data_2G5I # _model_server_result.job_id '_sHV-rNzUaqhFHSLgpWwwg' _model_server_result.datetime_utc '2024-11-28 05:33:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g5i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 2G5I # _exptl.entry_id 2G5I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G5I _cell.length_a 76.86 _cell.length_b 85.279 _cell.length_c 183.625 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G5I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NE2 HIS 12 B HIS 12 1_555 D MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc2 B OE2 GLU 124 B GLU 124 1_555 D MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc3 B OE1 GLU 124 B GLU 124 1_555 D MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc4 B OE2 GLU 150 B GLU 150 1_555 D MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.727 ? metalc ? metalc5 D MG MG . B MG 501 1_555 G O HOH . B HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2G5I _atom_sites.fract_transf_matrix[1][1] 0.013011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG B 1 501 501 MG MG . E 5 ADP B 1 601 601 ADP ADP . F 6 HOH A 1 486 4 HOH HOH . F 6 HOH A 2 487 9 HOH HOH . F 6 HOH A 3 488 10 HOH HOH . F 6 HOH A 4 489 11 HOH HOH . F 6 HOH A 5 490 13 HOH HOH . F 6 HOH A 6 491 19 HOH HOH . F 6 HOH A 7 492 25 HOH HOH . F 6 HOH A 8 493 26 HOH HOH . F 6 HOH A 9 494 28 HOH HOH . F 6 HOH A 10 495 31 HOH HOH . F 6 HOH A 11 496 35 HOH HOH . F 6 HOH A 12 497 37 HOH HOH . F 6 HOH A 13 498 39 HOH HOH . F 6 HOH A 14 499 41 HOH HOH . F 6 HOH A 15 500 45 HOH HOH . F 6 HOH A 16 501 46 HOH HOH . F 6 HOH A 17 502 48 HOH HOH . F 6 HOH A 18 503 49 HOH HOH . F 6 HOH A 19 504 52 HOH HOH . F 6 HOH A 20 505 53 HOH HOH . F 6 HOH A 21 506 54 HOH HOH . F 6 HOH A 22 507 56 HOH HOH . F 6 HOH A 23 508 62 HOH HOH . F 6 HOH A 24 509 63 HOH HOH . F 6 HOH A 25 510 65 HOH HOH . F 6 HOH A 26 511 67 HOH HOH . F 6 HOH A 27 512 69 HOH HOH . F 6 HOH A 28 513 74 HOH HOH . F 6 HOH A 29 514 75 HOH HOH . F 6 HOH A 30 515 76 HOH HOH . F 6 HOH A 31 516 77 HOH HOH . F 6 HOH A 32 517 78 HOH HOH . F 6 HOH A 33 518 81 HOH HOH . F 6 HOH A 34 519 82 HOH HOH . F 6 HOH A 35 520 83 HOH HOH . F 6 HOH A 36 521 84 HOH HOH . F 6 HOH A 37 522 85 HOH HOH . F 6 HOH A 38 523 86 HOH HOH . F 6 HOH A 39 524 87 HOH HOH . F 6 HOH A 40 525 88 HOH HOH . F 6 HOH A 41 526 89 HOH HOH . F 6 HOH A 42 527 90 HOH HOH . G 6 HOH B 1 602 1 HOH HOH . G 6 HOH B 2 603 2 HOH HOH . G 6 HOH B 3 604 3 HOH HOH . G 6 HOH B 4 605 5 HOH HOH . G 6 HOH B 5 606 8 HOH HOH . G 6 HOH B 6 607 12 HOH HOH . G 6 HOH B 7 608 15 HOH HOH . G 6 HOH B 8 609 16 HOH HOH . G 6 HOH B 9 610 17 HOH HOH . G 6 HOH B 10 611 18 HOH HOH . G 6 HOH B 11 612 21 HOH HOH . G 6 HOH B 12 613 22 HOH HOH . G 6 HOH B 13 614 24 HOH HOH . G 6 HOH B 14 615 27 HOH HOH . G 6 HOH B 15 616 29 HOH HOH . G 6 HOH B 16 617 30 HOH HOH . G 6 HOH B 17 618 33 HOH HOH . G 6 HOH B 18 619 34 HOH HOH . G 6 HOH B 19 620 36 HOH HOH . G 6 HOH B 20 621 38 HOH HOH . G 6 HOH B 21 622 40 HOH HOH . G 6 HOH B 22 623 42 HOH HOH . G 6 HOH B 23 624 43 HOH HOH . G 6 HOH B 24 625 44 HOH HOH . G 6 HOH B 25 626 47 HOH HOH . G 6 HOH B 26 627 55 HOH HOH . G 6 HOH B 27 628 57 HOH HOH . G 6 HOH B 28 629 58 HOH HOH . G 6 HOH B 29 630 59 HOH HOH . G 6 HOH B 30 631 60 HOH HOH . G 6 HOH B 31 632 64 HOH HOH . G 6 HOH B 32 633 66 HOH HOH . G 6 HOH B 33 634 68 HOH HOH . G 6 HOH B 34 635 70 HOH HOH . G 6 HOH B 35 636 71 HOH HOH . G 6 HOH B 36 637 72 HOH HOH . G 6 HOH B 37 638 73 HOH HOH . G 6 HOH B 38 639 79 HOH HOH . G 6 HOH B 39 640 80 HOH HOH . H 6 HOH C 1 101 6 HOH HOH . H 6 HOH C 2 102 7 HOH HOH . H 6 HOH C 3 103 14 HOH HOH . H 6 HOH C 4 104 20 HOH HOH . H 6 HOH C 5 105 23 HOH HOH . H 6 HOH C 6 106 32 HOH HOH . H 6 HOH C 7 107 50 HOH HOH . H 6 HOH C 8 108 51 HOH HOH . H 6 HOH C 9 109 61 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 12.596 _atom_site.Cartn_y -0.582 _atom_site.Cartn_z -16.274 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #