data_2G73 # _model_server_result.job_id 80EOXFQ97CcGxKOwQEnZGA _model_server_result.datetime_utc '2024-10-19 00:47:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g73 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":186}' # _entry.id 2G73 # _exptl.entry_id 2G73 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.107 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-HYDROXY-3-METHYL BUTYL DIPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G73 _cell.length_a 68.935 _cell.length_b 71.477 _cell.length_c 91.955 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G73 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O CYS 67 A CYS 67 1_555 D MG MG . A MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc2 A OE2 GLU 87 A GLU 87 1_555 D MG MG . A MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc3 A OE1 GLU 114 A GLU 114 1_555 C MN MN . A MN 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc4 A OE2 GLU 114 A GLU 114 1_555 C MN MN . A MN 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc5 A OE2 GLU 116 A GLU 116 1_555 C MN MN . A MN 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc6 D MG MG . A MG 185 1_555 E O1 EIP . A EIP 186 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.9 ? metalc ? metalc7 D MG MG . A MG 185 1_555 E O1 EIP . A EIP 186 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.205 ? metalc ? metalc8 D MG MG . A MG 185 1_555 E O7 EIP . A EIP 186 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.874 ? metalc ? metalc9 D MG MG . A MG 185 1_555 E O7 EIP . A EIP 186 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.062 ? metalc ? metalc10 D MG MG . A MG 185 1_555 I O HOH . A HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? metalc ? metalc11 D MG MG . A MG 185 1_555 I O HOH . A HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.846 ? metalc ? metalc12 B O CYS 67 B CYS 67 1_555 G MG MG . B MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc13 B OE2 GLU 87 B GLU 87 1_555 G MG MG . B MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc14 B OE1 GLU 114 B GLU 114 1_555 F MN MN . B MN 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc15 B OE2 GLU 114 B GLU 114 1_555 F MN MN . B MN 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc16 B OE2 GLU 116 B GLU 116 1_555 F MN MN . B MN 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc17 G MG MG . B MG 185 1_555 H O7 EIP . B EIP 186 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.009 ? metalc ? metalc18 G MG MG . B MG 185 1_555 H O7 EIP . B EIP 186 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.839 ? metalc ? metalc19 G MG MG . B MG 185 1_555 H O1 EIP . B EIP 186 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.137 ? metalc ? metalc20 G MG MG . B MG 185 1_555 H O1 EIP . B EIP 186 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.011 ? metalc ? metalc21 G MG MG . B MG 185 1_555 J O HOH . B HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc22 G MG MG . B MG 185 1_555 J O HOH . B HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? # _chem_comp.formula 'C5 H14 O8 P2' _chem_comp.formula_weight 264.107 _chem_comp.id EIP _chem_comp.mon_nstd_flag . _chem_comp.name '4-HYDROXY-3-METHYL BUTYL DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P4 EIP sing 83 n n O1 HO1 EIP sing 84 n n O2 P4 EIP sing 85 n n O2 HO2 EIP sing 86 n n O3 P4 EIP doub 87 n n P4 O5 EIP sing 88 n n O5 P8 EIP sing 89 n n O6 P8 EIP sing 90 n n O6 HO6 EIP sing 91 n n O7 P8 EIP doub 92 n n P8 O9 EIP sing 93 n n O9 C10 EIP sing 94 n n C10 C11 EIP sing 95 n n C10 H101 EIP sing 96 n n C10 H102 EIP sing 97 n n C11 C12 EIP sing 98 n n C11 H111 EIP sing 99 n n C11 H112 EIP sing 100 n n C12 C13 EIP sing 101 n n C12 C14 EIP sing 102 n n C12 H12 EIP sing 103 n n C13 O15 EIP sing 104 n n C13 H131 EIP sing 105 n n C13 H132 EIP sing 106 n n C14 H141 EIP sing 107 n n C14 H142 EIP sing 108 n n C14 H143 EIP sing 109 n n O15 H15 EIP sing 110 n n # _atom_sites.entry_id 2G73 _atom_sites.fract_transf_matrix[1][1] 0.014506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013991 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010875 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 184 180 MN MN . D 3 MG A 1 185 181 MG MG . E 4 EIP A 1 186 182 EIP EIP . F 2 MN B 1 184 184 MN MN . G 3 MG B 1 185 185 MG MG . H 4 EIP B 1 186 186 EIP EIP . I 5 HOH A 1 201 201 HOH HOH . I 5 HOH A 2 202 202 HOH HOH . I 5 HOH A 3 205 205 HOH HOH . I 5 HOH A 4 206 206 HOH HOH . I 5 HOH A 5 207 207 HOH HOH . I 5 HOH A 6 208 208 HOH HOH . I 5 HOH A 7 209 209 HOH HOH . I 5 HOH A 8 210 210 HOH HOH . I 5 HOH A 9 214 214 HOH HOH . I 5 HOH A 10 215 215 HOH HOH . I 5 HOH A 11 216 216 HOH HOH . I 5 HOH A 12 217 217 HOH HOH . I 5 HOH A 13 218 218 HOH HOH . I 5 HOH A 14 221 221 HOH HOH . I 5 HOH A 15 222 222 HOH HOH . I 5 HOH A 16 223 223 HOH HOH . I 5 HOH A 17 224 224 HOH HOH . I 5 HOH A 18 228 228 HOH HOH . I 5 HOH A 19 229 229 HOH HOH . I 5 HOH A 20 231 231 HOH HOH . I 5 HOH A 21 235 235 HOH HOH . I 5 HOH A 22 238 238 HOH HOH . I 5 HOH A 23 240 240 HOH HOH . I 5 HOH A 24 242 242 HOH HOH . I 5 HOH A 25 244 244 HOH HOH . I 5 HOH A 26 247 247 HOH HOH . I 5 HOH A 27 248 248 HOH HOH . I 5 HOH A 28 249 249 HOH HOH . I 5 HOH A 29 251 251 HOH HOH . I 5 HOH A 30 252 252 HOH HOH . I 5 HOH A 31 253 253 HOH HOH . I 5 HOH A 32 255 255 HOH HOH . I 5 HOH A 33 257 257 HOH HOH . I 5 HOH A 34 258 258 HOH HOH . I 5 HOH A 35 260 260 HOH HOH . I 5 HOH A 36 262 262 HOH HOH . I 5 HOH A 37 263 263 HOH HOH . I 5 HOH A 38 264 264 HOH HOH . I 5 HOH A 39 265 265 HOH HOH . I 5 HOH A 40 266 266 HOH HOH . I 5 HOH A 41 270 270 HOH HOH . I 5 HOH A 42 272 272 HOH HOH . I 5 HOH A 43 273 273 HOH HOH . I 5 HOH A 44 274 274 HOH HOH . I 5 HOH A 45 275 275 HOH HOH . I 5 HOH A 46 280 280 HOH HOH . I 5 HOH A 47 282 282 HOH HOH . I 5 HOH A 48 285 285 HOH HOH . I 5 HOH A 49 286 286 HOH HOH . I 5 HOH A 50 287 287 HOH HOH . I 5 HOH A 51 290 290 HOH HOH . I 5 HOH A 52 293 293 HOH HOH . I 5 HOH A 53 294 294 HOH HOH . I 5 HOH A 54 295 295 HOH HOH . I 5 HOH A 55 296 296 HOH HOH . I 5 HOH A 56 297 297 HOH HOH . I 5 HOH A 57 302 302 HOH HOH . I 5 HOH A 58 303 303 HOH HOH . I 5 HOH A 59 305 305 HOH HOH . I 5 HOH A 60 306 306 HOH HOH . I 5 HOH A 61 1287 1287 HOH HOH . I 5 HOH A 62 1295 1295 HOH HOH . J 5 HOH B 1 203 203 HOH HOH . J 5 HOH B 2 204 204 HOH HOH . J 5 HOH B 3 211 211 HOH HOH . J 5 HOH B 4 212 212 HOH HOH . J 5 HOH B 5 213 213 HOH HOH . J 5 HOH B 6 219 219 HOH HOH . J 5 HOH B 7 220 220 HOH HOH . J 5 HOH B 8 225 225 HOH HOH . J 5 HOH B 9 226 226 HOH HOH . J 5 HOH B 10 227 227 HOH HOH . J 5 HOH B 11 230 230 HOH HOH . J 5 HOH B 12 232 232 HOH HOH . J 5 HOH B 13 233 233 HOH HOH . J 5 HOH B 14 234 234 HOH HOH . J 5 HOH B 15 236 236 HOH HOH . J 5 HOH B 16 237 237 HOH HOH . J 5 HOH B 17 239 239 HOH HOH . J 5 HOH B 18 241 241 HOH HOH . J 5 HOH B 19 243 243 HOH HOH . J 5 HOH B 20 245 245 HOH HOH . J 5 HOH B 21 246 246 HOH HOH . J 5 HOH B 22 250 250 HOH HOH . J 5 HOH B 23 254 254 HOH HOH . J 5 HOH B 24 256 256 HOH HOH . J 5 HOH B 25 259 259 HOH HOH . J 5 HOH B 26 261 261 HOH HOH . J 5 HOH B 27 267 267 HOH HOH . J 5 HOH B 28 268 268 HOH HOH . J 5 HOH B 29 269 269 HOH HOH . J 5 HOH B 30 271 271 HOH HOH . J 5 HOH B 31 276 276 HOH HOH . J 5 HOH B 32 277 277 HOH HOH . J 5 HOH B 33 278 278 HOH HOH . J 5 HOH B 34 279 279 HOH HOH . J 5 HOH B 35 281 281 HOH HOH . J 5 HOH B 36 283 283 HOH HOH . J 5 HOH B 37 284 284 HOH HOH . J 5 HOH B 38 288 288 HOH HOH . J 5 HOH B 39 289 289 HOH HOH . J 5 HOH B 40 291 291 HOH HOH . J 5 HOH B 41 292 292 HOH HOH . J 5 HOH B 42 298 298 HOH HOH . J 5 HOH B 43 299 299 HOH HOH . J 5 HOH B 44 300 300 HOH HOH . J 5 HOH B 45 301 301 HOH HOH . J 5 HOH B 46 304 304 HOH HOH . J 5 HOH B 47 1288 1288 HOH HOH . J 5 HOH B 48 1289 1289 HOH HOH . J 5 HOH B 49 1290 1290 HOH HOH . J 5 HOH B 50 1291 1291 HOH HOH . J 5 HOH B 51 1292 1292 HOH HOH . J 5 HOH B 52 1293 1293 HOH HOH . J 5 HOH B 53 1294 1294 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 EIP . A . H 4 40.037 13.904 8.488 0.5 20.05 ? O1 EIP 186 B 1 HETATM 2 O O1 EIP . B . H 4 39.361 13.955 8.042 0.5 19.09 ? O1 EIP 186 B 1 HETATM 3 O O2 EIP . A . H 4 39.605 11.919 7.385 0.5 28.07 ? O2 EIP 186 B 1 HETATM 4 O O2 EIP . B . H 4 39.727 11.722 7.544 0.5 24.62 ? O2 EIP 186 B 1 HETATM 5 O O3 EIP . A . H 4 41.853 12.58 7.71 0.5 22.7 ? O3 EIP 186 B 1 HETATM 6 O O3 EIP . B . H 4 41.57 13.214 7.545 0.5 26.76 ? O3 EIP 186 B 1 HETATM 7 P P4 EIP . A . H 4 40.45 12.475 8.263 0.5 28.65 ? P4 EIP 186 B 1 HETATM 8 P P4 EIP . B . H 4 40.278 12.767 8.172 0.5 25.43 ? P4 EIP 186 B 1 HETATM 9 O O5 EIP . A . H 4 40.516 11.751 9.611 0.5 19.34 ? O5 EIP 186 B 1 HETATM 10 O O5 EIP . B . H 4 40.503 12.54 9.678 0.5 21.29 ? O5 EIP 186 B 1 HETATM 11 O O6 EIP . A . H 4 38.858 10.977 11.219 0.5 18.08 ? O6 EIP 186 B 1 HETATM 12 O O6 EIP . B . H 4 38.587 11.152 10.275 0.5 15.76 ? O6 EIP 186 B 1 HETATM 13 O O7 EIP . A . H 4 38.777 13.201 10.388 0.5 26.01 ? O7 EIP 186 B 1 HETATM 14 O O7 EIP . B . H 4 38.523 13.495 10.588 0.5 12.06 ? O7 EIP 186 B 1 HETATM 15 P P8 EIP . A . H 4 39.606 12.022 10.818 0.5 23.5 ? P8 EIP 186 B 1 HETATM 16 P P8 EIP . B . H 4 39.326 12.215 10.624 0.5 29.7 ? P8 EIP 186 B 1 HETATM 17 O O9 EIP . A . H 4 40.497 12.567 11.926 0.5 31.97 ? O9 EIP 186 B 1 HETATM 18 O O9 EIP . B . H 4 39.89 12.179 12.031 0.5 32.79 ? O9 EIP 186 B 1 HETATM 19 C C10 EIP . A . H 4 41.131 11.523 12.679 0.5 34.04 ? C10 EIP 186 B 1 HETATM 20 C C10 EIP . B . H 4 40.734 11.055 12.311 0.5 34.56 ? C10 EIP 186 B 1 HETATM 21 C C11 EIP . A . H 4 41.728 12.039 14.001 0.5 37.01 ? C11 EIP 186 B 1 HETATM 22 C C11 EIP . B . H 4 41.827 11.373 13.344 0.5 37.61 ? C11 EIP 186 B 1 HETATM 23 C C12 EIP . A . H 4 41.504 10.948 15.083 0.5 42.99 ? C12 EIP 186 B 1 HETATM 24 C C12 EIP . B . H 4 41.514 10.604 14.661 0.5 42.74 ? C12 EIP 186 B 1 HETATM 25 C C13 EIP . A . H 4 40.063 10.414 14.913 0.5 39.78 ? C13 EIP 186 B 1 HETATM 26 C C13 EIP . B . H 4 41.325 11.656 15.779 0.5 44.98 ? C13 EIP 186 B 1 HETATM 27 C C14 EIP . A . H 4 41.615 11.587 16.483 0.5 46.4 ? C14 EIP 186 B 1 HETATM 28 C C14 EIP . B . H 4 40.143 9.908 14.464 0.5 37.36 ? C14 EIP 186 B 1 HETATM 29 O O15 EIP . A . H 4 39.458 10.33 16.207 0.5 46.55 ? O15 EIP 186 B 1 HETATM 30 O O15 EIP . B . H 4 40.29 12.559 15.388 0.5 40.24 ? O15 EIP 186 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 30 #