data_2G3B # _model_server_result.job_id -e2-ce3ei7nKBNotVqEb3A _model_server_result.datetime_utc '2025-09-04 15:12:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g3b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1004}' # _entry.id 2G3B # _exptl.entry_id 2G3B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G3B _cell.length_a 53.89 _cell.length_b 75.32 _cell.length_c 100.248 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G3B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N SER 2 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 A C THR 154 A THR 154 1_555 A N MSE 155 A MSE 155 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C THR 154 A THR 154 1_555 A N MSE 155 A MSE 155 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.325 ? covale ? covale4 A C MSE 155 A MSE 155 1_555 A N THR 156 A THR 156 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C MSE 155 A MSE 155 1_555 A N THR 156 A THR 156 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C VAL 187 A VAL 187 1_555 A N MSE 188 A MSE 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C MSE 188 A MSE 188 1_555 A N SER 189 A SER 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C THR 154 B THR 154 1_555 B N MSE 155 B MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 B C MSE 155 B MSE 155 1_555 B N THR 156 B THR 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale10 B C VAL 187 B VAL 187 1_555 B N MSE 188 B MSE 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 B C MSE 188 B MSE 188 1_555 B N SER 189 B SER 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2G3B _atom_sites.fract_transf_matrix[1][1] 0.0186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0133 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 1001 1001 GOL GOL . D 2 GOL A 1 1002 1002 GOL GOL . E 2 GOL A 1 1004 1004 GOL GOL . F 2 GOL B 1 1003 1003 GOL GOL . G 3 HOH A 1 1005 1 HOH HOH . G 3 HOH A 2 1006 4 HOH HOH . G 3 HOH A 3 1007 6 HOH HOH . G 3 HOH A 4 1008 7 HOH HOH . G 3 HOH A 5 1009 8 HOH HOH . G 3 HOH A 6 1010 9 HOH HOH . G 3 HOH A 7 1011 10 HOH HOH . G 3 HOH A 8 1012 14 HOH HOH . G 3 HOH A 9 1013 20 HOH HOH . G 3 HOH A 10 1014 21 HOH HOH . G 3 HOH A 11 1015 26 HOH HOH . G 3 HOH A 12 1016 29 HOH HOH . G 3 HOH A 13 1017 33 HOH HOH . G 3 HOH A 14 1018 35 HOH HOH . G 3 HOH A 15 1019 37 HOH HOH . G 3 HOH A 16 1020 38 HOH HOH . G 3 HOH A 17 1021 39 HOH HOH . G 3 HOH A 18 1022 40 HOH HOH . G 3 HOH A 19 1023 41 HOH HOH . G 3 HOH A 20 1024 43 HOH HOH . G 3 HOH A 21 1025 44 HOH HOH . G 3 HOH A 22 1026 47 HOH HOH . G 3 HOH A 23 1027 55 HOH HOH . G 3 HOH A 24 1028 56 HOH HOH . G 3 HOH A 25 1029 58 HOH HOH . G 3 HOH A 26 1030 63 HOH HOH . G 3 HOH A 27 1031 64 HOH HOH . G 3 HOH A 28 1032 65 HOH HOH . G 3 HOH A 29 1033 69 HOH HOH . G 3 HOH A 30 1034 71 HOH HOH . G 3 HOH A 31 1035 74 HOH HOH . G 3 HOH A 32 1036 76 HOH HOH . G 3 HOH A 33 1037 77 HOH HOH . G 3 HOH A 34 1038 79 HOH HOH . G 3 HOH A 35 1039 81 HOH HOH . G 3 HOH A 36 1040 84 HOH HOH . G 3 HOH A 37 1041 95 HOH HOH . G 3 HOH A 38 1042 97 HOH HOH . G 3 HOH A 39 1043 99 HOH HOH . G 3 HOH A 40 1044 102 HOH HOH . G 3 HOH A 41 1045 107 HOH HOH . G 3 HOH A 42 1046 109 HOH HOH . G 3 HOH A 43 1047 113 HOH HOH . G 3 HOH A 44 1048 115 HOH HOH . G 3 HOH A 45 1049 116 HOH HOH . G 3 HOH A 46 1050 117 HOH HOH . G 3 HOH A 47 1051 118 HOH HOH . G 3 HOH A 48 1052 124 HOH HOH . G 3 HOH A 49 1053 125 HOH HOH . G 3 HOH A 50 1054 126 HOH HOH . G 3 HOH A 51 1055 128 HOH HOH . G 3 HOH A 52 1056 131 HOH HOH . G 3 HOH A 53 1057 132 HOH HOH . G 3 HOH A 54 1058 135 HOH HOH . G 3 HOH A 55 1059 138 HOH HOH . G 3 HOH A 56 1060 145 HOH HOH . G 3 HOH A 57 1061 146 HOH HOH . G 3 HOH A 58 1062 148 HOH HOH . G 3 HOH A 59 1063 150 HOH HOH . G 3 HOH A 60 1064 152 HOH HOH . G 3 HOH A 61 1065 153 HOH HOH . G 3 HOH A 62 1066 154 HOH HOH . G 3 HOH A 63 1067 162 HOH HOH . G 3 HOH A 64 1068 166 HOH HOH . G 3 HOH A 65 1069 167 HOH HOH . G 3 HOH A 66 1070 168 HOH HOH . G 3 HOH A 67 1071 172 HOH HOH . G 3 HOH A 68 1072 173 HOH HOH . G 3 HOH A 69 1073 177 HOH HOH . G 3 HOH A 70 1074 181 HOH HOH . G 3 HOH A 71 1075 183 HOH HOH . G 3 HOH A 72 1076 185 HOH HOH . G 3 HOH A 73 1077 191 HOH HOH . G 3 HOH A 74 1078 194 HOH HOH . G 3 HOH A 75 1079 197 HOH HOH . G 3 HOH A 76 1080 200 HOH HOH . G 3 HOH A 77 1081 203 HOH HOH . G 3 HOH A 78 1082 205 HOH HOH . G 3 HOH A 79 1083 209 HOH HOH . G 3 HOH A 80 1084 212 HOH HOH . G 3 HOH A 81 1085 214 HOH HOH . G 3 HOH A 82 1086 215 HOH HOH . G 3 HOH A 83 1087 217 HOH HOH . G 3 HOH A 84 1088 218 HOH HOH . G 3 HOH A 85 1089 223 HOH HOH . G 3 HOH A 86 1090 228 HOH HOH . G 3 HOH A 87 1091 232 HOH HOH . G 3 HOH A 88 1092 240 HOH HOH . G 3 HOH A 89 1093 243 HOH HOH . G 3 HOH A 90 1094 253 HOH HOH . G 3 HOH A 91 1095 254 HOH HOH . G 3 HOH A 92 1096 258 HOH HOH . G 3 HOH A 93 1097 261 HOH HOH . G 3 HOH A 94 1098 262 HOH HOH . G 3 HOH A 95 1099 265 HOH HOH . G 3 HOH A 96 1100 267 HOH HOH . G 3 HOH A 97 1101 278 HOH HOH . G 3 HOH A 98 1102 279 HOH HOH . G 3 HOH A 99 1103 285 HOH HOH . G 3 HOH A 100 1104 295 HOH HOH . G 3 HOH A 101 1105 302 HOH HOH . G 3 HOH A 102 1106 313 HOH HOH . G 3 HOH A 103 1107 314 HOH HOH . G 3 HOH A 104 1108 336 HOH HOH . G 3 HOH A 105 1109 337 HOH HOH . G 3 HOH A 106 1110 340 HOH HOH . G 3 HOH A 107 1111 341 HOH HOH . G 3 HOH A 108 1112 342 HOH HOH . G 3 HOH A 109 1113 343 HOH HOH . G 3 HOH A 110 1114 344 HOH HOH . G 3 HOH A 111 1115 347 HOH HOH . G 3 HOH A 112 1116 348 HOH HOH . G 3 HOH A 113 1117 351 HOH HOH . G 3 HOH A 114 1118 352 HOH HOH . H 3 HOH B 1 1004 2 HOH HOH . H 3 HOH B 2 1005 3 HOH HOH . H 3 HOH B 3 1006 5 HOH HOH . H 3 HOH B 4 1007 11 HOH HOH . H 3 HOH B 5 1008 12 HOH HOH . H 3 HOH B 6 1009 13 HOH HOH . H 3 HOH B 7 1010 15 HOH HOH . H 3 HOH B 8 1011 17 HOH HOH . H 3 HOH B 9 1012 19 HOH HOH . H 3 HOH B 10 1013 22 HOH HOH . H 3 HOH B 11 1014 23 HOH HOH . H 3 HOH B 12 1015 24 HOH HOH . H 3 HOH B 13 1016 27 HOH HOH . H 3 HOH B 14 1017 30 HOH HOH . H 3 HOH B 15 1018 31 HOH HOH . H 3 HOH B 16 1019 32 HOH HOH . H 3 HOH B 17 1020 34 HOH HOH . H 3 HOH B 18 1021 36 HOH HOH . H 3 HOH B 19 1022 42 HOH HOH . H 3 HOH B 20 1023 46 HOH HOH . H 3 HOH B 21 1024 48 HOH HOH . H 3 HOH B 22 1025 49 HOH HOH . H 3 HOH B 23 1026 52 HOH HOH . H 3 HOH B 24 1027 53 HOH HOH . H 3 HOH B 25 1028 54 HOH HOH . H 3 HOH B 26 1029 57 HOH HOH . H 3 HOH B 27 1030 59 HOH HOH . H 3 HOH B 28 1031 60 HOH HOH . H 3 HOH B 29 1032 61 HOH HOH . H 3 HOH B 30 1033 62 HOH HOH . H 3 HOH B 31 1034 66 HOH HOH . H 3 HOH B 32 1035 70 HOH HOH . H 3 HOH B 33 1036 72 HOH HOH . H 3 HOH B 34 1037 73 HOH HOH . H 3 HOH B 35 1038 75 HOH HOH . H 3 HOH B 36 1039 78 HOH HOH . H 3 HOH B 37 1040 82 HOH HOH . H 3 HOH B 38 1041 85 HOH HOH . H 3 HOH B 39 1042 88 HOH HOH . H 3 HOH B 40 1043 89 HOH HOH . H 3 HOH B 41 1044 91 HOH HOH . H 3 HOH B 42 1045 92 HOH HOH . H 3 HOH B 43 1046 93 HOH HOH . H 3 HOH B 44 1047 94 HOH HOH . H 3 HOH B 45 1048 98 HOH HOH . H 3 HOH B 46 1049 103 HOH HOH . H 3 HOH B 47 1050 105 HOH HOH . H 3 HOH B 48 1051 110 HOH HOH . H 3 HOH B 49 1052 111 HOH HOH . H 3 HOH B 50 1053 112 HOH HOH . H 3 HOH B 51 1054 119 HOH HOH . H 3 HOH B 52 1055 121 HOH HOH . H 3 HOH B 53 1056 123 HOH HOH . H 3 HOH B 54 1057 127 HOH HOH . H 3 HOH B 55 1058 129 HOH HOH . H 3 HOH B 56 1059 134 HOH HOH . H 3 HOH B 57 1060 136 HOH HOH . H 3 HOH B 58 1061 139 HOH HOH . H 3 HOH B 59 1062 140 HOH HOH . H 3 HOH B 60 1063 141 HOH HOH . H 3 HOH B 61 1064 143 HOH HOH . H 3 HOH B 62 1065 144 HOH HOH . H 3 HOH B 63 1066 147 HOH HOH . H 3 HOH B 64 1067 151 HOH HOH . H 3 HOH B 65 1068 155 HOH HOH . H 3 HOH B 66 1069 156 HOH HOH . H 3 HOH B 67 1070 157 HOH HOH . H 3 HOH B 68 1071 158 HOH HOH . H 3 HOH B 69 1072 163 HOH HOH . H 3 HOH B 70 1073 164 HOH HOH . H 3 HOH B 71 1074 170 HOH HOH . H 3 HOH B 72 1075 174 HOH HOH . H 3 HOH B 73 1076 179 HOH HOH . H 3 HOH B 74 1077 180 HOH HOH . H 3 HOH B 75 1078 186 HOH HOH . H 3 HOH B 76 1079 187 HOH HOH . H 3 HOH B 77 1080 190 HOH HOH . H 3 HOH B 78 1081 193 HOH HOH . H 3 HOH B 79 1082 196 HOH HOH . H 3 HOH B 80 1083 198 HOH HOH . H 3 HOH B 81 1084 210 HOH HOH . H 3 HOH B 82 1085 211 HOH HOH . H 3 HOH B 83 1086 213 HOH HOH . H 3 HOH B 84 1087 230 HOH HOH . H 3 HOH B 85 1088 234 HOH HOH . H 3 HOH B 86 1089 238 HOH HOH . H 3 HOH B 87 1090 241 HOH HOH . H 3 HOH B 88 1091 242 HOH HOH . H 3 HOH B 89 1092 251 HOH HOH . H 3 HOH B 90 1093 252 HOH HOH . H 3 HOH B 91 1094 256 HOH HOH . H 3 HOH B 92 1095 260 HOH HOH . H 3 HOH B 93 1096 263 HOH HOH . H 3 HOH B 94 1097 266 HOH HOH . H 3 HOH B 95 1098 277 HOH HOH . H 3 HOH B 96 1099 280 HOH HOH . H 3 HOH B 97 1100 281 HOH HOH . H 3 HOH B 98 1101 282 HOH HOH . H 3 HOH B 99 1102 283 HOH HOH . H 3 HOH B 100 1103 286 HOH HOH . H 3 HOH B 101 1104 300 HOH HOH . H 3 HOH B 102 1105 301 HOH HOH . H 3 HOH B 103 1106 311 HOH HOH . H 3 HOH B 104 1107 312 HOH HOH . H 3 HOH B 105 1108 319 HOH HOH . H 3 HOH B 106 1109 324 HOH HOH . H 3 HOH B 107 1110 335 HOH HOH . H 3 HOH B 108 1111 338 HOH HOH . H 3 HOH B 109 1112 339 HOH HOH . H 3 HOH B 110 1113 345 HOH HOH . H 3 HOH B 111 1114 346 HOH HOH . H 3 HOH B 112 1115 349 HOH HOH . H 3 HOH B 113 1116 350 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 39.116 58.261 23.53 1 48.33 ? C1 GOL 1004 A 1 HETATM 2 O O1 GOL . . . E 2 39.425 59.188 24.559 1 46.46 ? O1 GOL 1004 A 1 HETATM 3 C C2 GOL . . . E 2 39.142 56.823 24.045 1 47.54 ? C2 GOL 1004 A 1 HETATM 4 O O2 GOL . . . E 2 39.094 56.802 25.456 1 46.27 ? O2 GOL 1004 A 1 HETATM 5 C C3 GOL . . . E 2 40.354 56.102 23.497 1 45.91 ? C3 GOL 1004 A 1 HETATM 6 O O3 GOL . . . E 2 40.202 54.694 23.347 1 45.95 ? O3 GOL 1004 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #