data_2G5O # _model_server_result.job_id YfZBGzdLquFsGpcQnQQKBw _model_server_result.datetime_utc '2025-07-03 15:03:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g5o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":555}' # _entry.id 2G5O # _exptl.entry_id 2G5O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 326.472 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (9ALPHA,13BETA,17BETA)-2-[(1Z)-BUT-1-EN-1-YL]ESTRA-1,3,5(10)-TRIENE-3,17-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.05 _cell.angle_gamma 90 _cell.entry_id 2G5O _cell.length_a 56.069 _cell.length_b 83.347 _cell.length_c 58.829 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G5O _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 83 A GLU 380 1_555 A N CME 84 A CME 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C CME 84 A CME 381 1_555 A N ALA 85 A ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C LYS 119 A LYS 416 1_555 A N CME 120 A CME 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C CME 120 A CME 417 1_555 A N VAL 121 A VAL 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C LYS 232 A LYS 529 1_555 A N CME 233 A CME 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C CME 233 A CME 530 1_555 A N LYS 234 A LYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 B C GLU 83 B GLU 380 1_555 B N CME 84 B CME 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C CME 84 B CME 381 1_555 B N ALA 85 B ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 B C LYS 119 B LYS 416 1_555 B N CME 120 B CME 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 B C CME 120 B CME 417 1_555 B N VAL 121 B VAL 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 B C LYS 232 B LYS 529 1_555 B N CME 233 B CME 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale12 B C CME 233 B CME 530 1_555 B N LYS 234 B LYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C22 H30 O2' _chem_comp.formula_weight 326.472 _chem_comp.id DRQ _chem_comp.mon_nstd_flag . _chem_comp.name (9ALPHA,13BETA,17BETA)-2-[(1Z)-BUT-1-EN-1-YL]ESTRA-1,3,5(10)-TRIENE-3,17-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAX CAW DRQ sing 104 n n CAX HAX1 DRQ sing 105 n n CAX HAX2 DRQ sing 106 n n CAX HAX3 DRQ sing 107 n n CAW CAV DRQ sing 108 n n CAW HAW1 DRQ sing 109 n n CAW HAW2 DRQ sing 110 n n CAV CAU DRQ doub 111 z n CAV HAV DRQ sing 112 n n CAU CAC DRQ sing 113 n n CAU HAU DRQ sing 114 n n CAC CAD DRQ doub 115 n y CAC CAA DRQ sing 116 n y CAD CAT DRQ sing 117 n y CAD HAD DRQ sing 118 n n CAT CAS DRQ sing 119 n n CAT CAF DRQ doub 120 n y CAS CAR DRQ sing 121 n n CAS CAI DRQ sing 122 n n CAS HAS DRQ sing 123 n n CAR CAQ DRQ sing 124 n n CAR HAR1 DRQ sing 125 n n CAR HAR2 DRQ sing 126 n n CAQ CAO DRQ sing 127 n n CAQ HAQ1 DRQ sing 128 n n CAQ HAQ2 DRQ sing 129 n n CAO CAP DRQ sing 130 n n CAO CAM DRQ sing 131 n n CAO CAJ DRQ sing 132 n n CAP HAP1 DRQ sing 133 n n CAP HAP2 DRQ sing 134 n n CAP HAP3 DRQ sing 135 n n CAM OAN DRQ sing 136 n n CAM CAL DRQ sing 137 n n CAM HAM DRQ sing 138 n n OAN HOAN DRQ sing 139 n n CAL CAK DRQ sing 140 n n CAL HAL1 DRQ sing 141 n n CAL HAL2 DRQ sing 142 n n CAK CAJ DRQ sing 143 n n CAK HAK1 DRQ sing 144 n n CAK HAK2 DRQ sing 145 n n CAJ CAI DRQ sing 146 n n CAJ HAJ DRQ sing 147 n n CAI CAH DRQ sing 148 n n CAI HAI DRQ sing 149 n n CAH CAG DRQ sing 150 n n CAH HAH1 DRQ sing 151 n n CAH HAH2 DRQ sing 152 n n CAG CAF DRQ sing 153 n n CAG HAG1 DRQ sing 154 n n CAG HAG2 DRQ sing 155 n n CAF CAE DRQ sing 156 n y CAE CAA DRQ doub 157 n y CAE HAE DRQ sing 158 n n CAA OAB DRQ sing 159 n n OAB HOAB DRQ sing 160 n n # _atom_sites.entry_id 2G5O _atom_sites.fract_transf_matrix[1][1] 0.017835 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006158 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017983 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 DRQ A 1 201 1 DRQ DRG . F 3 DRQ B 1 555 1 DRQ DRG . G 4 HOH A 1 1 1 HOH HOH . G 4 HOH A 2 2 2 HOH HOH . G 4 HOH A 3 3 3 HOH HOH . G 4 HOH A 4 4 4 HOH HOH . G 4 HOH A 5 5 5 HOH HOH . G 4 HOH A 6 8 8 HOH HOH . G 4 HOH A 7 9 9 HOH HOH . G 4 HOH A 8 12 12 HOH HOH . G 4 HOH A 9 15 15 HOH HOH . G 4 HOH A 10 16 16 HOH HOH . G 4 HOH A 11 17 17 HOH HOH . G 4 HOH A 12 18 18 HOH HOH . G 4 HOH A 13 19 19 HOH HOH . G 4 HOH A 14 20 20 HOH HOH . G 4 HOH A 15 28 28 HOH HOH . G 4 HOH A 16 29 29 HOH HOH . G 4 HOH A 17 30 30 HOH HOH . G 4 HOH A 18 31 31 HOH HOH . G 4 HOH A 19 32 32 HOH HOH . H 4 HOH B 1 6 6 HOH HOH . H 4 HOH B 2 7 7 HOH HOH . H 4 HOH B 3 10 10 HOH HOH . H 4 HOH B 4 11 11 HOH HOH . H 4 HOH B 5 13 13 HOH HOH . H 4 HOH B 6 14 14 HOH HOH . H 4 HOH B 7 21 21 HOH HOH . H 4 HOH B 8 22 22 HOH HOH . H 4 HOH B 9 23 23 HOH HOH . H 4 HOH B 10 24 24 HOH HOH . H 4 HOH B 11 25 25 HOH HOH . H 4 HOH B 12 26 26 HOH HOH . H 4 HOH B 13 33 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAX DRQ . . . F 3 -34.093 -6.17 25.951 1 53.79 ? CAX DRQ 555 B 1 HETATM 2 C CAW DRQ . . . F 3 -32.767 -5.833 26.662 1 52.45 ? CAW DRQ 555 B 1 HETATM 3 C CAV DRQ . . . F 3 -32.662 -4.456 26.859 1 51.11 ? CAV DRQ 555 B 1 HETATM 4 C CAU DRQ . . . F 3 -32.219 -3.636 25.844 1 47.67 ? CAU DRQ 555 B 1 HETATM 5 C CAC DRQ . . . F 3 -31.833 -4.164 24.616 1 47.47 ? CAC DRQ 555 B 1 HETATM 6 C CAD DRQ . . . F 3 -32.735 -4.38 23.579 1 46.91 ? CAD DRQ 555 B 1 HETATM 7 C CAT DRQ . . . F 3 -32.286 -4.876 22.368 1 46.72 ? CAT DRQ 555 B 1 HETATM 8 C CAS DRQ . . . F 3 -33.276 -5.151 21.215 1 46.5 ? CAS DRQ 555 B 1 HETATM 9 C CAR DRQ . . . F 3 -34.505 -4.222 21.215 1 46.16 ? CAR DRQ 555 B 1 HETATM 10 C CAQ DRQ . . . F 3 -35.498 -4.564 20.065 1 45.6 ? CAQ DRQ 555 B 1 HETATM 11 C CAO DRQ . . . F 3 -34.774 -4.626 18.698 1 45.86 ? CAO DRQ 555 B 1 HETATM 12 C CAP DRQ . . . F 3 -34.323 -3.226 18.247 1 45.1 ? CAP DRQ 555 B 1 HETATM 13 C CAM DRQ . . . F 3 -35.534 -5.356 17.562 1 45.46 ? CAM DRQ 555 B 1 HETATM 14 O OAN DRQ . . . F 3 -36.629 -4.629 16.993 1 44.58 ? OAN DRQ 555 B 1 HETATM 15 C CAL DRQ . . . F 3 -34.413 -5.537 16.523 1 45.73 ? CAL DRQ 555 B 1 HETATM 16 C CAK DRQ . . . F 3 -33.105 -5.672 17.349 1 46.08 ? CAK DRQ 555 B 1 HETATM 17 C CAJ DRQ . . . F 3 -33.594 -5.597 18.806 1 46.21 ? CAJ DRQ 555 B 1 HETATM 18 C CAI DRQ . . . F 3 -32.568 -5.123 19.855 1 46.24 ? CAI DRQ 555 B 1 HETATM 19 C CAH DRQ . . . F 3 -31.343 -6.035 19.834 1 46.82 ? CAH DRQ 555 B 1 HETATM 20 C CAG DRQ . . . F 3 -30.314 -5.725 20.911 1 47.03 ? CAG DRQ 555 B 1 HETATM 21 C CAF DRQ . . . F 3 -30.928 -5.164 22.198 1 46.98 ? CAF DRQ 555 B 1 HETATM 22 C CAE DRQ . . . F 3 -30.035 -4.94 23.236 1 46.54 ? CAE DRQ 555 B 1 HETATM 23 C CAA DRQ . . . F 3 -30.488 -4.446 24.445 1 47.11 ? CAA DRQ 555 B 1 HETATM 24 O OAB DRQ . . . F 3 -29.635 -4.214 25.481 1 46.87 ? OAB DRQ 555 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #