data_2G6W # _model_server_result.job_id VY-JZUyZtEXeH2Se3I9j_Q _model_server_result.datetime_utc '2025-03-06 01:59:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g6w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":436}' # _entry.id 2G6W # _exptl.entry_id 2G6W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 310.191 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4-{(E)-[(2,2-DIFLUOROETHYL)IMINO]METHYL}-5-HYDROXY-6-METHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2G6W _cell.length_a 58.67 _cell.length_b 58.67 _cell.length_c 198.97 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G6W _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 1 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 -x+y,y,-z+1/3 -1 0 0 0 1 0 0 0 -1 0 0 66.323333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 236 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 236 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CBF _struct_conn.ptnr2_label_comp_id LLF _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id LLF _struct_conn.ptnr2_auth_seq_id 436 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.511 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H13 F2 N2 O5 P' _chem_comp.formula_weight 310.191 _chem_comp.id LLF _chem_comp.mon_nstd_flag . _chem_comp.name '(4-{(E)-[(2,2-DIFLUOROETHYL)IMINO]METHYL}-5-HYDROXY-6-METHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "(E)-N-(2,2-DIFLUOROETHYL)PYRIDOXIMINE-5'-PHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBF CAF LLF sing 194 n n CBF F1 LLF sing 195 n n CBF F2 LLF sing 196 n n CBF HBF LLF sing 197 n n CAF NF LLF sing 198 n n CAF HAF1 LLF sing 199 n n CAF HAF2 LLF sing 200 n n NF C4A LLF doub 201 n n C4A C4 LLF sing 202 n n C4A H4A LLF sing 203 n n C4 C3 LLF doub 204 n y C4 C5 LLF sing 205 n y C3 O3 LLF sing 206 n n C3 C2 LLF sing 207 n y O3 HO3 LLF sing 208 n n C2 C2A LLF sing 209 n n C2 N1 LLF doub 210 n y C2A H2A1 LLF sing 211 n n C2A H2A2 LLF sing 212 n n C2A H2A3 LLF sing 213 n n N1 C6 LLF sing 214 n y C5 C6 LLF doub 215 n y C5 C5M LLF sing 216 n n C6 H6 LLF sing 217 n n C5M O4P LLF sing 218 n n C5M H5M1 LLF sing 219 n n C5M H5M2 LLF sing 220 n n O4P P LLF sing 221 n n P OP1 LLF sing 222 n n P OP2 LLF sing 223 n n P OP3 LLF doub 224 n n OP1 HP1 LLF sing 225 n n OP2 HP2 LLF sing 226 n n # _atom_sites.entry_id 2G6W _atom_sites.fract_transf_matrix[1][1] 0.017044 _atom_sites.fract_transf_matrix[1][2] 0.009841 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019681 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LLF A 1 436 436 LLF LLF . C 3 HOH A 1 437 1 HOH HOH . C 3 HOH A 2 438 2 HOH HOH . C 3 HOH A 3 439 3 HOH HOH . C 3 HOH A 4 440 4 HOH HOH . C 3 HOH A 5 441 6 HOH HOH . C 3 HOH A 6 442 7 HOH HOH . C 3 HOH A 7 443 8 HOH HOH . C 3 HOH A 8 444 9 HOH HOH . C 3 HOH A 9 445 10 HOH HOH . C 3 HOH A 10 446 11 HOH HOH . C 3 HOH A 11 447 12 HOH HOH . C 3 HOH A 12 448 13 HOH HOH . C 3 HOH A 13 449 14 HOH HOH . C 3 HOH A 14 450 15 HOH HOH . C 3 HOH A 15 451 16 HOH HOH . C 3 HOH A 16 452 17 HOH HOH . C 3 HOH A 17 453 18 HOH HOH . C 3 HOH A 18 454 19 HOH HOH . C 3 HOH A 19 455 20 HOH HOH . C 3 HOH A 20 456 21 HOH HOH . C 3 HOH A 21 457 22 HOH HOH . C 3 HOH A 22 458 23 HOH HOH . C 3 HOH A 23 459 24 HOH HOH . C 3 HOH A 24 460 25 HOH HOH . C 3 HOH A 25 461 26 HOH HOH . C 3 HOH A 26 462 27 HOH HOH . C 3 HOH A 27 463 28 HOH HOH . C 3 HOH A 28 464 29 HOH HOH . C 3 HOH A 29 465 30 HOH HOH . C 3 HOH A 30 466 31 HOH HOH . C 3 HOH A 31 467 32 HOH HOH . C 3 HOH A 32 468 33 HOH HOH . C 3 HOH A 33 469 34 HOH HOH . C 3 HOH A 34 470 35 HOH HOH . C 3 HOH A 35 471 36 HOH HOH . C 3 HOH A 36 472 37 HOH HOH . C 3 HOH A 37 473 38 HOH HOH . C 3 HOH A 38 474 39 HOH HOH . C 3 HOH A 39 475 40 HOH HOH . C 3 HOH A 40 476 41 HOH HOH . C 3 HOH A 41 477 42 HOH HOH . C 3 HOH A 42 478 43 HOH HOH . C 3 HOH A 43 479 44 HOH HOH . C 3 HOH A 44 480 45 HOH HOH . C 3 HOH A 45 481 46 HOH HOH . C 3 HOH A 46 482 47 HOH HOH . C 3 HOH A 47 483 48 HOH HOH . C 3 HOH A 48 484 49 HOH HOH . C 3 HOH A 49 485 50 HOH HOH . C 3 HOH A 50 486 51 HOH HOH . C 3 HOH A 51 487 52 HOH HOH . C 3 HOH A 52 488 53 HOH HOH . C 3 HOH A 53 489 54 HOH HOH . C 3 HOH A 54 490 55 HOH HOH . C 3 HOH A 55 491 56 HOH HOH . C 3 HOH A 56 492 57 HOH HOH . C 3 HOH A 57 493 58 HOH HOH . C 3 HOH A 58 494 59 HOH HOH . C 3 HOH A 59 495 60 HOH HOH . C 3 HOH A 60 496 61 HOH HOH . C 3 HOH A 61 497 62 HOH HOH . C 3 HOH A 62 498 63 HOH HOH . C 3 HOH A 63 499 64 HOH HOH . C 3 HOH A 64 500 66 HOH HOH . C 3 HOH A 65 501 67 HOH HOH . C 3 HOH A 66 502 68 HOH HOH . C 3 HOH A 67 503 69 HOH HOH . C 3 HOH A 68 504 70 HOH HOH . C 3 HOH A 69 505 71 HOH HOH . C 3 HOH A 70 506 72 HOH HOH . C 3 HOH A 71 507 73 HOH HOH . C 3 HOH A 72 508 74 HOH HOH . C 3 HOH A 73 509 75 HOH HOH . C 3 HOH A 74 510 76 HOH HOH . C 3 HOH A 75 511 78 HOH HOH . C 3 HOH A 76 512 79 HOH HOH . C 3 HOH A 77 513 80 HOH HOH . C 3 HOH A 78 514 81 HOH HOH . C 3 HOH A 79 515 82 HOH HOH . C 3 HOH A 80 516 83 HOH HOH . C 3 HOH A 81 517 84 HOH HOH . C 3 HOH A 82 518 85 HOH HOH . C 3 HOH A 83 519 86 HOH HOH . C 3 HOH A 84 520 87 HOH HOH . C 3 HOH A 85 521 88 HOH HOH . C 3 HOH A 86 522 89 HOH HOH . C 3 HOH A 87 523 90 HOH HOH . C 3 HOH A 88 524 91 HOH HOH . C 3 HOH A 89 525 92 HOH HOH . C 3 HOH A 90 526 93 HOH HOH . C 3 HOH A 91 527 95 HOH HOH . C 3 HOH A 92 528 96 HOH HOH . C 3 HOH A 93 529 97 HOH HOH . C 3 HOH A 94 530 98 HOH HOH . C 3 HOH A 95 531 99 HOH HOH . C 3 HOH A 96 532 100 HOH HOH . C 3 HOH A 97 533 102 HOH HOH . C 3 HOH A 98 534 103 HOH HOH . C 3 HOH A 99 535 104 HOH HOH . C 3 HOH A 100 536 105 HOH HOH . C 3 HOH A 101 537 106 HOH HOH . C 3 HOH A 102 538 108 HOH HOH . C 3 HOH A 103 539 109 HOH HOH . C 3 HOH A 104 540 110 HOH HOH . C 3 HOH A 105 541 111 HOH HOH . C 3 HOH A 106 542 112 HOH HOH . C 3 HOH A 107 543 113 HOH HOH . C 3 HOH A 108 544 114 HOH HOH . C 3 HOH A 109 545 115 HOH HOH . C 3 HOH A 110 546 116 HOH HOH . C 3 HOH A 111 547 117 HOH HOH . C 3 HOH A 112 548 118 HOH HOH . C 3 HOH A 113 549 119 HOH HOH . C 3 HOH A 114 550 125 HOH HOH . C 3 HOH A 115 551 126 HOH HOH . C 3 HOH A 116 552 127 HOH HOH . C 3 HOH A 117 553 128 HOH HOH . C 3 HOH A 118 554 129 HOH HOH . C 3 HOH A 119 555 131 HOH HOH . C 3 HOH A 120 556 132 HOH HOH . C 3 HOH A 121 557 133 HOH HOH . C 3 HOH A 122 558 134 HOH HOH . C 3 HOH A 123 559 135 HOH HOH . C 3 HOH A 124 560 136 HOH HOH . C 3 HOH A 125 561 137 HOH HOH . C 3 HOH A 126 562 138 HOH HOH . C 3 HOH A 127 563 140 HOH HOH . C 3 HOH A 128 564 141 HOH HOH . C 3 HOH A 129 565 142 HOH HOH . C 3 HOH A 130 566 143 HOH HOH . C 3 HOH A 131 567 144 HOH HOH . C 3 HOH A 132 568 145 HOH HOH . C 3 HOH A 133 569 147 HOH HOH . C 3 HOH A 134 570 148 HOH HOH . C 3 HOH A 135 571 151 HOH HOH . C 3 HOH A 136 572 153 HOH HOH . C 3 HOH A 137 573 155 HOH HOH . C 3 HOH A 138 574 156 HOH HOH . C 3 HOH A 139 575 157 HOH HOH . C 3 HOH A 140 576 158 HOH HOH . C 3 HOH A 141 577 159 HOH HOH . C 3 HOH A 142 578 162 HOH HOH . C 3 HOH A 143 579 164 HOH HOH . C 3 HOH A 144 580 165 HOH HOH . C 3 HOH A 145 581 166 HOH HOH . C 3 HOH A 146 582 167 HOH HOH . C 3 HOH A 147 583 168 HOH HOH . C 3 HOH A 148 584 169 HOH HOH . C 3 HOH A 149 585 172 HOH HOH . C 3 HOH A 150 586 175 HOH HOH . C 3 HOH A 151 587 176 HOH HOH . C 3 HOH A 152 588 178 HOH HOH . C 3 HOH A 153 589 179 HOH HOH . C 3 HOH A 154 590 180 HOH HOH . C 3 HOH A 155 591 182 HOH HOH . C 3 HOH A 156 592 186 HOH HOH . C 3 HOH A 157 593 187 HOH HOH . C 3 HOH A 158 594 188 HOH HOH . C 3 HOH A 159 595 189 HOH HOH . C 3 HOH A 160 596 190 HOH HOH . C 3 HOH A 161 597 194 HOH HOH . C 3 HOH A 162 598 196 HOH HOH . C 3 HOH A 163 599 197 HOH HOH . C 3 HOH A 164 600 198 HOH HOH . C 3 HOH A 165 601 200 HOH HOH . C 3 HOH A 166 602 201 HOH HOH . C 3 HOH A 167 603 203 HOH HOH . C 3 HOH A 168 604 204 HOH HOH . C 3 HOH A 169 605 205 HOH HOH . C 3 HOH A 170 606 206 HOH HOH . C 3 HOH A 171 607 207 HOH HOH . C 3 HOH A 172 608 208 HOH HOH . C 3 HOH A 173 609 209 HOH HOH . C 3 HOH A 174 610 210 HOH HOH . C 3 HOH A 175 611 213 HOH HOH . C 3 HOH A 176 612 214 HOH HOH . C 3 HOH A 177 613 217 HOH HOH . C 3 HOH A 178 614 218 HOH HOH . C 3 HOH A 179 615 221 HOH HOH . C 3 HOH A 180 616 223 HOH HOH . C 3 HOH A 181 617 225 HOH HOH . C 3 HOH A 182 618 228 HOH HOH . C 3 HOH A 183 619 229 HOH HOH . C 3 HOH A 184 620 230 HOH HOH . C 3 HOH A 185 621 233 HOH HOH . C 3 HOH A 186 622 234 HOH HOH . C 3 HOH A 187 623 238 HOH HOH . C 3 HOH A 188 624 241 HOH HOH . C 3 HOH A 189 625 244 HOH HOH . C 3 HOH A 190 626 245 HOH HOH . C 3 HOH A 191 627 249 HOH HOH . C 3 HOH A 192 628 250 HOH HOH . C 3 HOH A 193 629 253 HOH HOH . C 3 HOH A 194 630 254 HOH HOH . C 3 HOH A 195 631 255 HOH HOH . C 3 HOH A 196 632 257 HOH HOH . C 3 HOH A 197 633 260 HOH HOH . C 3 HOH A 198 634 261 HOH HOH . C 3 HOH A 199 635 264 HOH HOH . C 3 HOH A 200 636 265 HOH HOH . C 3 HOH A 201 637 270 HOH HOH . C 3 HOH A 202 638 273 HOH HOH . C 3 HOH A 203 639 274 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBF LLF . . . B 2 8.792 -3.037 42.849 1 51.68 ? CBF LLF 436 A 1 HETATM 2 C CAF LLF . . . B 2 8.449 -1.846 41.925 1 52.17 ? CAF LLF 436 A 1 HETATM 3 F F1 LLF . . . B 2 9.574 -3.871 41.972 1 51.74 ? F1 LLF 436 A 1 HETATM 4 F F2 LLF . . . B 2 9.661 -2.572 43.943 1 52.99 ? F2 LLF 436 A 1 HETATM 5 N NF LLF . . . B 2 8.005 -0.772 42.782 1 52.02 ? NF LLF 436 A 1 HETATM 6 C C4A LLF . . . B 2 6.753 -0.717 42.347 1 52.89 ? C4A LLF 436 A 1 HETATM 7 C C4 LLF . . . B 2 5.782 0.036 43.219 1 53.17 ? C4 LLF 436 A 1 HETATM 8 C C3 LLF . . . B 2 6.124 0.396 44.546 1 53.08 ? C3 LLF 436 A 1 HETATM 9 O O3 LLF . . . B 2 7.446 0.043 45.074 1 52.51 ? O3 LLF 436 A 1 HETATM 10 C C2 LLF . . . B 2 5.182 1.125 45.312 1 52.87 ? C2 LLF 436 A 1 HETATM 11 C C2A LLF . . . B 2 5.502 1.518 46.723 1 51.62 ? C2A LLF 436 A 1 HETATM 12 N N1 LLF . . . B 2 3.946 1.442 44.753 1 53.38 ? N1 LLF 436 A 1 HETATM 13 C C5 LLF . . . B 2 4.528 0.395 42.683 1 52.51 ? C5 LLF 436 A 1 HETATM 14 C C6 LLF . . . B 2 3.591 1.113 43.46 1 52.6 ? C6 LLF 436 A 1 HETATM 15 C C5M LLF . . . B 2 4.258 0.008 41.262 1 51.38 ? C5M LLF 436 A 1 HETATM 16 O O4P LLF . . . B 2 3.448 -1.125 40.866 1 46.27 ? O4P LLF 436 A 1 HETATM 17 P P LLF . . . B 2 3.961 -2.116 39.728 1 41.6 ? P LLF 436 A 1 HETATM 18 O OP1 LLF . . . B 2 2.952 -3.154 39.93 1 39.53 ? OP1 LLF 436 A 1 HETATM 19 O OP2 LLF . . . B 2 3.887 -1.519 38.385 1 43.37 ? OP2 LLF 436 A 1 HETATM 20 O OP3 LLF . . . B 2 5.276 -2.701 39.995 1 42.6 ? OP3 LLF 436 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #