 27.316 -38.912 8.601 1 2 ? CM2 TDK 887 A 1 HETATM 32 N N3' TDK . . . F 4 28.135 -37.095 9.919 1 3.83 ? N3' TDK 887 A 1 HETATM 33 C C4' TDK . . . F 4 28.205 -35.769 10.181 1 3.57 ? C4' TDK 887 A 1 HETATM 34 N N4' TDK . . . F 4 28.948 -35.411 11.177 1 2 ? N4' TDK 887 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 109 _model_server_stats.create_model_time_ms 150 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 34 #