data_2G37 # _model_server_result.job_id awEV1CpGbG0NthTSgmmhkA _model_server_result.datetime_utc '2024-12-01 05:44:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g37 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":374}' # _entry.id 2G37 # _exptl.entry_id 2G37 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G37 _cell.length_a 82.067 _cell.length_b 89.59 _cell.length_c 94.316 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G37 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 315 n n C1 H11 MPD sing 316 n n C1 H12 MPD sing 317 n n C1 H13 MPD sing 318 n n C2 O2 MPD sing 319 n n C2 CM MPD sing 320 n n C2 C3 MPD sing 321 n n O2 HO2 MPD sing 322 n n CM HM1 MPD sing 323 n n CM HM2 MPD sing 324 n n CM HM3 MPD sing 325 n n C3 C4 MPD sing 326 n n C3 H31 MPD sing 327 n n C3 H32 MPD sing 328 n n C4 O4 MPD sing 329 n n C4 C5 MPD sing 330 n n C4 H4 MPD sing 331 n n O4 HO4 MPD sing 332 n n C5 H51 MPD sing 333 n n C5 H52 MPD sing 334 n n C5 H53 MPD sing 335 n n # _atom_sites.entry_id 2G37 _atom_sites.fract_transf_matrix[1][1] 0.01218 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 2001 2001 FAD FAD . D 3 MPD A 1 373 373 MPD MPD . E 3 MPD A 1 374 374 MPD MPD . F 2 FAD B 1 2002 2002 FAD FAD . G 3 MPD B 1 371 371 MPD MPD . H 3 MPD B 1 372 372 MPD MPD . I 4 HOH A 1 2002 1 HOH HOH . I 4 HOH A 2 2003 2 HOH HOH . I 4 HOH A 3 2004 3 HOH HOH . I 4 HOH A 4 2005 5 HOH HOH . I 4 HOH A 5 2006 11 HOH HOH . I 4 HOH A 6 2007 12 HOH HOH . I 4 HOH A 7 2008 13 HOH HOH . I 4 HOH A 8 2009 14 HOH HOH . I 4 HOH A 9 2010 16 HOH HOH . I 4 HOH A 10 2011 17 HOH HOH . I 4 HOH A 11 2012 19 HOH HOH . I 4 HOH A 12 2013 21 HOH HOH . I 4 HOH A 13 2014 23 HOH HOH . I 4 HOH A 14 2015 24 HOH HOH . I 4 HOH A 15 2016 25 HOH HOH . I 4 HOH A 16 2017 26 HOH HOH . I 4 HOH A 17 2018 27 HOH HOH . I 4 HOH A 18 2019 28 HOH HOH . I 4 HOH A 19 2020 30 HOH HOH . I 4 HOH A 20 2021 31 HOH HOH . I 4 HOH A 21 2022 33 HOH HOH . I 4 HOH A 22 2023 34 HOH HOH . I 4 HOH A 23 2024 35 HOH HOH . I 4 HOH A 24 2025 38 HOH HOH . I 4 HOH A 25 2026 40 HOH HOH . I 4 HOH A 26 2027 46 HOH HOH . I 4 HOH A 27 2028 47 HOH HOH . I 4 HOH A 28 2029 48 HOH HOH . I 4 HOH A 29 2030 49 HOH HOH . I 4 HOH A 30 2031 50 HOH HOH . I 4 HOH A 31 2032 52 HOH HOH . I 4 HOH A 32 2033 53 HOH HOH . I 4 HOH A 33 2034 55 HOH HOH . I 4 HOH A 34 2035 58 HOH HOH . I 4 HOH A 35 2036 60 HOH HOH . I 4 HOH A 36 2037 63 HOH HOH . I 4 HOH A 37 2038 67 HOH HOH . I 4 HOH A 38 2039 68 HOH HOH . I 4 HOH A 39 2040 69 HOH HOH . I 4 HOH A 40 2041 72 HOH HOH . I 4 HOH A 41 2042 78 HOH HOH . I 4 HOH A 42 2043 79 HOH HOH . I 4 HOH A 43 2044 82 HOH HOH . I 4 HOH A 44 2045 88 HOH HOH . I 4 HOH A 45 2046 91 HOH HOH . I 4 HOH A 46 2047 92 HOH HOH . I 4 HOH A 47 2048 95 HOH HOH . I 4 HOH A 48 2049 96 HOH HOH . I 4 HOH A 49 2050 98 HOH HOH . I 4 HOH A 50 2051 99 HOH HOH . I 4 HOH A 51 2052 100 HOH HOH . I 4 HOH A 52 2053 101 HOH HOH . I 4 HOH A 53 2054 104 HOH HOH . I 4 HOH A 54 2055 105 HOH HOH . I 4 HOH A 55 2056 107 HOH HOH . I 4 HOH A 56 2057 108 HOH HOH . I 4 HOH A 57 2058 109 HOH HOH . I 4 HOH A 58 2059 111 HOH HOH . I 4 HOH A 59 2060 112 HOH HOH . I 4 HOH A 60 2061 113 HOH HOH . I 4 HOH A 61 2062 114 HOH HOH . I 4 HOH A 62 2063 115 HOH HOH . I 4 HOH A 63 2064 116 HOH HOH . I 4 HOH A 64 2065 117 HOH HOH . I 4 HOH A 65 2066 118 HOH HOH . I 4 HOH A 66 2067 122 HOH HOH . I 4 HOH A 67 2068 123 HOH HOH . I 4 HOH A 68 2069 126 HOH HOH . I 4 HOH A 69 2070 128 HOH HOH . I 4 HOH A 70 2071 130 HOH HOH . I 4 HOH A 71 2072 131 HOH HOH . I 4 HOH A 72 2073 132 HOH HOH . I 4 HOH A 73 2074 133 HOH HOH . I 4 HOH A 74 2075 136 HOH HOH . I 4 HOH A 75 2076 137 HOH HOH . I 4 HOH A 76 2077 150 HOH HOH . I 4 HOH A 77 2078 151 HOH HOH . I 4 HOH A 78 2079 155 HOH HOH . I 4 HOH A 79 2080 156 HOH HOH . I 4 HOH A 80 2081 158 HOH HOH . I 4 HOH A 81 2082 159 HOH HOH . I 4 HOH A 82 2083 160 HOH HOH . I 4 HOH A 83 2084 163 HOH HOH . I 4 HOH A 84 2085 164 HOH HOH . I 4 HOH A 85 2086 166 HOH HOH . I 4 HOH A 86 2087 167 HOH HOH . I 4 HOH A 87 2088 170 HOH HOH . I 4 HOH A 88 2089 171 HOH HOH . I 4 HOH A 89 2090 172 HOH HOH . I 4 HOH A 90 2091 173 HOH HOH . I 4 HOH A 91 2092 174 HOH HOH . I 4 HOH A 92 2093 175 HOH HOH . I 4 HOH A 93 2094 177 HOH HOH . I 4 HOH A 94 2095 182 HOH HOH . I 4 HOH A 95 2096 183 HOH HOH . I 4 HOH A 96 2097 184 HOH HOH . I 4 HOH A 97 2098 187 HOH HOH . I 4 HOH A 98 2099 194 HOH HOH . I 4 HOH A 99 2100 195 HOH HOH . I 4 HOH A 100 2101 197 HOH HOH . I 4 HOH A 101 2102 198 HOH HOH . I 4 HOH A 102 2103 199 HOH HOH . I 4 HOH A 103 2104 200 HOH HOH . I 4 HOH A 104 2105 202 HOH HOH . I 4 HOH A 105 2106 215 HOH HOH . I 4 HOH A 106 2107 216 HOH HOH . I 4 HOH A 107 2108 217 HOH HOH . I 4 HOH A 108 2109 218 HOH HOH . I 4 HOH A 109 2110 221 HOH HOH . I 4 HOH A 110 2111 225 HOH HOH . I 4 HOH A 111 2112 226 HOH HOH . I 4 HOH A 112 2113 227 HOH HOH . I 4 HOH A 113 2114 228 HOH HOH . I 4 HOH A 114 2115 229 HOH HOH . I 4 HOH A 115 2116 236 HOH HOH . I 4 HOH A 116 2117 237 HOH HOH . I 4 HOH A 117 2118 238 HOH HOH . I 4 HOH A 118 2119 239 HOH HOH . I 4 HOH A 119 2120 240 HOH HOH . I 4 HOH A 120 2121 243 HOH HOH . I 4 HOH A 121 2122 244 HOH HOH . I 4 HOH A 122 2123 245 HOH HOH . I 4 HOH A 123 2124 246 HOH HOH . I 4 HOH A 124 2125 247 HOH HOH . I 4 HOH A 125 2126 252 HOH HOH . I 4 HOH A 126 2127 254 HOH HOH . I 4 HOH A 127 2128 255 HOH HOH . I 4 HOH A 128 2129 256 HOH HOH . I 4 HOH A 129 2130 257 HOH HOH . I 4 HOH A 130 2131 259 HOH HOH . I 4 HOH A 131 2132 260 HOH HOH . I 4 HOH A 132 2133 261 HOH HOH . I 4 HOH A 133 2134 265 HOH HOH . I 4 HOH A 134 2135 266 HOH HOH . I 4 HOH A 135 2136 268 HOH HOH . I 4 HOH A 136 2137 270 HOH HOH . I 4 HOH A 137 2138 272 HOH HOH . J 4 HOH B 1 2003 4 HOH HOH . J 4 HOH B 2 2004 6 HOH HOH . J 4 HOH B 3 2005 7 HOH HOH . J 4 HOH B 4 2006 8 HOH HOH . J 4 HOH B 5 2007 9 HOH HOH . J 4 HOH B 6 2008 10 HOH HOH . J 4 HOH B 7 2009 15 HOH HOH . J 4 HOH B 8 2010 18 HOH HOH . J 4 HOH B 9 2011 20 HOH HOH . J 4 HOH B 10 2012 22 HOH HOH . J 4 HOH B 11 2013 29 HOH HOH . J 4 HOH B 12 2014 32 HOH HOH . J 4 HOH B 13 2015 36 HOH HOH . J 4 HOH B 14 2016 37 HOH HOH . J 4 HOH B 15 2017 39 HOH HOH . J 4 HOH B 16 2018 41 HOH HOH . J 4 HOH B 17 2019 42 HOH HOH . J 4 HOH B 18 2020 43 HOH HOH . J 4 HOH B 19 2021 44 HOH HOH . J 4 HOH B 20 2022 45 HOH HOH . J 4 HOH B 21 2023 51 HOH HOH . J 4 HOH B 22 2024 54 HOH HOH . J 4 HOH B 23 2025 56 HOH HOH . J 4 HOH B 24 2026 57 HOH HOH . J 4 HOH B 25 2027 59 HOH HOH . J 4 HOH B 26 2028 62 HOH HOH . J 4 HOH B 27 2029 65 HOH HOH . J 4 HOH B 28 2030 66 HOH HOH . J 4 HOH B 29 2031 70 HOH HOH . J 4 HOH B 30 2032 71 HOH HOH . J 4 HOH B 31 2033 73 HOH HOH . J 4 HOH B 32 2034 74 HOH HOH . J 4 HOH B 33 2035 75 HOH HOH . J 4 HOH B 34 2036 77 HOH HOH . J 4 HOH B 35 2037 80 HOH HOH . J 4 HOH B 36 2038 84 HOH HOH . J 4 HOH B 37 2039 86 HOH HOH . J 4 HOH B 38 2040 87 HOH HOH . J 4 HOH B 39 2041 89 HOH HOH . J 4 HOH B 40 2042 90 HOH HOH . J 4 HOH B 41 2043 93 HOH HOH . J 4 HOH B 42 2044 94 HOH HOH . J 4 HOH B 43 2045 97 HOH HOH . J 4 HOH B 44 2046 102 HOH HOH . J 4 HOH B 45 2047 103 HOH HOH . J 4 HOH B 46 2048 106 HOH HOH . J 4 HOH B 47 2049 110 HOH HOH . J 4 HOH B 48 2050 119 HOH HOH . J 4 HOH B 49 2051 120 HOH HOH . J 4 HOH B 50 2052 121 HOH HOH . J 4 HOH B 51 2053 124 HOH HOH . J 4 HOH B 52 2054 125 HOH HOH . J 4 HOH B 53 2055 127 HOH HOH . J 4 HOH B 54 2056 129 HOH HOH . J 4 HOH B 55 2057 134 HOH HOH . J 4 HOH B 56 2058 135 HOH HOH . J 4 HOH B 57 2059 138 HOH HOH . J 4 HOH B 58 2060 139 HOH HOH . J 4 HOH B 59 2061 140 HOH HOH . J 4 HOH B 60 2062 141 HOH HOH . J 4 HOH B 61 2063 142 HOH HOH . J 4 HOH B 62 2064 143 HOH HOH . J 4 HOH B 63 2065 144 HOH HOH . J 4 HOH B 64 2066 145 HOH HOH . J 4 HOH B 65 2067 146 HOH HOH . J 4 HOH B 66 2068 147 HOH HOH . J 4 HOH B 67 2069 148 HOH HOH . J 4 HOH B 68 2070 149 HOH HOH . J 4 HOH B 69 2071 152 HOH HOH . J 4 HOH B 70 2072 153 HOH HOH . J 4 HOH B 71 2073 154 HOH HOH . J 4 HOH B 72 2074 157 HOH HOH . J 4 HOH B 73 2075 165 HOH HOH . J 4 HOH B 74 2076 178 HOH HOH . J 4 HOH B 75 2077 179 HOH HOH . J 4 HOH B 76 2078 180 HOH HOH . J 4 HOH B 77 2079 185 HOH HOH . J 4 HOH B 78 2080 186 HOH HOH . J 4 HOH B 79 2081 188 HOH HOH . J 4 HOH B 80 2082 189 HOH HOH . J 4 HOH B 81 2083 190 HOH HOH . J 4 HOH B 82 2084 192 HOH HOH . J 4 HOH B 83 2085 193 HOH HOH . J 4 HOH B 84 2086 196 HOH HOH . J 4 HOH B 85 2087 201 HOH HOH . J 4 HOH B 86 2088 206 HOH HOH . J 4 HOH B 87 2089 207 HOH HOH . J 4 HOH B 88 2090 208 HOH HOH . J 4 HOH B 89 2091 209 HOH HOH . J 4 HOH B 90 2092 210 HOH HOH . J 4 HOH B 91 2093 211 HOH HOH . J 4 HOH B 92 2094 212 HOH HOH . J 4 HOH B 93 2095 213 HOH HOH . J 4 HOH B 94 2096 219 HOH HOH . J 4 HOH B 95 2097 220 HOH HOH . J 4 HOH B 96 2098 222 HOH HOH . J 4 HOH B 97 2099 224 HOH HOH . J 4 HOH B 98 2100 231 HOH HOH . J 4 HOH B 99 2101 232 HOH HOH . J 4 HOH B 100 2102 233 HOH HOH . J 4 HOH B 101 2103 234 HOH HOH . J 4 HOH B 102 2104 235 HOH HOH . J 4 HOH B 103 2105 241 HOH HOH . J 4 HOH B 104 2106 242 HOH HOH . J 4 HOH B 105 2107 248 HOH HOH . J 4 HOH B 106 2108 249 HOH HOH . J 4 HOH B 107 2109 250 HOH HOH . J 4 HOH B 108 2110 251 HOH HOH . J 4 HOH B 109 2111 253 HOH HOH . J 4 HOH B 110 2112 258 HOH HOH . J 4 HOH B 111 2113 262 HOH HOH . J 4 HOH B 112 2114 264 HOH HOH . J 4 HOH B 113 2115 271 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . E 3 42.129 9.101 0.573 1 40.68 ? C1 MPD 374 A 1 HETATM 2 C C2 MPD . . . E 3 41.745 10.224 -0.382 1 39.73 ? C2 MPD 374 A 1 HETATM 3 O O2 MPD . . . E 3 40.335 10.059 -0.655 1 40.23 ? O2 MPD 374 A 1 HETATM 4 C CM MPD . . . E 3 42.461 10.056 -1.714 1 40.52 ? CM MPD 374 A 1 HETATM 5 C C3 MPD . . . E 3 41.974 11.624 0.206 1 39.46 ? C3 MPD 374 A 1 HETATM 6 C C4 MPD . . . E 3 43.201 11.804 1.114 1 39.37 ? C4 MPD 374 A 1 HETATM 7 O O4 MPD . . . E 3 44.402 11.482 0.448 1 39.68 ? O4 MPD 374 A 1 HETATM 8 C C5 MPD . . . E 3 43.309 13.236 1.619 1 38.91 ? C5 MPD 374 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 8 #