data_2G64 # _model_server_result.job_id PL1jC5tn-ND5oNUWbbQsXQ _model_server_result.datetime_utc '2025-02-26 17:45:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g64 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":3001}' # _entry.id 2G64 # _exptl.entry_id 2G64 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2G64 _cell.length_a 69.792 _cell.length_b 69.792 _cell.length_c 160.188 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G64 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 34.896 60.441645 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -34.896 60.441645 0 4 'crystal symmetry operation' 10_456 y-1/3,x+1/3,-z+4/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -34.896 20.147215 213.584 5 'crystal symmetry operation' 11_566 x-y+2/3,-y+4/3,-z+4/3 1 0 0 0 -1 0 0 0 -1 0 80.58886 213.584 6 'crystal symmetry operation' 12_556 -x+2/3,-x+y+1/3,-z+4/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 34.896 20.147215 213.584 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 19 A HIS 19 1_555 D ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc2 A O CYS 38 A CYS 38 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc3 A O ASN 40 A ASN 40 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc4 A ND1 HIS 44 A HIS 44 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.867 ? metalc ? metalc5 A NE2 HIS 44 A HIS 44 1_555 D ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc6 A NE2 HIS 46 A HIS 46 1_555 D ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc7 A O ASN 47 A ASN 47 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? metalc ? metalc8 B NA NA . A NA 1001 1_555 F O HOH . A HOH 3019 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc9 B NA NA . A NA 1001 1_555 F O HOH . A HOH 3117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc10 D ZN ZN . A ZN 2001 1_555 F O HOH . A HOH 3084 11_566 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc11 D ZN ZN . A ZN 2001 1_555 F O HOH . A HOH 3139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 110 n n C1 C2 GOL sing 111 n n C1 H11 GOL sing 112 n n C1 H12 GOL sing 113 n n O1 HO1 GOL sing 114 n n C2 O2 GOL sing 115 n n C2 C3 GOL sing 116 n n C2 H2 GOL sing 117 n n O2 HO2 GOL sing 118 n n C3 O3 GOL sing 119 n n C3 H31 GOL sing 120 n n C3 H32 GOL sing 121 n n O3 HO3 GOL sing 122 n n # _atom_sites.entry_id 2G64 _atom_sites.fract_transf_matrix[1][1] 0.014328 _atom_sites.fract_transf_matrix[1][2] 0.008272 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016545 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1001 1 NA NA . C 2 NA A 1 1002 2 NA NA . D 3 ZN A 1 2001 1 ZN ZN . E 4 GOL A 1 3001 1 GOL GOL . F 5 HOH A 1 3002 3 HOH HOH . F 5 HOH A 2 3003 4 HOH HOH . F 5 HOH A 3 3004 5 HOH HOH . F 5 HOH A 4 3005 6 HOH HOH . F 5 HOH A 5 3006 7 HOH HOH . F 5 HOH A 6 3007 8 HOH HOH . F 5 HOH A 7 3008 9 HOH HOH . F 5 HOH A 8 3009 10 HOH HOH . F 5 HOH A 9 3010 12 HOH HOH . F 5 HOH A 10 3011 13 HOH HOH . F 5 HOH A 11 3012 14 HOH HOH . F 5 HOH A 12 3013 15 HOH HOH . F 5 HOH A 13 3014 16 HOH HOH . F 5 HOH A 14 3015 18 HOH HOH . F 5 HOH A 15 3016 19 HOH HOH . F 5 HOH A 16 3017 20 HOH HOH . F 5 HOH A 17 3018 21 HOH HOH . F 5 HOH A 18 3019 22 HOH HOH . F 5 HOH A 19 3020 23 HOH HOH . F 5 HOH A 20 3021 24 HOH HOH . F 5 HOH A 21 3022 25 HOH HOH . F 5 HOH A 22 3023 26 HOH HOH . F 5 HOH A 23 3024 27 HOH HOH . F 5 HOH A 24 3025 28 HOH HOH . F 5 HOH A 25 3026 29 HOH HOH . F 5 HOH A 26 3027 30 HOH HOH . F 5 HOH A 27 3028 31 HOH HOH . F 5 HOH A 28 3029 32 HOH HOH . F 5 HOH A 29 3030 33 HOH HOH . F 5 HOH A 30 3031 34 HOH HOH . F 5 HOH A 31 3032 35 HOH HOH . F 5 HOH A 32 3033 36 HOH HOH . F 5 HOH A 33 3034 38 HOH HOH . F 5 HOH A 34 3035 39 HOH HOH . F 5 HOH A 35 3036 40 HOH HOH . F 5 HOH A 36 3037 42 HOH HOH . F 5 HOH A 37 3038 43 HOH HOH . F 5 HOH A 38 3039 44 HOH HOH . F 5 HOH A 39 3040 45 HOH HOH . F 5 HOH A 40 3041 46 HOH HOH . F 5 HOH A 41 3042 47 HOH HOH . F 5 HOH A 42 3043 49 HOH HOH . F 5 HOH A 43 3044 50 HOH HOH . F 5 HOH A 44 3045 51 HOH HOH . F 5 HOH A 45 3046 52 HOH HOH . F 5 HOH A 46 3047 53 HOH HOH . F 5 HOH A 47 3048 54 HOH HOH . F 5 HOH A 48 3049 56 HOH HOH . F 5 HOH A 49 3050 57 HOH HOH . F 5 HOH A 50 3051 58 HOH HOH . F 5 HOH A 51 3052 59 HOH HOH . F 5 HOH A 52 3053 60 HOH HOH . F 5 HOH A 53 3054 61 HOH HOH . F 5 HOH A 54 3055 62 HOH HOH . F 5 HOH A 55 3056 63 HOH HOH . F 5 HOH A 56 3057 64 HOH HOH . F 5 HOH A 57 3058 65 HOH HOH . F 5 HOH A 58 3059 67 HOH HOH . F 5 HOH A 59 3060 69 HOH HOH . F 5 HOH A 60 3061 70 HOH HOH . F 5 HOH A 61 3062 71 HOH HOH . F 5 HOH A 62 3063 72 HOH HOH . F 5 HOH A 63 3064 73 HOH HOH . F 5 HOH A 64 3065 74 HOH HOH . F 5 HOH A 65 3066 75 HOH HOH . F 5 HOH A 66 3067 76 HOH HOH . F 5 HOH A 67 3068 77 HOH HOH . F 5 HOH A 68 3069 78 HOH HOH . F 5 HOH A 69 3070 79 HOH HOH . F 5 HOH A 70 3071 80 HOH HOH . F 5 HOH A 71 3072 81 HOH HOH . F 5 HOH A 72 3073 83 HOH HOH . F 5 HOH A 73 3074 84 HOH HOH . F 5 HOH A 74 3075 85 HOH HOH . F 5 HOH A 75 3076 86 HOH HOH . F 5 HOH A 76 3077 91 HOH HOH . F 5 HOH A 77 3078 93 HOH HOH . F 5 HOH A 78 3079 94 HOH HOH . F 5 HOH A 79 3080 95 HOH HOH . F 5 HOH A 80 3081 96 HOH HOH . F 5 HOH A 81 3082 97 HOH HOH . F 5 HOH A 82 3083 98 HOH HOH . F 5 HOH A 83 3084 99 HOH HOH . F 5 HOH A 84 3085 100 HOH HOH . F 5 HOH A 85 3086 101 HOH HOH . F 5 HOH A 86 3087 102 HOH HOH . F 5 HOH A 87 3088 103 HOH HOH . F 5 HOH A 88 3089 104 HOH HOH . F 5 HOH A 89 3090 105 HOH HOH . F 5 HOH A 90 3091 106 HOH HOH . F 5 HOH A 91 3092 107 HOH HOH . F 5 HOH A 92 3093 108 HOH HOH . F 5 HOH A 93 3094 109 HOH HOH . F 5 HOH A 94 3095 110 HOH HOH . F 5 HOH A 95 3096 111 HOH HOH . F 5 HOH A 96 3097 112 HOH HOH . F 5 HOH A 97 3098 113 HOH HOH . F 5 HOH A 98 3099 114 HOH HOH . F 5 HOH A 99 3100 115 HOH HOH . F 5 HOH A 100 3101 116 HOH HOH . F 5 HOH A 101 3102 117 HOH HOH . F 5 HOH A 102 3103 118 HOH HOH . F 5 HOH A 103 3104 119 HOH HOH . F 5 HOH A 104 3105 120 HOH HOH . F 5 HOH A 105 3106 121 HOH HOH . F 5 HOH A 106 3107 122 HOH HOH . F 5 HOH A 107 3108 124 HOH HOH . F 5 HOH A 108 3109 125 HOH HOH . F 5 HOH A 109 3110 126 HOH HOH . F 5 HOH A 110 3111 127 HOH HOH . F 5 HOH A 111 3112 128 HOH HOH . F 5 HOH A 112 3113 129 HOH HOH . F 5 HOH A 113 3114 130 HOH HOH . F 5 HOH A 114 3115 131 HOH HOH . F 5 HOH A 115 3116 136 HOH HOH . F 5 HOH A 116 3117 138 HOH HOH . F 5 HOH A 117 3118 139 HOH HOH . F 5 HOH A 118 3119 2 HOH HOH . F 5 HOH A 119 3120 3 HOH HOH . F 5 HOH A 120 3121 4 HOH HOH . F 5 HOH A 121 3122 5 HOH HOH . F 5 HOH A 122 3123 6 HOH HOH . F 5 HOH A 123 3124 7 HOH HOH . F 5 HOH A 124 3125 8 HOH HOH . F 5 HOH A 125 3126 9 HOH HOH . F 5 HOH A 126 3127 10 HOH HOH . F 5 HOH A 127 3128 11 HOH HOH . F 5 HOH A 128 3129 12 HOH HOH . F 5 HOH A 129 3130 13 HOH HOH . F 5 HOH A 130 3131 14 HOH HOH . F 5 HOH A 131 3132 15 HOH HOH . F 5 HOH A 132 3133 16 HOH HOH . F 5 HOH A 133 3134 17 HOH HOH . F 5 HOH A 134 3135 18 HOH HOH . F 5 HOH A 135 3136 19 HOH HOH . F 5 HOH A 136 3137 20 HOH HOH . F 5 HOH A 137 3138 21 HOH HOH . F 5 HOH A 138 3139 22 HOH HOH . F 5 HOH A 139 3140 23 HOH HOH . F 5 HOH A 140 3141 24 HOH HOH . F 5 HOH A 141 3142 25 HOH HOH . F 5 HOH A 142 3143 26 HOH HOH . F 5 HOH A 143 3144 27 HOH HOH . F 5 HOH A 144 3145 28 HOH HOH . F 5 HOH A 145 3146 29 HOH HOH . F 5 HOH A 146 3147 30 HOH HOH . F 5 HOH A 147 3148 31 HOH HOH . F 5 HOH A 148 3149 32 HOH HOH . F 5 HOH A 149 3150 33 HOH HOH . F 5 HOH A 150 3151 34 HOH HOH . F 5 HOH A 151 3152 35 HOH HOH . F 5 HOH A 152 3153 36 HOH HOH . F 5 HOH A 153 3154 37 HOH HOH . F 5 HOH A 154 3155 38 HOH HOH . F 5 HOH A 155 3156 39 HOH HOH . F 5 HOH A 156 3157 40 HOH HOH . F 5 HOH A 157 3158 41 HOH HOH . F 5 HOH A 158 3159 42 HOH HOH . F 5 HOH A 159 3160 43 HOH HOH . F 5 HOH A 160 3161 44 HOH HOH . F 5 HOH A 161 3162 45 HOH HOH . F 5 HOH A 162 3163 46 HOH HOH . F 5 HOH A 163 3164 47 HOH HOH . F 5 HOH A 164 3165 48 HOH HOH . F 5 HOH A 165 3166 49 HOH HOH . F 5 HOH A 166 3167 50 HOH HOH . F 5 HOH A 167 3168 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 1.591 37.461 87.567 1 29.28 ? C1 GOL 3001 A 1 HETATM 2 O O1 GOL . . . E 4 2.662 36.728 88.042 1 29.91 ? O1 GOL 3001 A 1 HETATM 3 C C2 GOL . . . E 4 1.967 37.985 86.222 1 27.22 ? C2 GOL 3001 A 1 HETATM 4 O O2 GOL . . . E 4 1.107 37.352 85.311 1 47.61 ? O2 GOL 3001 A 1 HETATM 5 C C3 GOL . . . E 4 1.746 39.485 86.278 1 66.65 ? C3 GOL 3001 A 1 HETATM 6 O O3 GOL . . . E 4 2.944 40.21 86.112 1 38.37 ? O3 GOL 3001 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #