data_2G70 # _model_server_result.job_id AJrr5KXi2gSsMiuihD5FeQ _model_server_result.datetime_utc '2024-11-28 04:09:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g70 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2002}' # _entry.id 2G70 # _exptl.entry_id 2G70 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G70 _cell.length_a 94.24 _cell.length_b 94.24 _cell.length_c 187.81 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G70 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 A,B,C,D,E,F,G,H,I,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 48 1_555 B SG CYS 139 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 139 A CYS 139 1_555 B SG CYS 48 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 309 n n N HN1 SAM sing 310 n n N HN2 SAM sing 311 n n CA C SAM sing 312 n n CA CB SAM sing 313 n n CA HA SAM sing 314 n n C O SAM doub 315 n n C OXT SAM sing 316 n n CB CG SAM sing 317 n n CB HB1 SAM sing 318 n n CB HB2 SAM sing 319 n n CG SD SAM sing 320 n n CG HG1 SAM sing 321 n n CG HG2 SAM sing 322 n n SD CE SAM sing 323 n n SD C5' SAM sing 324 n n CE HE1 SAM sing 325 n n CE HE2 SAM sing 326 n n CE HE3 SAM sing 327 n n C5' C4' SAM sing 328 n n C5' "H5'1" SAM sing 329 n n C5' "H5'2" SAM sing 330 n n C4' O4' SAM sing 331 n n C4' C3' SAM sing 332 n n C4' H4' SAM sing 333 n n O4' C1' SAM sing 334 n n C3' O3' SAM sing 335 n n C3' C2' SAM sing 336 n n C3' H3' SAM sing 337 n n O3' HO3' SAM sing 338 n n C2' O2' SAM sing 339 n n C2' C1' SAM sing 340 n n C2' H2' SAM sing 341 n n O2' HO2' SAM sing 342 n n C1' N9 SAM sing 343 n n C1' H1' SAM sing 344 n n N9 C8 SAM sing 345 n y N9 C4 SAM sing 346 n y C8 N7 SAM doub 347 n y C8 H8 SAM sing 348 n n N7 C5 SAM sing 349 n y C5 C6 SAM sing 350 n y C5 C4 SAM doub 351 n y C6 N6 SAM sing 352 n n C6 N1 SAM doub 353 n y N6 HN61 SAM sing 354 n n N6 HN62 SAM sing 355 n n N1 C2 SAM sing 356 n y C2 N3 SAM doub 357 n y C2 H2 SAM sing 358 n n N3 C4 SAM sing 359 n y # _atom_sites.entry_id 2G70 _atom_sites.fract_transf_matrix[1][1] 0.010611 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010611 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005325 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAM A 1 2001 2001 SAM SAM . D 3 HNT A 1 5001 5001 HNT HNT . E 3 HNT A 1 5003 5003 HNT HNT . F 4 PO4 B 1 502 502 PO4 PO4 . G 2 SAM B 1 2002 2002 SAM SAM . H 3 HNT B 1 5002 5002 HNT HNT . I 5 HOH A 1 5004 2 HOH HOH . I 5 HOH A 2 5005 3 HOH HOH . I 5 HOH A 3 5006 5 HOH HOH . I 5 HOH A 4 5007 7 HOH HOH . I 5 HOH A 5 5008 11 HOH HOH . I 5 HOH A 6 5009 13 HOH HOH . I 5 HOH A 7 5010 15 HOH HOH . I 5 HOH A 8 5011 20 HOH HOH . I 5 HOH A 9 5012 23 HOH HOH . I 5 HOH A 10 5013 25 HOH HOH . I 5 HOH A 11 5014 27 HOH HOH . I 5 HOH A 12 5015 28 HOH HOH . I 5 HOH A 13 5016 29 HOH HOH . I 5 HOH A 14 5017 32 HOH HOH . I 5 HOH A 15 5018 33 HOH HOH . I 5 HOH A 16 5019 34 HOH HOH . I 5 HOH A 17 5020 35 HOH HOH . I 5 HOH A 18 5021 36 HOH HOH . I 5 HOH A 19 5022 37 HOH HOH . I 5 HOH A 20 5023 38 HOH HOH . I 5 HOH A 21 5024 40 HOH HOH . I 5 HOH A 22 5025 44 HOH HOH . I 5 HOH A 23 5026 46 HOH HOH . I 5 HOH A 24 5027 47 HOH HOH . I 5 HOH A 25 5028 50 HOH HOH . I 5 HOH A 26 5029 51 HOH HOH . I 5 HOH A 27 5030 53 HOH HOH . I 5 HOH A 28 5031 56 HOH HOH . I 5 HOH A 29 5032 61 HOH HOH . I 5 HOH A 30 5033 66 HOH HOH . I 5 HOH A 31 5034 67 HOH HOH . I 5 HOH A 32 5035 74 HOH HOH . I 5 HOH A 33 5036 76 HOH HOH . I 5 HOH A 34 5037 77 HOH HOH . I 5 HOH A 35 5038 85 HOH HOH . I 5 HOH A 36 5039 86 HOH HOH . I 5 HOH A 37 5040 87 HOH HOH . J 5 HOH B 1 5003 1 HOH HOH . J 5 HOH B 2 5004 4 HOH HOH . J 5 HOH B 3 5005 6 HOH HOH . J 5 HOH B 4 5006 8 HOH HOH . J 5 HOH B 5 5007 10 HOH HOH . J 5 HOH B 6 5008 12 HOH HOH . J 5 HOH B 7 5009 14 HOH HOH . J 5 HOH B 8 5010 16 HOH HOH . J 5 HOH B 9 5011 17 HOH HOH . J 5 HOH B 10 5012 18 HOH HOH . J 5 HOH B 11 5013 19 HOH HOH . J 5 HOH B 12 5014 21 HOH HOH . J 5 HOH B 13 5015 22 HOH HOH . J 5 HOH B 14 5016 24 HOH HOH . J 5 HOH B 15 5017 26 HOH HOH . J 5 HOH B 16 5018 30 HOH HOH . J 5 HOH B 17 5019 31 HOH HOH . J 5 HOH B 18 5020 39 HOH HOH . J 5 HOH B 19 5021 42 HOH HOH . J 5 HOH B 20 5022 43 HOH HOH . J 5 HOH B 21 5023 45 HOH HOH . J 5 HOH B 22 5024 48 HOH HOH . J 5 HOH B 23 5025 49 HOH HOH . J 5 HOH B 24 5026 52 HOH HOH . J 5 HOH B 25 5027 54 HOH HOH . J 5 HOH B 26 5028 55 HOH HOH . J 5 HOH B 27 5029 57 HOH HOH . J 5 HOH B 28 5030 58 HOH HOH . J 5 HOH B 29 5031 59 HOH HOH . J 5 HOH B 30 5032 60 HOH HOH . J 5 HOH B 31 5033 63 HOH HOH . J 5 HOH B 32 5034 64 HOH HOH . J 5 HOH B 33 5035 65 HOH HOH . J 5 HOH B 34 5036 68 HOH HOH . J 5 HOH B 35 5037 69 HOH HOH . J 5 HOH B 36 5038 70 HOH HOH . J 5 HOH B 37 5039 71 HOH HOH . J 5 HOH B 38 5040 72 HOH HOH . J 5 HOH B 39 5041 73 HOH HOH . J 5 HOH B 40 5042 75 HOH HOH . J 5 HOH B 41 5043 78 HOH HOH . J 5 HOH B 42 5044 79 HOH HOH . J 5 HOH B 43 5045 80 HOH HOH . J 5 HOH B 44 5046 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . G 2 28.266 50.036 -28.072 1 57.84 ? N SAM 2002 B 1 HETATM 2 C CA SAM . . . G 2 28.922 51.063 -27.271 1 58.29 ? CA SAM 2002 B 1 HETATM 3 C C SAM . . . G 2 27.916 51.918 -26.519 1 56.33 ? C SAM 2002 B 1 HETATM 4 O O SAM . . . G 2 26.745 51.528 -26.472 1 56.21 ? O SAM 2002 B 1 HETATM 5 O OXT SAM . . . G 2 28.31 52.939 -25.94 1 56.08 ? OXT SAM 2002 B 1 HETATM 6 C CB SAM . . . G 2 29.889 51.912 -28.156 1 62.2 ? CB SAM 2002 B 1 HETATM 7 C CG SAM . . . G 2 29.322 52.647 -29.401 1 66.28 ? CG SAM 2002 B 1 HETATM 8 S SD SAM . . . G 2 30.646 53.456 -30.467 1 72.95 ? SD SAM 2002 B 1 HETATM 9 C CE SAM . . . G 2 30.394 55.22 -30.585 1 70.63 ? CE SAM 2002 B 1 HETATM 10 C C5' SAM . . . G 2 30.655 52.761 -32.167 1 65.25 ? C5' SAM 2002 B 1 HETATM 11 C C4' SAM . . . G 2 31.307 51.404 -32.161 1 64.88 ? C4' SAM 2002 B 1 HETATM 12 O O4' SAM . . . G 2 31.214 50.728 -33.438 1 62.79 ? O4' SAM 2002 B 1 HETATM 13 C C3' SAM . . . G 2 32.786 51.462 -31.786 1 64.06 ? C3' SAM 2002 B 1 HETATM 14 O O3' SAM . . . G 2 33.031 50.612 -30.674 1 66.33 ? O3' SAM 2002 B 1 HETATM 15 C C2' SAM . . . G 2 33.501 50.995 -33.054 1 63.23 ? C2' SAM 2002 B 1 HETATM 16 O O2' SAM . . . G 2 34.669 50.245 -32.785 1 63.11 ? O2' SAM 2002 B 1 HETATM 17 C C1' SAM . . . G 2 32.447 50.1 -33.701 1 61.17 ? C1' SAM 2002 B 1 HETATM 18 N N9 SAM . . . G 2 32.588 49.945 -35.147 1 58.37 ? N9 SAM 2002 B 1 HETATM 19 C C8 SAM . . . G 2 33.339 50.727 -36.073 1 57.86 ? C8 SAM 2002 B 1 HETATM 20 N N7 SAM . . . G 2 33.261 50.287 -37.308 1 57.65 ? N7 SAM 2002 B 1 HETATM 21 C C5 SAM . . . G 2 32.424 49.184 -37.2 1 57.54 ? C5 SAM 2002 B 1 HETATM 22 C C6 SAM . . . G 2 31.981 48.293 -38.21 1 57.79 ? C6 SAM 2002 B 1 HETATM 23 N N6 SAM . . . G 2 32.303 48.403 -39.501 1 57.89 ? N6 SAM 2002 B 1 HETATM 24 N N1 SAM . . . G 2 31.168 47.266 -37.827 1 58.06 ? N1 SAM 2002 B 1 HETATM 25 C C2 SAM . . . G 2 30.826 47.166 -36.516 1 56.67 ? C2 SAM 2002 B 1 HETATM 26 N N3 SAM . . . G 2 31.186 47.961 -35.481 1 58.09 ? N3 SAM 2002 B 1 HETATM 27 C C4 SAM . . . G 2 31.999 48.959 -35.9 1 58.21 ? C4 SAM 2002 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 27 #