data_2G4I # _model_server_result.job_id VsPSGKDMz7NFiGy-N-xR-g _model_server_result.datetime_utc '2024-11-05 12:25:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g4i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":241}' # _entry.id 2G4I # _exptl.entry_id 2G4I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G4I _cell.length_a 61.64 _cell.length_b 86.05 _cell.length_c 88.45 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G4I _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_765 -x+2,-y+1,z -1 0 0 0 -1 0 0 0 1 123.28 86.05 0 3 'crystal symmetry operation' 3_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 123.28 0 88.45 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 86.05 88.45 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 B MN MN . A MN 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 B MN MN . A MN 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc3 A OD1 ASP 10 A ASP 10 1_555 C CA CA . A CA 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 C CA CA . A CA 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 C CA CA . A CA 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 C CA CA . A CA 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 B MN MN . A MN 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 C CA CA . A CA 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 B MN MN . A MN 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc10 A O LEU 107 A LEU 107 1_555 D NA NA . A NA 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc11 A O ASN 131 A ASN 131 1_555 D NA NA . A NA 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc12 A O GLY 152 A GLY 152 1_555 D NA NA . A NA 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc13 A OD1 ASN 153 A ASN 153 1_555 D NA NA . A NA 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc14 B MN MN . A MN 241 1_555 H O HOH . A HOH 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc15 C CA CA . A CA 242 1_555 H O HOH . A HOH 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2G4I _atom_sites.fract_transf_matrix[1][1] 0.016223 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011306 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 241 241 MN MN . C 3 CA A 1 242 242 CA CA . D 4 NA A 1 243 243 NA NA . E 5 CL A 1 244 244 CL CL . F 5 CL A 1 245 245 CL CL . G 5 CL A 1 246 246 CL CL . H 6 HOH A 1 247 3 HOH HOH . H 6 HOH A 2 248 4 HOH HOH . H 6 HOH A 3 249 6 HOH HOH . H 6 HOH A 4 250 7 HOH HOH . H 6 HOH A 5 251 10 HOH HOH . H 6 HOH A 6 252 12 HOH HOH . H 6 HOH A 7 253 14 HOH HOH . H 6 HOH A 8 254 17 HOH HOH . H 6 HOH A 9 255 20 HOH HOH . H 6 HOH A 10 256 21 HOH HOH . H 6 HOH A 11 257 25 HOH HOH . H 6 HOH A 12 258 27 HOH HOH . H 6 HOH A 13 259 28 HOH HOH . H 6 HOH A 14 260 37 HOH HOH . H 6 HOH A 15 261 38 HOH HOH . H 6 HOH A 16 262 44 HOH HOH . H 6 HOH A 17 263 45 HOH HOH . H 6 HOH A 18 264 46 HOH HOH . H 6 HOH A 19 265 47 HOH HOH . H 6 HOH A 20 266 48 HOH HOH . H 6 HOH A 21 267 49 HOH HOH . H 6 HOH A 22 268 50 HOH HOH . H 6 HOH A 23 269 51 HOH HOH . H 6 HOH A 24 270 52 HOH HOH . H 6 HOH A 25 271 53 HOH HOH . H 6 HOH A 26 272 54 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 46.888 _atom_site.Cartn_y 67.912 _atom_site.Cartn_z 27.193 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 241 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #