data_2G2I # _model_server_result.job_id 9WIgRi12wk1-M8_2P07vzw _model_server_result.datetime_utc '2024-11-22 08:07:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g2i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":820}' # _entry.id 2G2I # _exptl.entry_id 2G2I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G2I _cell.length_a 88.457 _cell.length_b 88.457 _cell.length_c 235.625 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G2I _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA octameric 8 software_defined_assembly 3 PISA tetrameric 4 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 A,B,C,D,E,F 3 1,2 A,B,C,D,E,F 4 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2G2I _atom_sites.fract_transf_matrix[1][1] 0.011305 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011305 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ADP A 1 820 820 ADP ADP . F 3 ADP B 1 821 821 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . E 3 -10.821 -31.285 -21.403 1 95.66 ? PB ADP 820 A 1 HETATM 2 O O1B ADP . . . E 3 -10.831 -31.354 -19.909 1 89.58 ? O1B ADP 820 A 1 HETATM 3 O O2B ADP . . . E 3 -10.107 -32.624 -21.974 1 91.14 ? O2B ADP 820 A 1 HETATM 4 O O3B ADP . . . E 3 -9.993 -29.991 -21.889 1 89 ? O3B ADP 820 A 1 HETATM 5 P PA ADP . . . E 3 -13.182 -29.885 -21.499 1 94.17 ? PA ADP 820 A 1 HETATM 6 O O1A ADP . . . E 3 -13.508 -29.056 -22.689 1 92.14 ? O1A ADP 820 A 1 HETATM 7 O O2A ADP . . . E 3 -14.563 -30.321 -20.752 1 91.4 ? O2A ADP 820 A 1 HETATM 8 O O3A ADP . . . E 3 -12.351 -31.213 -21.997 1 90.51 ? O3A ADP 820 A 1 HETATM 9 O O5' ADP . . . E 3 -12.271 -28.993 -20.511 1 87.47 ? O5' ADP 820 A 1 HETATM 10 C C5' ADP . . . E 3 -13.126 -28.213 -19.646 1 79.61 ? C5' ADP 820 A 1 HETATM 11 C C4' ADP . . . E 3 -12.291 -27.26 -18.75 1 75.92 ? C4' ADP 820 A 1 HETATM 12 O O4' ADP . . . E 3 -13.13 -26.779 -17.688 1 77.3 ? O4' ADP 820 A 1 HETATM 13 C C3' ADP . . . E 3 -11.091 -27.967 -18.075 1 75.93 ? C3' ADP 820 A 1 HETATM 14 O O3' ADP . . . E 3 -9.865 -27.594 -18.705 1 74.52 ? O3' ADP 820 A 1 HETATM 15 C C2' ADP . . . E 3 -11.119 -27.534 -16.615 1 75.59 ? C2' ADP 820 A 1 HETATM 16 O O2' ADP . . . E 3 -9.893 -26.88 -16.252 1 81.5 ? O2' ADP 820 A 1 HETATM 17 C C1' ADP . . . E 3 -12.313 -26.587 -16.514 1 75.49 ? C1' ADP 820 A 1 HETATM 18 N N9 ADP . . . E 3 -13.098 -26.856 -15.307 1 75.83 ? N9 ADP 820 A 1 HETATM 19 C C8 ADP . . . E 3 -14.096 -27.781 -15.159 1 74.96 ? C8 ADP 820 A 1 HETATM 20 N N7 ADP . . . E 3 -14.576 -27.736 -13.953 1 76.49 ? N7 ADP 820 A 1 HETATM 21 C C5 ADP . . . E 3 -13.922 -26.788 -13.251 1 75.74 ? C5 ADP 820 A 1 HETATM 22 C C6 ADP . . . E 3 -13.999 -26.288 -11.925 1 76.23 ? C6 ADP 820 A 1 HETATM 23 N N6 ADP . . . E 3 -14.921 -26.819 -11.028 1 75.33 ? N6 ADP 820 A 1 HETATM 24 N N1 ADP . . . E 3 -13.154 -25.294 -11.555 1 76.75 ? N1 ADP 820 A 1 HETATM 25 C C2 ADP . . . E 3 -12.259 -24.776 -12.408 1 77.38 ? C2 ADP 820 A 1 HETATM 26 N N3 ADP . . . E 3 -12.16 -25.22 -13.659 1 76.32 ? N3 ADP 820 A 1 HETATM 27 C C4 ADP . . . E 3 -12.963 -26.208 -14.116 1 75.86 ? C4 ADP 820 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #