data_2G46 # _model_server_result.job_id '_CkMiYRTqfNFZG2XKBcBTw' _model_server_result.datetime_utc '2024-12-27 01:23:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g46 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 2G46 # _exptl.entry_id 2G46 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G46 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G46 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ARG 14 C ARG 214 1_555 B N MLZ 15 C MLZ 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale2 B C MLZ 15 C MLZ 215 1_555 B N SER 16 C SER 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale3 D C ARG 14 D ARG 214 1_555 D N MLZ 15 D MLZ 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? covale ? covale4 D C MLZ 15 D MLZ 215 1_555 D N SER 16 D SER 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2G46 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SAH A 1 301 301 SAH SAH . F 3 SAH B 1 302 302 SAH SAH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . E 3 -10.066 -0.278 -8.532 1 0 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . E 3 -9.872 0.914 -7.651 1 0 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . E 3 -11.045 0.889 -6.664 1 0 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . E 3 -12.177 1.773 -7.194 1 0 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . E 3 -12.13 3.377 -6.356 1 0 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . E 3 -8.543 0.808 -6.899 1 0 ? C SAH 301 A 1 HETATM 7 O O SAH . . . E 3 -8.227 1.691 -6.119 1 0 ? O SAH 301 A 1 HETATM 8 O OXT SAH . . . E 3 -7.785 -0.114 -7.153 1 0 ? OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . E 3 -13.922 3.616 -6.219 1 0 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . E 3 -14.37 4.587 -7.205 1 0 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . E 3 -14.894 3.899 -8.358 1 0 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . E 3 -15.475 5.453 -6.616 1 0 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . E 3 -15.077 6.826 -6.564 1 0 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . E 3 -16.677 5.273 -7.514 1 0 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . E 3 -17.069 6.517 -8.1 1 0 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . E 3 -16.268 4.272 -8.584 1 0 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . E 3 -17.143 3.085 -8.542 1 0 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . E 3 -17.039 1.982 -7.757 1 0 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . E 3 -18.08 1.228 -7.64 1 0 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . E 3 -19.004 1.899 -8.443 1 0 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . E 3 -20.339 1.638 -8.772 1 0 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . E 3 -21.011 0.583 -8.313 1 0 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . E 3 -20.956 2.507 -9.593 1 0 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . E 3 -20.302 3.57 -10.065 1 0 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . E 3 -19.041 3.912 -9.818 1 0 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . E 3 -18.444 3.027 -8.995 1 0 ? C4 SAH 301 A 1 HETATM 27 H H2 SAH . . . E 3 -20.864 4.231 -10.724 1 0 ? H2 SAH 301 A 1 HETATM 28 H HN1 SAH . . . E 3 -10.513 -1.052 -7.994 1 0 ? HN1 SAH 301 A 1 HETATM 29 H HN2 SAH . . . E 3 -9.142 -0.594 -8.889 1 0 ? HN2 SAH 301 A 1 HETATM 30 H HA SAH . . . E 3 -9.898 1.82 -8.238 1 0 ? HA SAH 301 A 1 HETATM 31 H HB1 SAH . . . E 3 -11.402 -0.123 -6.552 1 0 ? HB1 SAH 301 A 1 HETATM 32 H HB2 SAH . . . E 3 -10.716 1.263 -5.706 1 0 ? HB2 SAH 301 A 1 HETATM 33 H HG1 SAH . . . E 3 -13.126 1.295 -7.003 1 0 ? HG1 SAH 301 A 1 HETATM 34 H HG2 SAH . . . E 3 -12.053 1.918 -8.257 1 0 ? HG2 SAH 301 A 1 HETATM 35 H "H5'1" SAH . . . E 3 -14.423 2.674 -6.39 1 0 ? "H5'1" SAH 301 A 1 HETATM 36 H "H5'2" SAH . . . E 3 -14.161 3.974 -5.228 1 0 ? "H5'2" SAH 301 A 1 HETATM 37 H H4' SAH . . . E 3 -13.535 5.22 -7.508 1 0 ? H4' SAH 301 A 1 HETATM 38 H H3' SAH . . . E 3 -15.718 5.108 -5.611 1 0 ? H3' SAH 301 A 1 HETATM 39 H HO3' SAH . . . E 3 -15.87 7.357 -6.667 1 0 ? HO3' SAH 301 A 1 HETATM 40 H H2' SAH . . . E 3 -17.506 4.867 -6.934 1 0 ? H2' SAH 301 A 1 HETATM 41 H HO2' SAH . . . E 3 -17.997 6.442 -8.335 1 0 ? HO2' SAH 301 A 1 HETATM 42 H H1' SAH . . . E 3 -16.353 4.742 -9.564 1 0 ? H1' SAH 301 A 1 HETATM 43 H H8 SAH . . . E 3 -16.11 1.744 -7.242 1 0 ? H8 SAH 301 A 1 HETATM 44 H HN61 SAH . . . E 3 -21.824 0.247 -8.809 1 0 ? HN61 SAH 301 A 1 HETATM 45 H HN62 SAH . . . E 3 -20.716 0.128 -7.461 1 0 ? HN62 SAH 301 A 1 # _model_server_stats.io_time_ms 134 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 147 _model_server_stats.query_time_ms 5701 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 45 #