data_2G4H # _model_server_result.job_id QYoqsVjGsAwHfpq_30Y3cg _model_server_result.datetime_utc '2024-11-05 04:06:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g4h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":209}' # _entry.id 2G4H # _exptl.entry_id 2G4H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G4H _cell.length_a 182.16 _cell.length_b 182.16 _cell.length_c 182.16 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G4H _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 11 A GLU 15 1_555 G CD CD . A CD 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc2 A OE1 GLU 11 A GLU 15 1_555 G CD CD . A CD 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc3 A OD1 ASP 38 A ASP 42 1_555 J CD CD . A CD 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc4 A OE1 GLU 45 A GLU 49 1_555 H CD CD . A CD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc5 A OE2 GLU 45 A GLU 49 1_555 H CD CD . A CD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc6 A SG CYS 48 A CYS 52 1_555 J CD CD . A CD 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.133 ? metalc ? metalc7 A OE1 GLU 56 A GLU 60 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc8 A OE2 GLU 56 A GLU 60 1_555 F CD CD . A CD 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc9 A OE2 GLU 57 A GLU 61 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? metalc ? metalc10 A OE2 GLU 60 A GLU 64 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc11 A OE1 GLU 60 A GLU 64 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc12 A OD1 ASP 80 A ASP 84 51_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc13 A OD2 ASP 80 A ASP 84 51_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc14 A OD1 ASP 80 A ASP 84 22_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc15 A OD2 ASP 80 A ASP 84 22_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc16 A OE1 GLN 82 A GLN 86 1_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc17 A OE1 GLN 82 A GLN 86 72_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc18 A OE2 GLU 88 A GLU 92 1_555 I CD CD . A CD 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc19 A OE1 GLU 88 A GLU 92 1_555 I CD CD . A CD 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? metalc ? metalc20 A OD1 ASP 127 A ASP 131 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc21 A OE1 GLU 130 A GLU 134 1_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc22 A OE1 GLU 130 A GLU 134 12_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc23 A OE2 GLU 130 A GLU 134 12_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.086 ? metalc ? metalc24 A OE1 GLU 130 A GLU 134 6_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.13 ? metalc ? metalc25 E CD CD . A CD 204 1_555 M O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? metalc ? metalc26 E CD CD . A CD 204 1_555 M O HOH . A HOH 306 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc27 E CD CD . A CD 204 1_555 M O HOH . A HOH 306 12_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2G4H _atom_sites.fract_transf_matrix[1][1] 0.00549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00549 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00549 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 201 201 CD CD . C 2 CD A 1 202 202 CD CD . D 2 CD A 1 203 203 CD CD . E 2 CD A 1 204 204 CD CD . F 2 CD A 1 205 205 CD CD . G 2 CD A 1 206 206 CD CD . H 2 CD A 1 207 207 CD CD . I 2 CD A 1 208 208 CD CD . J 2 CD A 1 209 209 CD CD . K 3 CL A 1 210 210 CL CL . L 3 CL A 1 211 211 CL CL . M 4 HOH A 1 212 1 HOH HOH . M 4 HOH A 2 213 3 HOH HOH . M 4 HOH A 3 214 4 HOH HOH . M 4 HOH A 4 215 5 HOH HOH . M 4 HOH A 5 216 6 HOH HOH . M 4 HOH A 6 217 7 HOH HOH . M 4 HOH A 7 218 8 HOH HOH . M 4 HOH A 8 219 9 HOH HOH . M 4 HOH A 9 220 10 HOH HOH . M 4 HOH A 10 221 11 HOH HOH . M 4 HOH A 11 222 12 HOH HOH . M 4 HOH A 12 223 13 HOH HOH . M 4 HOH A 13 224 14 HOH HOH . M 4 HOH A 14 225 15 HOH HOH . M 4 HOH A 15 226 16 HOH HOH . M 4 HOH A 16 227 17 HOH HOH . M 4 HOH A 17 228 18 HOH HOH . M 4 HOH A 18 229 19 HOH HOH . M 4 HOH A 19 230 20 HOH HOH . M 4 HOH A 20 231 21 HOH HOH . M 4 HOH A 21 232 22 HOH HOH . M 4 HOH A 22 233 24 HOH HOH . M 4 HOH A 23 234 27 HOH HOH . M 4 HOH A 24 235 31 HOH HOH . M 4 HOH A 25 236 32 HOH HOH . M 4 HOH A 26 237 34 HOH HOH . M 4 HOH A 27 238 35 HOH HOH . M 4 HOH A 28 239 36 HOH HOH . M 4 HOH A 29 240 37 HOH HOH . M 4 HOH A 30 241 38 HOH HOH . M 4 HOH A 31 242 39 HOH HOH . M 4 HOH A 32 243 40 HOH HOH . M 4 HOH A 33 244 41 HOH HOH . M 4 HOH A 34 245 42 HOH HOH . M 4 HOH A 35 246 43 HOH HOH . M 4 HOH A 36 247 44 HOH HOH . M 4 HOH A 37 248 45 HOH HOH . M 4 HOH A 38 249 46 HOH HOH . M 4 HOH A 39 250 47 HOH HOH . M 4 HOH A 40 251 48 HOH HOH . M 4 HOH A 41 252 49 HOH HOH . M 4 HOH A 42 253 51 HOH HOH . M 4 HOH A 43 254 52 HOH HOH . M 4 HOH A 44 255 53 HOH HOH . M 4 HOH A 45 256 54 HOH HOH . M 4 HOH A 46 257 55 HOH HOH . M 4 HOH A 47 258 56 HOH HOH . M 4 HOH A 48 259 57 HOH HOH . M 4 HOH A 49 260 58 HOH HOH . M 4 HOH A 50 261 59 HOH HOH . M 4 HOH A 51 262 60 HOH HOH . M 4 HOH A 52 263 61 HOH HOH . M 4 HOH A 53 264 62 HOH HOH . M 4 HOH A 54 265 63 HOH HOH . M 4 HOH A 55 266 65 HOH HOH . M 4 HOH A 56 267 66 HOH HOH . M 4 HOH A 57 268 67 HOH HOH . M 4 HOH A 58 269 68 HOH HOH . M 4 HOH A 59 270 69 HOH HOH . M 4 HOH A 60 271 70 HOH HOH . M 4 HOH A 61 272 71 HOH HOH . M 4 HOH A 62 273 72 HOH HOH . M 4 HOH A 63 274 74 HOH HOH . M 4 HOH A 64 275 76 HOH HOH . M 4 HOH A 65 276 77 HOH HOH . M 4 HOH A 66 277 78 HOH HOH . M 4 HOH A 67 278 79 HOH HOH . M 4 HOH A 68 279 80 HOH HOH . M 4 HOH A 69 280 81 HOH HOH . M 4 HOH A 70 281 82 HOH HOH . M 4 HOH A 71 282 83 HOH HOH . M 4 HOH A 72 283 84 HOH HOH . M 4 HOH A 73 284 85 HOH HOH . M 4 HOH A 74 285 86 HOH HOH . M 4 HOH A 75 286 87 HOH HOH . M 4 HOH A 76 287 88 HOH HOH . M 4 HOH A 77 288 89 HOH HOH . M 4 HOH A 78 289 94 HOH HOH . M 4 HOH A 79 290 95 HOH HOH . M 4 HOH A 80 291 98 HOH HOH . M 4 HOH A 81 292 101 HOH HOH . M 4 HOH A 82 293 102 HOH HOH . M 4 HOH A 83 294 103 HOH HOH . M 4 HOH A 84 295 104 HOH HOH . M 4 HOH A 85 296 105 HOH HOH . M 4 HOH A 86 297 106 HOH HOH . M 4 HOH A 87 298 107 HOH HOH . M 4 HOH A 88 299 108 HOH HOH . M 4 HOH A 89 300 109 HOH HOH . M 4 HOH A 90 301 110 HOH HOH . M 4 HOH A 91 302 111 HOH HOH . M 4 HOH A 92 303 112 HOH HOH . M 4 HOH A 93 304 113 HOH HOH . M 4 HOH A 94 305 114 HOH HOH . M 4 HOH A 95 306 115 HOH HOH . M 4 HOH A 96 307 116 HOH HOH . M 4 HOH A 97 308 117 HOH HOH . M 4 HOH A 98 309 118 HOH HOH . M 4 HOH A 99 310 119 HOH HOH . M 4 HOH A 100 311 120 HOH HOH . M 4 HOH A 101 312 121 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 2 _atom_site.Cartn_x 39.253 _atom_site.Cartn_y 7.316 _atom_site.Cartn_z 18.659 _atom_site.occupancy 0.05 _atom_site.B_iso_or_equiv 19.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 209 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #