data_2G5H # _model_server_result.job_id Ym9Iy5oi04PrsQzyzAkMUQ _model_server_result.datetime_utc '2024-11-13 05:09:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g5h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 2G5H # _exptl.entry_id 2G5H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G5H _cell.length_a 70.922 _cell.length_b 92.041 _cell.length_c 181.451 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G5H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NE2 HIS 12 B HIS 12 1_555 D MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc2 B OE1 GLU 124 B GLU 124 1_555 D MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc3 B OE2 GLU 124 B GLU 124 1_555 D MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc4 B OE1 GLU 150 B GLU 150 1_555 D MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2G5H _atom_sites.fract_transf_matrix[1][1] 0.0141 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010865 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005511 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG B 1 501 501 MG MG . E 5 HOH A 1 486 1 HOH HOH . E 5 HOH A 2 487 2 HOH HOH . E 5 HOH A 3 488 3 HOH HOH . E 5 HOH A 4 489 4 HOH HOH . E 5 HOH A 5 490 5 HOH HOH . E 5 HOH A 6 491 6 HOH HOH . E 5 HOH A 7 492 7 HOH HOH . E 5 HOH A 8 493 8 HOH HOH . E 5 HOH A 9 494 9 HOH HOH . E 5 HOH A 10 495 10 HOH HOH . E 5 HOH A 11 496 11 HOH HOH . E 5 HOH A 12 497 12 HOH HOH . E 5 HOH A 13 498 13 HOH HOH . E 5 HOH A 14 499 14 HOH HOH . E 5 HOH A 15 500 15 HOH HOH . E 5 HOH A 16 501 17 HOH HOH . E 5 HOH A 17 502 18 HOH HOH . E 5 HOH A 18 503 19 HOH HOH . E 5 HOH A 19 504 21 HOH HOH . E 5 HOH A 20 505 22 HOH HOH . E 5 HOH A 21 506 23 HOH HOH . E 5 HOH A 22 507 24 HOH HOH . E 5 HOH A 23 508 25 HOH HOH . E 5 HOH A 24 509 26 HOH HOH . E 5 HOH A 25 510 27 HOH HOH . E 5 HOH A 26 511 28 HOH HOH . E 5 HOH A 27 512 29 HOH HOH . E 5 HOH A 28 513 30 HOH HOH . E 5 HOH A 29 514 31 HOH HOH . E 5 HOH A 30 515 33 HOH HOH . E 5 HOH A 31 516 34 HOH HOH . E 5 HOH A 32 517 35 HOH HOH . E 5 HOH A 33 518 36 HOH HOH . E 5 HOH A 34 519 37 HOH HOH . E 5 HOH A 35 520 38 HOH HOH . E 5 HOH A 36 521 39 HOH HOH . E 5 HOH A 37 522 41 HOH HOH . E 5 HOH A 38 523 46 HOH HOH . E 5 HOH A 39 524 49 HOH HOH . E 5 HOH A 40 525 51 HOH HOH . E 5 HOH A 41 526 52 HOH HOH . E 5 HOH A 42 527 53 HOH HOH . E 5 HOH A 43 528 54 HOH HOH . E 5 HOH A 44 529 55 HOH HOH . E 5 HOH A 45 530 58 HOH HOH . E 5 HOH A 46 531 59 HOH HOH . E 5 HOH A 47 532 60 HOH HOH . E 5 HOH A 48 533 65 HOH HOH . E 5 HOH A 49 534 66 HOH HOH . E 5 HOH A 50 535 69 HOH HOH . E 5 HOH A 51 536 70 HOH HOH . E 5 HOH A 52 537 71 HOH HOH . E 5 HOH A 53 538 73 HOH HOH . E 5 HOH A 54 539 76 HOH HOH . E 5 HOH A 55 540 77 HOH HOH . E 5 HOH A 56 541 78 HOH HOH . E 5 HOH A 57 542 80 HOH HOH . E 5 HOH A 58 543 84 HOH HOH . E 5 HOH A 59 544 86 HOH HOH . E 5 HOH A 60 545 88 HOH HOH . E 5 HOH A 61 546 95 HOH HOH . E 5 HOH A 62 547 97 HOH HOH . E 5 HOH A 63 548 98 HOH HOH . E 5 HOH A 64 549 99 HOH HOH . E 5 HOH A 65 550 101 HOH HOH . E 5 HOH A 66 551 102 HOH HOH . E 5 HOH A 67 552 103 HOH HOH . E 5 HOH A 68 553 105 HOH HOH . E 5 HOH A 69 554 109 HOH HOH . E 5 HOH A 70 555 117 HOH HOH . E 5 HOH A 71 556 119 HOH HOH . E 5 HOH A 72 557 120 HOH HOH . E 5 HOH A 73 558 121 HOH HOH . E 5 HOH A 74 559 122 HOH HOH . E 5 HOH A 75 560 124 HOH HOH . E 5 HOH A 76 561 125 HOH HOH . E 5 HOH A 77 562 127 HOH HOH . E 5 HOH A 78 563 130 HOH HOH . E 5 HOH A 79 564 131 HOH HOH . E 5 HOH A 80 565 132 HOH HOH . E 5 HOH A 81 566 134 HOH HOH . F 5 HOH B 1 502 16 HOH HOH . F 5 HOH B 2 503 20 HOH HOH . F 5 HOH B 3 504 32 HOH HOH . F 5 HOH B 4 505 40 HOH HOH . F 5 HOH B 5 506 44 HOH HOH . F 5 HOH B 6 507 45 HOH HOH . F 5 HOH B 7 508 47 HOH HOH . F 5 HOH B 8 509 48 HOH HOH . F 5 HOH B 9 510 56 HOH HOH . F 5 HOH B 10 511 57 HOH HOH . F 5 HOH B 11 512 61 HOH HOH . F 5 HOH B 12 513 64 HOH HOH . F 5 HOH B 13 514 67 HOH HOH . F 5 HOH B 14 515 68 HOH HOH . F 5 HOH B 15 516 72 HOH HOH . F 5 HOH B 16 517 75 HOH HOH . F 5 HOH B 17 518 79 HOH HOH . F 5 HOH B 18 519 81 HOH HOH . F 5 HOH B 19 520 82 HOH HOH . F 5 HOH B 20 521 83 HOH HOH . F 5 HOH B 21 522 85 HOH HOH . F 5 HOH B 22 523 87 HOH HOH . F 5 HOH B 23 524 89 HOH HOH . F 5 HOH B 24 525 90 HOH HOH . F 5 HOH B 25 526 93 HOH HOH . F 5 HOH B 26 527 94 HOH HOH . F 5 HOH B 27 528 96 HOH HOH . F 5 HOH B 28 529 100 HOH HOH . F 5 HOH B 29 530 104 HOH HOH . F 5 HOH B 30 531 106 HOH HOH . F 5 HOH B 31 532 107 HOH HOH . F 5 HOH B 32 533 110 HOH HOH . F 5 HOH B 33 534 112 HOH HOH . F 5 HOH B 34 535 113 HOH HOH . F 5 HOH B 35 536 114 HOH HOH . F 5 HOH B 36 537 115 HOH HOH . F 5 HOH B 37 538 116 HOH HOH . F 5 HOH B 38 539 118 HOH HOH . F 5 HOH B 39 540 123 HOH HOH . F 5 HOH B 40 541 126 HOH HOH . F 5 HOH B 41 542 128 HOH HOH . F 5 HOH B 42 543 129 HOH HOH . F 5 HOH B 43 544 133 HOH HOH . F 5 HOH B 44 545 135 HOH HOH . F 5 HOH B 45 546 137 HOH HOH . F 5 HOH B 46 547 138 HOH HOH . F 5 HOH B 47 548 139 HOH HOH . G 5 HOH C 1 101 42 HOH HOH . G 5 HOH C 2 102 43 HOH HOH . G 5 HOH C 3 103 50 HOH HOH . G 5 HOH C 4 104 62 HOH HOH . G 5 HOH C 5 105 63 HOH HOH . G 5 HOH C 6 106 74 HOH HOH . G 5 HOH C 7 107 91 HOH HOH . G 5 HOH C 8 108 92 HOH HOH . G 5 HOH C 9 109 108 HOH HOH . G 5 HOH C 10 110 111 HOH HOH . G 5 HOH C 11 111 136 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 20.827 _atom_site.Cartn_y 42.796 _atom_site.Cartn_z 8.924 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 43.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #