data_2G2F # _model_server_result.job_id ETRFA2QDI_b5soOc1XNykA _model_server_result.datetime_utc '2024-11-22 04:12:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g2f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 2G2F # _exptl.entry_id 2G2F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 580.298 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'THIOPHOSPHORIC ACID O-((ADENOSYL-PHOSPHO)PHOSPHO)-S-ACETAMIDYL-DIESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G2F _cell.length_a 105.669 _cell.length_b 133.322 _cell.length_c 56.576 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G2F _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,H 1 1 B,D,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id CZ _struct_conn.ptnr1_label_comp_id PHE _struct_conn.ptnr1_label_seq_id 4 _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id PHE _struct_conn.ptnr1_auth_seq_id 107 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id NS _struct_conn.ptnr2_label_comp_id 112 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id 112 _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.465 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H19 N6 O13 P3 S' _chem_comp.formula_weight 580.298 _chem_comp.id 112 _chem_comp.mon_nstd_flag . _chem_comp.name 'THIOPHOSPHORIC ACID O-((ADENOSYL-PHOSPHO)PHOSPHO)-S-ACETAMIDYL-DIESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NS C2S 112 sing 1 n n NS HNS1 112 sing 2 n n NS HNS2 112 sing 3 n n C2S O2S 112 doub 4 n n C2S C1S 112 sing 5 n n C1S S1G 112 sing 6 n n C1S H1S1 112 sing 7 n n C1S H1S2 112 sing 8 n n PG S1G 112 sing 9 n n PG O2G 112 sing 10 n n PG O3G 112 doub 11 n n PG O3B 112 sing 12 n n O2G HOG2 112 sing 13 n n PB O1B 112 doub 14 n n PB O2B 112 sing 15 n n PB O3B 112 sing 16 n n PB O3A 112 sing 17 n n O2B HOB2 112 sing 18 n n PA O1A 112 doub 19 n n PA O2A 112 sing 20 n n PA O3A 112 sing 21 n n PA O5' 112 sing 22 n n O2A HOA2 112 sing 23 n n O5' C5' 112 sing 24 n n C5' C4' 112 sing 25 n n C5' "H5'1" 112 sing 26 n n C5' "H5'2" 112 sing 27 n n C4' O4' 112 sing 28 n n C4' C3' 112 sing 29 n n C4' H4' 112 sing 30 n n O4' C1' 112 sing 31 n n C3' O3' 112 sing 32 n n C3' C2' 112 sing 33 n n C3' H3' 112 sing 34 n n O3' HO3' 112 sing 35 n n C2' O2' 112 sing 36 n n C2' C1' 112 sing 37 n n C2' H2' 112 sing 38 n n O2' HO2' 112 sing 39 n n C1' N9 112 sing 40 n n C1' H1' 112 sing 41 n n N9 C8 112 sing 42 n y N9 C4 112 sing 43 n y C8 N7 112 doub 44 n y C8 H8 112 sing 45 n n N7 C5 112 sing 46 n y C5 C6 112 sing 47 n y C5 C4 112 doub 48 n y C6 N6 112 sing 49 n n C6 N1 112 doub 50 n y N6 HN61 112 sing 51 n n N6 HN62 112 sing 52 n n N1 C2 112 sing 53 n y C2 N3 112 doub 54 n y C2 H2 112 sing 55 n n N3 C4 112 sing 56 n y # _atom_sites.entry_id 2G2F _atom_sites.fract_transf_matrix[1][1] 0.009464 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017675 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 AGS B 1 601 201 AGS ATG . E 4 112 C 1 201 101 112 112 . F 5 HOH A 1 601 3 HOH HOH . F 5 HOH A 2 602 5 HOH HOH . F 5 HOH A 3 603 6 HOH HOH . F 5 HOH A 4 604 7 HOH HOH . F 5 HOH A 5 605 8 HOH HOH . F 5 HOH A 6 606 9 HOH HOH . F 5 HOH A 7 607 10 HOH HOH . F 5 HOH A 8 608 11 HOH HOH . F 5 HOH A 9 609 12 HOH HOH . F 5 HOH A 10 610 13 HOH HOH . F 5 HOH A 11 611 14 HOH HOH . F 5 HOH A 12 612 15 HOH HOH . F 5 HOH A 13 613 16 HOH HOH . F 5 HOH A 14 614 18 HOH HOH . F 5 HOH A 15 615 19 HOH HOH . F 5 HOH A 16 616 20 HOH HOH . F 5 HOH A 17 617 21 HOH HOH . F 5 HOH A 18 618 26 HOH HOH . F 5 HOH A 19 619 28 HOH HOH . F 5 HOH A 20 620 29 HOH HOH . F 5 HOH A 21 621 30 HOH HOH . F 5 HOH A 22 622 33 HOH HOH . F 5 HOH A 23 623 34 HOH HOH . F 5 HOH A 24 624 35 HOH HOH . F 5 HOH A 25 625 36 HOH HOH . F 5 HOH A 26 626 38 HOH HOH . F 5 HOH A 27 627 40 HOH HOH . F 5 HOH A 28 628 45 HOH HOH . F 5 HOH A 29 629 47 HOH HOH . F 5 HOH A 30 630 48 HOH HOH . F 5 HOH A 31 631 50 HOH HOH . F 5 HOH A 32 632 51 HOH HOH . F 5 HOH A 33 633 53 HOH HOH . F 5 HOH A 34 634 56 HOH HOH . F 5 HOH A 35 635 63 HOH HOH . F 5 HOH A 36 636 66 HOH HOH . F 5 HOH A 37 637 68 HOH HOH . F 5 HOH A 38 638 72 HOH HOH . F 5 HOH A 39 639 74 HOH HOH . F 5 HOH A 40 640 75 HOH HOH . F 5 HOH A 41 641 78 HOH HOH . F 5 HOH A 42 642 83 HOH HOH . F 5 HOH A 43 643 91 HOH HOH . F 5 HOH A 44 644 96 HOH HOH . F 5 HOH A 45 645 97 HOH HOH . F 5 HOH A 46 646 102 HOH HOH . F 5 HOH A 47 647 105 HOH HOH . F 5 HOH A 48 648 107 HOH HOH . F 5 HOH A 49 649 110 HOH HOH . F 5 HOH A 50 650 114 HOH HOH . F 5 HOH A 51 651 123 HOH HOH . F 5 HOH A 52 652 125 HOH HOH . F 5 HOH A 53 653 126 HOH HOH . G 5 HOH B 1 701 1 HOH HOH . G 5 HOH B 2 702 2 HOH HOH . G 5 HOH B 3 703 17 HOH HOH . G 5 HOH B 4 704 22 HOH HOH . G 5 HOH B 5 705 23 HOH HOH . G 5 HOH B 6 706 24 HOH HOH . G 5 HOH B 7 707 27 HOH HOH . G 5 HOH B 8 708 31 HOH HOH . G 5 HOH B 9 709 32 HOH HOH . G 5 HOH B 10 710 37 HOH HOH . G 5 HOH B 11 711 39 HOH HOH . G 5 HOH B 12 712 41 HOH HOH . G 5 HOH B 13 713 42 HOH HOH . G 5 HOH B 14 714 43 HOH HOH . G 5 HOH B 15 715 44 HOH HOH . G 5 HOH B 16 716 46 HOH HOH . G 5 HOH B 17 717 52 HOH HOH . G 5 HOH B 18 718 57 HOH HOH . G 5 HOH B 19 719 58 HOH HOH . G 5 HOH B 20 720 59 HOH HOH . G 5 HOH B 21 721 67 HOH HOH . G 5 HOH B 22 722 71 HOH HOH . G 5 HOH B 23 723 80 HOH HOH . G 5 HOH B 24 724 84 HOH HOH . G 5 HOH B 25 725 90 HOH HOH . G 5 HOH B 26 726 99 HOH HOH . G 5 HOH B 27 727 103 HOH HOH . G 5 HOH B 28 728 116 HOH HOH . G 5 HOH B 29 729 120 HOH HOH . G 5 HOH B 30 730 121 HOH HOH . H 5 HOH C 1 301 4 HOH HOH . H 5 HOH C 2 302 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NS 112 . . . E 4 13.578 20.531 15.704 1 65.44 ? NS 112 201 C 1 HETATM 2 C C2S 112 . . . E 4 14.026 20.425 14.44 1 71.26 ? C2S 112 201 C 1 HETATM 3 O O2S 112 . . . E 4 14.345 19.28 14.072 1 69.8 ? O2S 112 201 C 1 HETATM 4 C C1S 112 . . . E 4 14.163 21.635 13.464 1 74 ? C1S 112 201 C 1 HETATM 5 P PG 112 . . . E 4 12.387 21.379 11.33 1 78.42 ? PG 112 201 C 1 HETATM 6 S S1G 112 . . . E 4 14.17 21.309 11.81 1 77.94 ? S1G 112 201 C 1 HETATM 7 O O2G 112 . . . E 4 12.06 22.326 10.248 1 78.67 ? O2G 112 201 C 1 HETATM 8 O O3G 112 . . . E 4 11.635 21.675 12.57 1 76.15 ? O3G 112 201 C 1 HETATM 9 P PB 112 . . . E 4 12.345 19.065 9.602 1 74.25 ? PB 112 201 C 1 HETATM 10 O O1B 112 . . . E 4 12.731 17.744 10.184 1 73.32 ? O1B 112 201 C 1 HETATM 11 O O2B 112 . . . E 4 11.312 18.995 8.545 1 74.73 ? O2B 112 201 C 1 HETATM 12 O O3B 112 . . . E 4 11.778 20.01 10.736 1 76.17 ? O3B 112 201 C 1 HETATM 13 P PA 112 . . . E 4 14.68 18.951 7.521 1 66.54 ? PA 112 201 C 1 HETATM 14 O O1A 112 . . . E 4 14.71 19.911 6.413 1 68.43 ? O1A 112 201 C 1 HETATM 15 O O2A 112 . . . E 4 15.936 18.483 8.165 1 64.43 ? O2A 112 201 C 1 HETATM 16 O O3A 112 . . . E 4 13.697 19.407 8.874 1 70.26 ? O3A 112 201 C 1 HETATM 17 O O5' 112 . . . E 4 13.651 17.815 7.023 1 60.55 ? O5' 112 201 C 1 HETATM 18 C C5' 112 . . . E 4 12.615 18.208 6.198 1 53.4 ? C5' 112 201 C 1 HETATM 19 C C4' 112 . . . E 4 11.752 17.022 5.806 1 50.13 ? C4' 112 201 C 1 HETATM 20 O O4' 112 . . . E 4 12.327 16.295 4.767 1 47.46 ? O4' 112 201 C 1 HETATM 21 C C3' 112 . . . E 4 11.522 16.107 6.986 1 49.44 ? C3' 112 201 C 1 HETATM 22 O O3' 112 . . . E 4 10.127 15.963 7.218 1 51.13 ? O3' 112 201 C 1 HETATM 23 C C2' 112 . . . E 4 12.183 14.792 6.638 1 46.9 ? C2' 112 201 C 1 HETATM 24 O O2' 112 . . . E 4 11.393 13.662 7.026 1 50.41 ? O2' 112 201 C 1 HETATM 25 C C1' 112 . . . E 4 12.539 14.969 5.084 1 44.81 ? C1' 112 201 C 1 HETATM 26 N N9 112 . . . E 4 13.956 14.634 4.736 1 39.77 ? N9 112 201 C 1 HETATM 27 C C8 112 . . . E 4 15.18 15.172 5.182 1 37.28 ? C8 112 201 C 1 HETATM 28 N N7 112 . . . E 4 16.297 14.665 4.722 1 34.63 ? N7 112 201 C 1 HETATM 29 C C5 112 . . . E 4 15.806 13.702 3.894 1 34.45 ? C5 112 201 C 1 HETATM 30 C C6 112 . . . E 4 16.43 12.723 3.053 1 34.77 ? C6 112 201 C 1 HETATM 31 N N6 112 . . . E 4 17.887 12.654 2.991 1 30.69 ? N6 112 201 C 1 HETATM 32 N N1 112 . . . E 4 15.631 11.841 2.298 1 34.6 ? N1 112 201 C 1 HETATM 33 C C2 112 . . . E 4 14.245 11.903 2.359 1 34.63 ? C2 112 201 C 1 HETATM 34 N N3 112 . . . E 4 13.528 12.786 3.124 1 34.32 ? N3 112 201 C 1 HETATM 35 C C4 112 . . . E 4 14.356 13.659 3.876 1 35.67 ? C4 112 201 C 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 35 #