data_2G5W # _model_server_result.job_id AmJtKm2LHp63VsVbY3Kx_Q _model_server_result.datetime_utc '2024-11-05 19:38:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g5w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 2G5W # _exptl.entry_id 2G5W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 336.466 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(8S,12S)-15S-HYDROXY-9-OXOPROSTA-10Z,13E-DIEN-1-OIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G5W _cell.length_a 79.702 _cell.length_b 86.608 _cell.length_c 123.583 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G5W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C20 H32 O4' _chem_comp.formula_weight 336.466 _chem_comp.id 8PG _chem_comp.mon_nstd_flag . _chem_comp.name '(8S,12S)-15S-HYDROXY-9-OXOPROSTA-10Z,13E-DIEN-1-OIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '8-ISO PROSTAGLANDIN A1 (8-ISO PGA1)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAJ 8PG sing 1 n n CAA HAA1 8PG sing 2 n n CAA HAA2 8PG sing 3 n n CAA HAA3 8PG sing 4 n n CAJ CAK 8PG sing 5 n n CAJ HAJ1 8PG sing 6 n n CAJ HAJ2 8PG sing 7 n n CAK CAO 8PG sing 8 n n CAK HAK1 8PG sing 9 n n CAK HAK2 8PG sing 10 n n CAO CAR 8PG sing 11 n n CAO HAO1 8PG sing 12 n n CAO HAO2 8PG sing 13 n n CAR CAV 8PG sing 14 n n CAR HAR1 8PG sing 15 n n CAR HAR2 8PG sing 16 n n CAV OAE 8PG sing 17 n n CAV CAH 8PG sing 18 n n CAV HAV 8PG sing 19 n n OAE HAE 8PG sing 20 n n CAH CAI 8PG doub 21 e n CAH HAH 8PG sing 22 n n CAI CAW 8PG sing 23 n n CAI HAI 8PG sing 24 n n CAW CAG 8PG sing 25 n n CAW CAX 8PG sing 26 n n CAW HAW 8PG sing 27 n n CAG CAF 8PG doub 28 n n CAG HAG 8PG sing 29 n n CAF CAU 8PG sing 30 n n CAF HAF 8PG sing 31 n n CAU OAC 8PG doub 32 n n CAU CAX 8PG sing 33 n n CAX CAS 8PG sing 34 n n CAX HAX 8PG sing 35 n n CAS CAP 8PG sing 36 n n CAS HAS1 8PG sing 37 n n CAS HAS2 8PG sing 38 n n CAP CAM 8PG sing 39 n n CAP HAP1 8PG sing 40 n n CAP HAP2 8PG sing 41 n n CAM CAL 8PG sing 42 n n CAM HAM1 8PG sing 43 n n CAM HAM2 8PG sing 44 n n CAL CAN 8PG sing 45 n n CAL HAL1 8PG sing 46 n n CAL HAL2 8PG sing 47 n n CAN CAQ 8PG sing 48 n n CAN HAN1 8PG sing 49 n n CAN HAN2 8PG sing 50 n n CAQ CAT 8PG sing 51 n n CAQ HAQ1 8PG sing 52 n n CAQ HAQ2 8PG sing 53 n n CAT OAD 8PG doub 54 n n CAT OAB 8PG sing 55 n n OAB HAB 8PG sing 56 n n # _atom_sites.entry_id 2G5W _atom_sites.fract_transf_matrix[1][1] 0.01255 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01155 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 401 401 FMN FMN . D 3 8PG A 1 402 402 8PG 8PG . E 2 FMN B 1 403 403 FMN FMN . F 3 8PG B 1 404 404 8PG 8PG . G 4 HOH A 1 403 1 HOH HOH . G 4 HOH A 2 404 3 HOH HOH . G 4 HOH A 3 405 4 HOH HOH . G 4 HOH A 4 406 5 HOH HOH . G 4 HOH A 5 407 6 HOH HOH . G 4 HOH A 6 408 7 HOH HOH . G 4 HOH A 7 409 8 HOH HOH . G 4 HOH A 8 410 10 HOH HOH . G 4 HOH A 9 411 11 HOH HOH . G 4 HOH A 10 412 12 HOH HOH . G 4 HOH A 11 413 13 HOH HOH . G 4 HOH A 12 414 14 HOH HOH . G 4 HOH A 13 415 20 HOH HOH . G 4 HOH A 14 416 21 HOH HOH . G 4 HOH A 15 417 22 HOH HOH . G 4 HOH A 16 418 24 HOH HOH . G 4 HOH A 17 419 25 HOH HOH . G 4 HOH A 18 420 27 HOH HOH . G 4 HOH A 19 421 28 HOH HOH . G 4 HOH A 20 422 30 HOH HOH . G 4 HOH A 21 423 31 HOH HOH . G 4 HOH A 22 424 34 HOH HOH . G 4 HOH A 23 425 36 HOH HOH . G 4 HOH A 24 426 38 HOH HOH . G 4 HOH A 25 427 41 HOH HOH . G 4 HOH A 26 428 43 HOH HOH . G 4 HOH A 27 429 44 HOH HOH . G 4 HOH A 28 430 45 HOH HOH . G 4 HOH A 29 431 46 HOH HOH . G 4 HOH A 30 432 48 HOH HOH . G 4 HOH A 31 433 49 HOH HOH . G 4 HOH A 32 434 50 HOH HOH . G 4 HOH A 33 435 52 HOH HOH . G 4 HOH A 34 436 53 HOH HOH . G 4 HOH A 35 437 56 HOH HOH . G 4 HOH A 36 438 57 HOH HOH . G 4 HOH A 37 439 58 HOH HOH . G 4 HOH A 38 440 59 HOH HOH . G 4 HOH A 39 441 60 HOH HOH . G 4 HOH A 40 442 61 HOH HOH . G 4 HOH A 41 443 62 HOH HOH . G 4 HOH A 42 444 63 HOH HOH . G 4 HOH A 43 445 66 HOH HOH . G 4 HOH A 44 446 67 HOH HOH . G 4 HOH A 45 447 69 HOH HOH . G 4 HOH A 46 448 71 HOH HOH . G 4 HOH A 47 449 72 HOH HOH . G 4 HOH A 48 450 73 HOH HOH . G 4 HOH A 49 451 75 HOH HOH . G 4 HOH A 50 452 76 HOH HOH . G 4 HOH A 51 453 77 HOH HOH . G 4 HOH A 52 454 78 HOH HOH . G 4 HOH A 53 455 80 HOH HOH . G 4 HOH A 54 456 81 HOH HOH . G 4 HOH A 55 457 83 HOH HOH . G 4 HOH A 56 458 85 HOH HOH . G 4 HOH A 57 459 86 HOH HOH . G 4 HOH A 58 460 91 HOH HOH . G 4 HOH A 59 461 92 HOH HOH . G 4 HOH A 60 462 93 HOH HOH . G 4 HOH A 61 463 95 HOH HOH . G 4 HOH A 62 464 97 HOH HOH . G 4 HOH A 63 465 100 HOH HOH . G 4 HOH A 64 466 101 HOH HOH . G 4 HOH A 65 467 102 HOH HOH . G 4 HOH A 66 468 103 HOH HOH . G 4 HOH A 67 469 104 HOH HOH . G 4 HOH A 68 470 105 HOH HOH . G 4 HOH A 69 471 107 HOH HOH . G 4 HOH A 70 472 108 HOH HOH . H 4 HOH B 1 405 2 HOH HOH . H 4 HOH B 2 406 9 HOH HOH . H 4 HOH B 3 407 15 HOH HOH . H 4 HOH B 4 408 16 HOH HOH . H 4 HOH B 5 409 17 HOH HOH . H 4 HOH B 6 410 18 HOH HOH . H 4 HOH B 7 411 19 HOH HOH . H 4 HOH B 8 412 23 HOH HOH . H 4 HOH B 9 413 26 HOH HOH . H 4 HOH B 10 414 29 HOH HOH . H 4 HOH B 11 415 32 HOH HOH . H 4 HOH B 12 416 33 HOH HOH . H 4 HOH B 13 417 35 HOH HOH . H 4 HOH B 14 418 37 HOH HOH . H 4 HOH B 15 419 39 HOH HOH . H 4 HOH B 16 420 40 HOH HOH . H 4 HOH B 17 421 42 HOH HOH . H 4 HOH B 18 422 47 HOH HOH . H 4 HOH B 19 423 51 HOH HOH . H 4 HOH B 20 424 54 HOH HOH . H 4 HOH B 21 425 55 HOH HOH . H 4 HOH B 22 426 64 HOH HOH . H 4 HOH B 23 427 65 HOH HOH . H 4 HOH B 24 428 68 HOH HOH . H 4 HOH B 25 429 70 HOH HOH . H 4 HOH B 26 430 74 HOH HOH . H 4 HOH B 27 431 79 HOH HOH . H 4 HOH B 28 432 82 HOH HOH . H 4 HOH B 29 433 84 HOH HOH . H 4 HOH B 30 434 87 HOH HOH . H 4 HOH B 31 435 88 HOH HOH . H 4 HOH B 32 436 89 HOH HOH . H 4 HOH B 33 437 90 HOH HOH . H 4 HOH B 34 438 94 HOH HOH . H 4 HOH B 35 439 96 HOH HOH . H 4 HOH B 36 440 98 HOH HOH . H 4 HOH B 37 441 99 HOH HOH . H 4 HOH B 38 442 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 8PG . . . D 3 15.744 19.35 42.556 1 66.37 ? CAA 8PG 402 A 1 HETATM 2 C CAJ 8PG . . . D 3 15.3 18.442 41.411 1 66.72 ? CAJ 8PG 402 A 1 HETATM 3 C CAK 8PG . . . D 3 15.253 19.222 40.092 1 65.34 ? CAK 8PG 402 A 1 HETATM 4 C CAO 8PG . . . D 3 14.846 18.318 38.925 1 64.24 ? CAO 8PG 402 A 1 HETATM 5 C CAR 8PG . . . D 3 16.067 17.697 38.237 1 62.09 ? CAR 8PG 402 A 1 HETATM 6 C CAV 8PG . . . D 3 15.703 16.357 37.591 1 59.45 ? CAV 8PG 402 A 1 HETATM 7 O OAE 8PG . . . D 3 16.675 15.366 37.948 1 61.42 ? OAE 8PG 402 A 1 HETATM 8 C CAH 8PG . . . D 3 15.635 16.51 36.066 1 58.26 ? CAH 8PG 402 A 1 HETATM 9 C CAI 8PG . . . D 3 16.765 16.421 35.252 1 55.92 ? CAI 8PG 402 A 1 HETATM 10 C CAW 8PG . . . D 3 16.594 16.585 33.728 1 55.57 ? CAW 8PG 402 A 1 HETATM 11 C CAG 8PG . . . D 3 17.724 17.426 33.121 1 53.22 ? CAG 8PG 402 A 1 HETATM 12 C CAF 8PG . . . D 3 18.365 16.752 32.164 1 52.3 ? CAF 8PG 402 A 1 HETATM 13 C CAU 8PG . . . D 3 17.865 15.527 32.009 1 53.61 ? CAU 8PG 402 A 1 HETATM 14 O OAC 8PG . . . D 3 18.294 14.721 31.182 1 53.49 ? OAC 8PG 402 A 1 HETATM 15 C CAX 8PG . . . D 3 16.694 15.254 32.96 1 54.26 ? CAX 8PG 402 A 1 HETATM 16 C CAS 8PG . . . D 3 16.978 14.032 33.858 1 53.94 ? CAS 8PG 402 A 1 HETATM 17 C CAP 8PG . . . D 3 15.777 13.078 33.893 1 54.15 ? CAP 8PG 402 A 1 HETATM 18 C CAM 8PG . . . D 3 15.498 12.515 35.294 1 55.59 ? CAM 8PG 402 A 1 HETATM 19 C CAL 8PG . . . D 3 14.248 11.62 35.268 1 58.05 ? CAL 8PG 402 A 1 HETATM 20 C CAN 8PG . . . D 3 13.814 11.16 36.669 1 60.68 ? CAN 8PG 402 A 1 HETATM 21 C CAQ 8PG . . . D 3 14.019 9.645 36.849 1 62.95 ? CAQ 8PG 402 A 1 HETATM 22 C CAT 8PG . . . D 3 12.983 9 37.788 1 64.02 ? CAT 8PG 402 A 1 HETATM 23 O OAD 8PG . . . D 3 13.381 8.643 38.922 1 63.52 ? OAD 8PG 402 A 1 HETATM 24 O OAB 8PG . . . D 3 11.819 8.864 37.346 1 64.61 ? OAB 8PG 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #