data_2G6B # _model_server_result.job_id QIMYuQtTUxEqZ3cD0pip0w _model_server_result.datetime_utc '2024-11-04 22:15:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g6b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 2G6B # _exptl.entry_id 2G6B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G6B _cell.length_a 34.368 _cell.length_b 55.614 _cell.length_c 92.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G6B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 24 A THR 77 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc2 A OG1 THR 43 A THR 96 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc3 B MG MG . A MG 301 1_555 C O2G GNP . A GNP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc4 B MG MG . A MG 301 1_555 C O2B GNP . A GNP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc5 B MG MG . A MG 301 1_555 H O HOH . A HOH 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc6 B MG MG . A MG 301 1_555 H O HOH . A HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 2G6B _atom_sites.fract_transf_matrix[1][1] 0.0291 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01083 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 301 MG MG . C 3 GNP A 1 302 302 GNP GNP . D 4 UNX A 1 501 501 UNX UNX . E 4 UNX A 1 502 502 UNX UNX . F 4 UNX A 1 503 503 UNX UNX . G 4 UNX A 1 504 504 UNX UNX . H 5 HOH A 1 401 401 HOH HOH . H 5 HOH A 2 402 402 HOH HOH . H 5 HOH A 3 403 403 HOH HOH . H 5 HOH A 4 404 404 HOH HOH . H 5 HOH A 5 405 405 HOH HOH . H 5 HOH A 6 406 406 HOH HOH . H 5 HOH A 7 407 407 HOH HOH . H 5 HOH A 8 408 408 HOH HOH . H 5 HOH A 9 409 409 HOH HOH . H 5 HOH A 10 410 410 HOH HOH . H 5 HOH A 11 411 411 HOH HOH . H 5 HOH A 12 412 412 HOH HOH . H 5 HOH A 13 413 413 HOH HOH . H 5 HOH A 14 414 414 HOH HOH . H 5 HOH A 15 415 415 HOH HOH . H 5 HOH A 16 416 416 HOH HOH . H 5 HOH A 17 417 417 HOH HOH . H 5 HOH A 18 418 418 HOH HOH . H 5 HOH A 19 419 419 HOH HOH . H 5 HOH A 20 420 420 HOH HOH . H 5 HOH A 21 421 421 HOH HOH . H 5 HOH A 22 422 422 HOH HOH . H 5 HOH A 23 423 423 HOH HOH . H 5 HOH A 24 424 424 HOH HOH . H 5 HOH A 25 425 425 HOH HOH . H 5 HOH A 26 426 426 HOH HOH . H 5 HOH A 27 427 427 HOH HOH . H 5 HOH A 28 428 428 HOH HOH . H 5 HOH A 29 429 429 HOH HOH . H 5 HOH A 30 430 430 HOH HOH . H 5 HOH A 31 431 431 HOH HOH . H 5 HOH A 32 432 432 HOH HOH . H 5 HOH A 33 433 433 HOH HOH . H 5 HOH A 34 434 434 HOH HOH . H 5 HOH A 35 435 435 HOH HOH . H 5 HOH A 36 436 436 HOH HOH . H 5 HOH A 37 437 437 HOH HOH . H 5 HOH A 38 438 438 HOH HOH . H 5 HOH A 39 439 439 HOH HOH . H 5 HOH A 40 440 440 HOH HOH . H 5 HOH A 41 441 441 HOH HOH . H 5 HOH A 42 442 442 HOH HOH . H 5 HOH A 43 443 443 HOH HOH . H 5 HOH A 44 444 444 HOH HOH . H 5 HOH A 45 445 445 HOH HOH . H 5 HOH A 46 446 446 HOH HOH . H 5 HOH A 47 447 447 HOH HOH . H 5 HOH A 48 448 448 HOH HOH . H 5 HOH A 49 449 449 HOH HOH . H 5 HOH A 50 450 450 HOH HOH . H 5 HOH A 51 451 451 HOH HOH . H 5 HOH A 52 452 452 HOH HOH . H 5 HOH A 53 453 453 HOH HOH . H 5 HOH A 54 454 454 HOH HOH . H 5 HOH A 55 455 455 HOH HOH . H 5 HOH A 56 456 456 HOH HOH . H 5 HOH A 57 457 457 HOH HOH . H 5 HOH A 58 458 458 HOH HOH . H 5 HOH A 59 459 459 HOH HOH . H 5 HOH A 60 460 460 HOH HOH . H 5 HOH A 61 461 461 HOH HOH . H 5 HOH A 62 462 462 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . C 3 12.14 18.257 15.536 1 18.71 ? PG GNP 302 A 1 HETATM 2 O O1G GNP . . . C 3 13.141 19.211 16.139 1 21.66 ? O1G GNP 302 A 1 HETATM 3 O O2G GNP . . . C 3 12.545 17.865 14.121 1 19.75 ? O2G GNP 302 A 1 HETATM 4 O O3G GNP . . . C 3 10.732 18.835 15.641 1 17.84 ? O3G GNP 302 A 1 HETATM 5 N N3B GNP . . . C 3 12.258 16.936 16.488 1 16.49 ? N3B GNP 302 A 1 HETATM 6 P PB GNP . . . C 3 11.474 15.535 16.291 1 15.38 ? PB GNP 302 A 1 HETATM 7 O O1B GNP . . . C 3 10.125 15.633 16.893 1 16.42 ? O1B GNP 302 A 1 HETATM 8 O O2B GNP . . . C 3 11.573 15.092 14.895 1 15.22 ? O2B GNP 302 A 1 HETATM 9 O O3A GNP . . . C 3 12.249 14.472 17.117 1 19.12 ? O3A GNP 302 A 1 HETATM 10 P PA GNP . . . C 3 13.303 13.389 16.629 1 16.76 ? PA GNP 302 A 1 HETATM 11 O O1A GNP . . . C 3 12.646 12.283 15.947 1 15.96 ? O1A GNP 302 A 1 HETATM 12 O O2A GNP . . . C 3 14.462 14.064 15.991 1 16.97 ? O2A GNP 302 A 1 HETATM 13 O O5' GNP . . . C 3 13.788 12.744 17.956 1 15.46 ? O5' GNP 302 A 1 HETATM 14 C C5' GNP . . . C 3 14.299 13.546 19.05 1 14.71 ? C5' GNP 302 A 1 HETATM 15 C C4' GNP . . . C 3 15.281 12.779 19.923 1 17.42 ? C4' GNP 302 A 1 HETATM 16 O O4' GNP . . . C 3 14.577 11.754 20.687 1 17.5 ? O4' GNP 302 A 1 HETATM 17 C C3' GNP . . . C 3 16.373 12.028 19.168 1 20.85 ? C3' GNP 302 A 1 HETATM 18 O O3' GNP . . . C 3 17.578 11.952 19.938 1 20.55 ? O3' GNP 302 A 1 HETATM 19 C C2' GNP . . . C 3 15.758 10.646 18.952 1 19.93 ? C2' GNP 302 A 1 HETATM 20 O O2' GNP . . . C 3 16.703 9.611 18.811 1 21.7 ? O2' GNP 302 A 1 HETATM 21 C C1' GNP . . . C 3 15.015 10.471 20.249 1 18.39 ? C1' GNP 302 A 1 HETATM 22 N N9 GNP . . . C 3 13.793 9.691 20.154 1 20.02 ? N9 GNP 302 A 1 HETATM 23 C C8 GNP . . . C 3 12.763 9.861 19.266 1 18.95 ? C8 GNP 302 A 1 HETATM 24 N N7 GNP . . . C 3 11.784 9.057 19.454 1 19.92 ? N7 GNP 302 A 1 HETATM 25 C C5 GNP . . . C 3 12.185 8.331 20.571 1 21.14 ? C5 GNP 302 A 1 HETATM 26 C C6 GNP . . . C 3 11.518 7.295 21.248 1 17.65 ? C6 GNP 302 A 1 HETATM 27 O O6 GNP . . . C 3 10.418 6.783 21.001 1 16.9 ? O6 GNP 302 A 1 HETATM 28 N N1 GNP . . . C 3 12.284 6.831 22.296 1 21.21 ? N1 GNP 302 A 1 HETATM 29 C C2 GNP . . . C 3 13.516 7.291 22.665 1 19.3 ? C2 GNP 302 A 1 HETATM 30 N N2 GNP . . . C 3 14.035 6.685 23.715 1 20.98 ? N2 GNP 302 A 1 HETATM 31 N N3 GNP . . . C 3 14.17 8.252 22.049 1 18.19 ? N3 GNP 302 A 1 HETATM 32 C C4 GNP . . . C 3 13.423 8.718 21.014 1 19.24 ? C4 GNP 302 A 1 # _model_server_stats.io_time_ms 88 _model_server_stats.parse_time_ms 79 _model_server_stats.create_model_time_ms 57 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #