data_2G5W # _model_server_result.job_id H9gokbi-vasvU31mW62AUw _model_server_result.datetime_utc '2024-11-05 19:40:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g5w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 2G5W # _exptl.entry_id 2G5W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G5W _cell.length_a 79.702 _cell.length_b 86.608 _cell.length_c 123.583 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G5W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 139 n n N1 C10 FMN doub 140 n n C2 O2 FMN doub 141 n n C2 N3 FMN sing 142 n n N3 C4 FMN sing 143 n n N3 HN3 FMN sing 144 n n C4 O4 FMN doub 145 n n C4 C4A FMN sing 146 n n C4A N5 FMN doub 147 n n C4A C10 FMN sing 148 n n N5 C5A FMN sing 149 n n C5A C6 FMN doub 150 n y C5A C9A FMN sing 151 n y C6 C7 FMN sing 152 n y C6 H6 FMN sing 153 n n C7 C7M FMN sing 154 n n C7 C8 FMN doub 155 n y C7M HM71 FMN sing 156 n n C7M HM72 FMN sing 157 n n C7M HM73 FMN sing 158 n n C8 C8M FMN sing 159 n n C8 C9 FMN sing 160 n y C8M HM81 FMN sing 161 n n C8M HM82 FMN sing 162 n n C8M HM83 FMN sing 163 n n C9 C9A FMN doub 164 n y C9 H9 FMN sing 165 n n C9A N10 FMN sing 166 n n N10 C10 FMN sing 167 n n N10 C1' FMN sing 168 n n C1' C2' FMN sing 169 n n C1' "H1'1" FMN sing 170 n n C1' "H1'2" FMN sing 171 n n C2' O2' FMN sing 172 n n C2' C3' FMN sing 173 n n C2' H2' FMN sing 174 n n O2' HO2' FMN sing 175 n n C3' O3' FMN sing 176 n n C3' C4' FMN sing 177 n n C3' H3' FMN sing 178 n n O3' HO3' FMN sing 179 n n C4' O4' FMN sing 180 n n C4' C5' FMN sing 181 n n C4' H4' FMN sing 182 n n O4' HO4' FMN sing 183 n n C5' O5' FMN sing 184 n n C5' "H5'1" FMN sing 185 n n C5' "H5'2" FMN sing 186 n n O5' P FMN sing 187 n n P O1P FMN doub 188 n n P O2P FMN sing 189 n n P O3P FMN sing 190 n n O2P HOP2 FMN sing 191 n n O3P HOP3 FMN sing 192 n n # _atom_sites.entry_id 2G5W _atom_sites.fract_transf_matrix[1][1] 0.01255 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01155 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 401 401 FMN FMN . D 3 8PG A 1 402 402 8PG 8PG . E 2 FMN B 1 403 403 FMN FMN . F 3 8PG B 1 404 404 8PG 8PG . G 4 HOH A 1 403 1 HOH HOH . G 4 HOH A 2 404 3 HOH HOH . G 4 HOH A 3 405 4 HOH HOH . G 4 HOH A 4 406 5 HOH HOH . G 4 HOH A 5 407 6 HOH HOH . G 4 HOH A 6 408 7 HOH HOH . G 4 HOH A 7 409 8 HOH HOH . G 4 HOH A 8 410 10 HOH HOH . G 4 HOH A 9 411 11 HOH HOH . G 4 HOH A 10 412 12 HOH HOH . G 4 HOH A 11 413 13 HOH HOH . G 4 HOH A 12 414 14 HOH HOH . G 4 HOH A 13 415 20 HOH HOH . G 4 HOH A 14 416 21 HOH HOH . G 4 HOH A 15 417 22 HOH HOH . G 4 HOH A 16 418 24 HOH HOH . G 4 HOH A 17 419 25 HOH HOH . G 4 HOH A 18 420 27 HOH HOH . G 4 HOH A 19 421 28 HOH HOH . G 4 HOH A 20 422 30 HOH HOH . G 4 HOH A 21 423 31 HOH HOH . G 4 HOH A 22 424 34 HOH HOH . G 4 HOH A 23 425 36 HOH HOH . G 4 HOH A 24 426 38 HOH HOH . G 4 HOH A 25 427 41 HOH HOH . G 4 HOH A 26 428 43 HOH HOH . G 4 HOH A 27 429 44 HOH HOH . G 4 HOH A 28 430 45 HOH HOH . G 4 HOH A 29 431 46 HOH HOH . G 4 HOH A 30 432 48 HOH HOH . G 4 HOH A 31 433 49 HOH HOH . G 4 HOH A 32 434 50 HOH HOH . G 4 HOH A 33 435 52 HOH HOH . G 4 HOH A 34 436 53 HOH HOH . G 4 HOH A 35 437 56 HOH HOH . G 4 HOH A 36 438 57 HOH HOH . G 4 HOH A 37 439 58 HOH HOH . G 4 HOH A 38 440 59 HOH HOH . G 4 HOH A 39 441 60 HOH HOH . G 4 HOH A 40 442 61 HOH HOH . G 4 HOH A 41 443 62 HOH HOH . G 4 HOH A 42 444 63 HOH HOH . G 4 HOH A 43 445 66 HOH HOH . G 4 HOH A 44 446 67 HOH HOH . G 4 HOH A 45 447 69 HOH HOH . G 4 HOH A 46 448 71 HOH HOH . G 4 HOH A 47 449 72 HOH HOH . G 4 HOH A 48 450 73 HOH HOH . G 4 HOH A 49 451 75 HOH HOH . G 4 HOH A 50 452 76 HOH HOH . G 4 HOH A 51 453 77 HOH HOH . G 4 HOH A 52 454 78 HOH HOH . G 4 HOH A 53 455 80 HOH HOH . G 4 HOH A 54 456 81 HOH HOH . G 4 HOH A 55 457 83 HOH HOH . G 4 HOH A 56 458 85 HOH HOH . G 4 HOH A 57 459 86 HOH HOH . G 4 HOH A 58 460 91 HOH HOH . G 4 HOH A 59 461 92 HOH HOH . G 4 HOH A 60 462 93 HOH HOH . G 4 HOH A 61 463 95 HOH HOH . G 4 HOH A 62 464 97 HOH HOH . G 4 HOH A 63 465 100 HOH HOH . G 4 HOH A 64 466 101 HOH HOH . G 4 HOH A 65 467 102 HOH HOH . G 4 HOH A 66 468 103 HOH HOH . G 4 HOH A 67 469 104 HOH HOH . G 4 HOH A 68 470 105 HOH HOH . G 4 HOH A 69 471 107 HOH HOH . G 4 HOH A 70 472 108 HOH HOH . H 4 HOH B 1 405 2 HOH HOH . H 4 HOH B 2 406 9 HOH HOH . H 4 HOH B 3 407 15 HOH HOH . H 4 HOH B 4 408 16 HOH HOH . H 4 HOH B 5 409 17 HOH HOH . H 4 HOH B 6 410 18 HOH HOH . H 4 HOH B 7 411 19 HOH HOH . H 4 HOH B 8 412 23 HOH HOH . H 4 HOH B 9 413 26 HOH HOH . H 4 HOH B 10 414 29 HOH HOH . H 4 HOH B 11 415 32 HOH HOH . H 4 HOH B 12 416 33 HOH HOH . H 4 HOH B 13 417 35 HOH HOH . H 4 HOH B 14 418 37 HOH HOH . H 4 HOH B 15 419 39 HOH HOH . H 4 HOH B 16 420 40 HOH HOH . H 4 HOH B 17 421 42 HOH HOH . H 4 HOH B 18 422 47 HOH HOH . H 4 HOH B 19 423 51 HOH HOH . H 4 HOH B 20 424 54 HOH HOH . H 4 HOH B 21 425 55 HOH HOH . H 4 HOH B 22 426 64 HOH HOH . H 4 HOH B 23 427 65 HOH HOH . H 4 HOH B 24 428 68 HOH HOH . H 4 HOH B 25 429 70 HOH HOH . H 4 HOH B 26 430 74 HOH HOH . H 4 HOH B 27 431 79 HOH HOH . H 4 HOH B 28 432 82 HOH HOH . H 4 HOH B 29 433 84 HOH HOH . H 4 HOH B 30 434 87 HOH HOH . H 4 HOH B 31 435 88 HOH HOH . H 4 HOH B 32 436 89 HOH HOH . H 4 HOH B 33 437 90 HOH HOH . H 4 HOH B 34 438 94 HOH HOH . H 4 HOH B 35 439 96 HOH HOH . H 4 HOH B 36 440 98 HOH HOH . H 4 HOH B 37 441 99 HOH HOH . H 4 HOH B 38 442 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 2 20.857 12.781 32.036 1 25.92 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . C 2 21.214 12.957 30.712 1 26.68 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . C 2 21.183 12.008 29.925 1 24.87 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . C 2 21.613 14.205 30.275 1 25.72 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . C 2 21.66 15.27 31.151 1 25.01 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . C 2 22.017 16.371 30.733 1 25.89 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . C 2 21.298 15.094 32.485 1 24.4 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . C 2 21.327 16.153 33.374 1 25.09 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . C 2 21.057 15.959 34.715 1 24.47 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . C 2 21.197 17.021 35.609 1 25.14 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . C 2 20.928 16.832 36.969 1 27.87 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . C 2 21.087 17.997 37.905 1 23.87 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . C 2 20.52 15.564 37.428 1 27.33 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . C 2 20.217 15.293 38.875 1 26.23 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . C 2 20.387 14.513 36.523 1 25.79 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . C 2 20.655 14.7 35.166 1 25.24 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . C 2 20.528 13.65 34.254 1 26.05 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . C 2 20.89 13.838 32.926 1 24.65 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . C 2 20.115 12.277 34.707 1 25.16 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . C 2 21.377 11.548 35.182 1 25.84 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . C 2 22.186 11.215 34.081 1 24.87 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . C 2 21.089 10.28 35.977 1 27.78 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . C 2 20.528 9.314 35.109 1 30.01 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . C 2 20.177 10.582 37.167 1 29.13 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . C 2 20.853 11.457 38.038 1 28.35 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . C 2 19.752 9.334 37.933 1 30.66 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . C 2 20.888 8.703 38.472 1 32.43 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . C 2 21.317 8.937 40.005 1 34.18 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . C 2 20.304 8.319 40.89 1 35.36 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . C 2 21.376 10.44 40.315 1 34.49 ? O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . C 2 22.694 8.287 40.247 1 32.4 ? O3P FMN 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #