data_2G38 # _model_server_result.job_id PLvdLIxXIUe8E7M2EWWngA _model_server_result.datetime_utc '2024-12-01 01:13:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":199}' # _entry.id 2G38 # _exptl.entry_id 2G38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G38 _cell.length_a 40.862 _cell.length_b 46.758 _cell.length_c 283.125 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OE2 GLU 148 B GLU 148 1_555 E MN MN . B MN 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc2 B OE2 GLU 148 B GLU 148 3_555 E MN MN . B MN 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc3 B OD2 ASP 152 B ASP 152 1_555 E MN MN . B MN 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc4 B OD2 ASP 152 B ASP 152 3_555 E MN MN . B MN 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc5 D OE2 GLU 148 D GLU 148 1_555 F MN MN . D MN 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc6 D OE2 GLU 148 D GLU 148 4_556 F MN MN . D MN 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc7 D OD2 ASP 152 D ASP 152 1_555 F MN MN . D MN 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc8 D OD2 ASP 152 D ASP 152 4_556 F MN MN . D MN 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2G38 _atom_sites.fract_transf_matrix[1][1] 0.024473 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003532 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MN B 1 199 1 MN MN . F 3 MN D 1 199 2 MN MN . G 4 HOH A 1 100 8 HOH HOH . G 4 HOH A 2 101 15 HOH HOH . G 4 HOH A 3 102 28 HOH HOH . G 4 HOH A 4 103 35 HOH HOH . G 4 HOH A 5 104 48 HOH HOH . G 4 HOH A 6 105 57 HOH HOH . H 4 HOH B 1 200 3 HOH HOH . H 4 HOH B 2 201 7 HOH HOH . H 4 HOH B 3 202 10 HOH HOH . H 4 HOH B 4 203 11 HOH HOH . H 4 HOH B 5 204 12 HOH HOH . H 4 HOH B 6 205 13 HOH HOH . H 4 HOH B 7 206 14 HOH HOH . H 4 HOH B 8 207 16 HOH HOH . H 4 HOH B 9 208 20 HOH HOH . H 4 HOH B 10 209 21 HOH HOH . H 4 HOH B 11 210 22 HOH HOH . H 4 HOH B 12 211 23 HOH HOH . H 4 HOH B 13 212 24 HOH HOH . H 4 HOH B 14 213 26 HOH HOH . H 4 HOH B 15 214 27 HOH HOH . H 4 HOH B 16 215 29 HOH HOH . H 4 HOH B 17 216 30 HOH HOH . H 4 HOH B 18 217 31 HOH HOH . H 4 HOH B 19 218 33 HOH HOH . H 4 HOH B 20 219 36 HOH HOH . H 4 HOH B 21 220 37 HOH HOH . H 4 HOH B 22 221 40 HOH HOH . H 4 HOH B 23 222 41 HOH HOH . H 4 HOH B 24 223 51 HOH HOH . H 4 HOH B 25 224 52 HOH HOH . H 4 HOH B 26 225 53 HOH HOH . H 4 HOH B 27 226 54 HOH HOH . H 4 HOH B 28 227 55 HOH HOH . H 4 HOH B 29 228 58 HOH HOH . H 4 HOH B 30 229 59 HOH HOH . H 4 HOH B 31 230 62 HOH HOH . H 4 HOH B 32 231 63 HOH HOH . H 4 HOH B 33 232 64 HOH HOH . H 4 HOH B 34 233 65 HOH HOH . H 4 HOH B 35 234 66 HOH HOH . H 4 HOH B 36 235 68 HOH HOH . H 4 HOH B 37 236 71 HOH HOH . H 4 HOH B 38 237 72 HOH HOH . H 4 HOH B 39 238 73 HOH HOH . H 4 HOH B 40 239 74 HOH HOH . H 4 HOH B 41 240 75 HOH HOH . I 4 HOH C 1 100 5 HOH HOH . I 4 HOH C 2 101 19 HOH HOH . I 4 HOH C 3 102 32 HOH HOH . I 4 HOH C 4 103 34 HOH HOH . I 4 HOH C 5 104 38 HOH HOH . I 4 HOH C 6 105 49 HOH HOH . I 4 HOH C 7 106 50 HOH HOH . I 4 HOH C 8 107 67 HOH HOH . I 4 HOH C 9 108 70 HOH HOH . J 4 HOH D 1 200 4 HOH HOH . J 4 HOH D 2 201 6 HOH HOH . J 4 HOH D 3 202 9 HOH HOH . J 4 HOH D 4 203 17 HOH HOH . J 4 HOH D 5 204 18 HOH HOH . J 4 HOH D 6 205 25 HOH HOH . J 4 HOH D 7 206 39 HOH HOH . J 4 HOH D 8 207 42 HOH HOH . J 4 HOH D 9 208 43 HOH HOH . J 4 HOH D 10 209 45 HOH HOH . J 4 HOH D 11 210 46 HOH HOH . J 4 HOH D 12 211 47 HOH HOH . J 4 HOH D 13 212 56 HOH HOH . J 4 HOH D 14 213 60 HOH HOH . J 4 HOH D 15 214 61 HOH HOH . J 4 HOH D 16 215 69 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 0 _atom_site.Cartn_y 24.173 _atom_site.Cartn_z 70.781 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 5.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 199 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #