data_2G76 # _model_server_result.job_id t1lE_GgilKlOhAYZFg1NgQ _model_server_result.datetime_utc '2024-11-25 11:01:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g76 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":503}' # _entry.id 2G76 # _exptl.entry_id 2G76 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MALATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.99 _cell.angle_gamma 90 _cell.entry_id 2G76 _cell.length_a 43.084 _cell.length_b 124.113 _cell.length_c 59.502 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G76 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id MLT _chem_comp.mon_nstd_flag . _chem_comp.name D-MALATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MLT doub 237 n n C1 O2 MLT sing 238 n n C1 C2 MLT sing 239 n n C2 O3 MLT sing 240 n n C2 C3 MLT sing 241 n n C2 H2 MLT sing 242 n n O3 HO3 MLT sing 243 n n C3 C4 MLT sing 244 n n C3 H31 MLT sing 245 n n C3 H32 MLT sing 246 n n C4 O4 MLT doub 247 n n C4 O5 MLT sing 248 n n O5 HO5 MLT sing 249 n n O2 H6 MLT sing 250 n n # _atom_sites.entry_id 2G76 _atom_sites.fract_transf_matrix[1][1] 0.02321 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004507 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008057 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MLT A 1 503 503 MLT MLT . D 3 NAD A 1 501 501 NAD NAD . E 2 MLT B 1 504 504 MLT MLT . F 3 NAD B 1 502 502 NAD NAD . G 4 HOH A 1 504 7 HOH HOH . G 4 HOH A 2 505 10 HOH HOH . G 4 HOH A 3 506 11 HOH HOH . G 4 HOH A 4 507 19 HOH HOH . G 4 HOH A 5 508 21 HOH HOH . G 4 HOH A 6 509 22 HOH HOH . G 4 HOH A 7 510 26 HOH HOH . G 4 HOH A 8 511 28 HOH HOH . G 4 HOH A 9 512 29 HOH HOH . G 4 HOH A 10 513 39 HOH HOH . G 4 HOH A 11 514 42 HOH HOH . G 4 HOH A 12 515 45 HOH HOH . G 4 HOH A 13 516 48 HOH HOH . G 4 HOH A 14 517 50 HOH HOH . G 4 HOH A 15 518 52 HOH HOH . G 4 HOH A 16 519 56 HOH HOH . G 4 HOH A 17 520 57 HOH HOH . G 4 HOH A 18 521 60 HOH HOH . G 4 HOH A 19 522 61 HOH HOH . G 4 HOH A 20 523 63 HOH HOH . G 4 HOH A 21 524 66 HOH HOH . G 4 HOH A 22 525 67 HOH HOH . G 4 HOH A 23 526 73 HOH HOH . G 4 HOH A 24 527 75 HOH HOH . G 4 HOH A 25 528 78 HOH HOH . G 4 HOH A 26 529 81 HOH HOH . G 4 HOH A 27 530 82 HOH HOH . G 4 HOH A 28 531 87 HOH HOH . G 4 HOH A 29 532 89 HOH HOH . G 4 HOH A 30 533 90 HOH HOH . G 4 HOH A 31 534 91 HOH HOH . G 4 HOH A 32 535 93 HOH HOH . G 4 HOH A 33 536 94 HOH HOH . G 4 HOH A 34 537 95 HOH HOH . G 4 HOH A 35 538 96 HOH HOH . G 4 HOH A 36 539 100 HOH HOH . G 4 HOH A 37 540 102 HOH HOH . G 4 HOH A 38 541 104 HOH HOH . G 4 HOH A 39 542 105 HOH HOH . G 4 HOH A 40 543 107 HOH HOH . G 4 HOH A 41 544 114 HOH HOH . G 4 HOH A 42 545 115 HOH HOH . G 4 HOH A 43 546 117 HOH HOH . G 4 HOH A 44 547 119 HOH HOH . G 4 HOH A 45 548 122 HOH HOH . G 4 HOH A 46 549 123 HOH HOH . G 4 HOH A 47 550 124 HOH HOH . G 4 HOH A 48 551 127 HOH HOH . G 4 HOH A 49 552 130 HOH HOH . G 4 HOH A 50 553 131 HOH HOH . G 4 HOH A 51 554 133 HOH HOH . G 4 HOH A 52 555 134 HOH HOH . G 4 HOH A 53 556 135 HOH HOH . G 4 HOH A 54 557 137 HOH HOH . G 4 HOH A 55 558 138 HOH HOH . G 4 HOH A 56 559 143 HOH HOH . G 4 HOH A 57 560 153 HOH HOH . G 4 HOH A 58 561 155 HOH HOH . G 4 HOH A 59 562 157 HOH HOH . G 4 HOH A 60 563 160 HOH HOH . G 4 HOH A 61 564 162 HOH HOH . G 4 HOH A 62 565 163 HOH HOH . G 4 HOH A 63 566 181 HOH HOH . G 4 HOH A 64 567 186 HOH HOH . G 4 HOH A 65 568 187 HOH HOH . G 4 HOH A 66 569 189 HOH HOH . G 4 HOH A 67 570 192 HOH HOH . G 4 HOH A 68 571 193 HOH HOH . G 4 HOH A 69 572 194 HOH HOH . G 4 HOH A 70 573 198 HOH HOH . G 4 HOH A 71 574 199 HOH HOH . G 4 HOH A 72 575 200 HOH HOH . G 4 HOH A 73 576 201 HOH HOH . G 4 HOH A 74 577 213 HOH HOH . G 4 HOH A 75 578 214 HOH HOH . G 4 HOH A 76 579 215 HOH HOH . G 4 HOH A 77 580 217 HOH HOH . G 4 HOH A 78 581 218 HOH HOH . G 4 HOH A 79 582 219 HOH HOH . G 4 HOH A 80 583 222 HOH HOH . G 4 HOH A 81 584 223 HOH HOH . G 4 HOH A 82 585 224 HOH HOH . G 4 HOH A 83 586 230 HOH HOH . G 4 HOH A 84 587 243 HOH HOH . G 4 HOH A 85 588 255 HOH HOH . G 4 HOH A 86 589 257 HOH HOH . G 4 HOH A 87 590 269 HOH HOH . G 4 HOH A 88 591 274 HOH HOH . G 4 HOH A 89 592 275 HOH HOH . G 4 HOH A 90 593 276 HOH HOH . G 4 HOH A 91 594 282 HOH HOH . G 4 HOH A 92 595 296 HOH HOH . G 4 HOH A 93 596 313 HOH HOH . G 4 HOH A 94 597 319 HOH HOH . G 4 HOH A 95 598 321 HOH HOH . G 4 HOH A 96 599 322 HOH HOH . G 4 HOH A 97 600 324 HOH HOH . G 4 HOH A 98 601 333 HOH HOH . G 4 HOH A 99 602 334 HOH HOH . G 4 HOH A 100 603 338 HOH HOH . G 4 HOH A 101 604 339 HOH HOH . G 4 HOH A 102 605 343 HOH HOH . G 4 HOH A 103 606 344 HOH HOH . G 4 HOH A 104 607 345 HOH HOH . G 4 HOH A 105 608 346 HOH HOH . G 4 HOH A 106 609 347 HOH HOH . G 4 HOH A 107 610 348 HOH HOH . G 4 HOH A 108 611 349 HOH HOH . G 4 HOH A 109 612 350 HOH HOH . G 4 HOH A 110 613 351 HOH HOH . G 4 HOH A 111 614 352 HOH HOH . G 4 HOH A 112 615 353 HOH HOH . G 4 HOH A 113 616 354 HOH HOH . G 4 HOH A 114 617 355 HOH HOH . G 4 HOH A 115 618 356 HOH HOH . G 4 HOH A 116 619 357 HOH HOH . G 4 HOH A 117 620 358 HOH HOH . G 4 HOH A 118 621 359 HOH HOH . G 4 HOH A 119 622 360 HOH HOH . G 4 HOH A 120 623 381 HOH HOH . G 4 HOH A 121 624 382 HOH HOH . G 4 HOH A 122 625 383 HOH HOH . G 4 HOH A 123 626 384 HOH HOH . G 4 HOH A 124 627 385 HOH HOH . G 4 HOH A 125 628 386 HOH HOH . G 4 HOH A 126 629 387 HOH HOH . G 4 HOH A 127 630 388 HOH HOH . G 4 HOH A 128 631 389 HOH HOH . G 4 HOH A 129 632 390 HOH HOH . G 4 HOH A 130 633 391 HOH HOH . G 4 HOH A 131 634 392 HOH HOH . G 4 HOH A 132 635 393 HOH HOH . G 4 HOH A 133 636 394 HOH HOH . G 4 HOH A 134 637 395 HOH HOH . H 4 HOH B 1 505 1 HOH HOH . H 4 HOH B 2 506 5 HOH HOH . H 4 HOH B 3 507 15 HOH HOH . H 4 HOH B 4 508 16 HOH HOH . H 4 HOH B 5 509 17 HOH HOH . H 4 HOH B 6 510 20 HOH HOH . H 4 HOH B 7 511 30 HOH HOH . H 4 HOH B 8 512 32 HOH HOH . H 4 HOH B 9 513 40 HOH HOH . H 4 HOH B 10 514 43 HOH HOH . H 4 HOH B 11 515 46 HOH HOH . H 4 HOH B 12 516 47 HOH HOH . H 4 HOH B 13 517 49 HOH HOH . H 4 HOH B 14 518 53 HOH HOH . H 4 HOH B 15 519 58 HOH HOH . H 4 HOH B 16 520 59 HOH HOH . H 4 HOH B 17 521 64 HOH HOH . H 4 HOH B 18 522 65 HOH HOH . H 4 HOH B 19 523 69 HOH HOH . H 4 HOH B 20 524 72 HOH HOH . H 4 HOH B 21 525 74 HOH HOH . H 4 HOH B 22 526 79 HOH HOH . H 4 HOH B 23 527 83 HOH HOH . H 4 HOH B 24 528 84 HOH HOH . H 4 HOH B 25 529 86 HOH HOH . H 4 HOH B 26 530 88 HOH HOH . H 4 HOH B 27 531 92 HOH HOH . H 4 HOH B 28 532 98 HOH HOH . H 4 HOH B 29 533 99 HOH HOH . H 4 HOH B 30 534 101 HOH HOH . H 4 HOH B 31 535 103 HOH HOH . H 4 HOH B 32 536 106 HOH HOH . H 4 HOH B 33 537 108 HOH HOH . H 4 HOH B 34 538 109 HOH HOH . H 4 HOH B 35 539 110 HOH HOH . H 4 HOH B 36 540 111 HOH HOH . H 4 HOH B 37 541 112 HOH HOH . H 4 HOH B 38 542 113 HOH HOH . H 4 HOH B 39 543 116 HOH HOH . H 4 HOH B 40 544 118 HOH HOH . H 4 HOH B 41 545 121 HOH HOH . H 4 HOH B 42 546 129 HOH HOH . H 4 HOH B 43 547 132 HOH HOH . H 4 HOH B 44 548 136 HOH HOH . H 4 HOH B 45 549 140 HOH HOH . H 4 HOH B 46 550 141 HOH HOH . H 4 HOH B 47 551 146 HOH HOH . H 4 HOH B 48 552 147 HOH HOH . H 4 HOH B 49 553 148 HOH HOH . H 4 HOH B 50 554 149 HOH HOH . H 4 HOH B 51 555 150 HOH HOH . H 4 HOH B 52 556 151 HOH HOH . H 4 HOH B 53 557 152 HOH HOH . H 4 HOH B 54 558 154 HOH HOH . H 4 HOH B 55 559 161 HOH HOH . H 4 HOH B 56 560 173 HOH HOH . H 4 HOH B 57 561 175 HOH HOH . H 4 HOH B 58 562 184 HOH HOH . H 4 HOH B 59 563 185 HOH HOH . H 4 HOH B 60 564 190 HOH HOH . H 4 HOH B 61 565 202 HOH HOH . H 4 HOH B 62 566 205 HOH HOH . H 4 HOH B 63 567 206 HOH HOH . H 4 HOH B 64 568 208 HOH HOH . H 4 HOH B 65 569 209 HOH HOH . H 4 HOH B 66 570 210 HOH HOH . H 4 HOH B 67 571 211 HOH HOH . H 4 HOH B 68 572 221 HOH HOH . H 4 HOH B 69 573 225 HOH HOH . H 4 HOH B 70 574 226 HOH HOH . H 4 HOH B 71 575 227 HOH HOH . H 4 HOH B 72 576 239 HOH HOH . H 4 HOH B 73 577 240 HOH HOH . H 4 HOH B 74 578 244 HOH HOH . H 4 HOH B 75 579 251 HOH HOH . H 4 HOH B 76 580 256 HOH HOH . H 4 HOH B 77 581 260 HOH HOH . H 4 HOH B 78 582 261 HOH HOH . H 4 HOH B 79 583 262 HOH HOH . H 4 HOH B 80 584 263 HOH HOH . H 4 HOH B 81 585 266 HOH HOH . H 4 HOH B 82 586 268 HOH HOH . H 4 HOH B 83 587 271 HOH HOH . H 4 HOH B 84 588 272 HOH HOH . H 4 HOH B 85 589 277 HOH HOH . H 4 HOH B 86 590 281 HOH HOH . H 4 HOH B 87 591 283 HOH HOH . H 4 HOH B 88 592 295 HOH HOH . H 4 HOH B 89 593 297 HOH HOH . H 4 HOH B 90 594 301 HOH HOH . H 4 HOH B 91 595 305 HOH HOH . H 4 HOH B 92 596 308 HOH HOH . H 4 HOH B 93 597 309 HOH HOH . H 4 HOH B 94 598 314 HOH HOH . H 4 HOH B 95 599 315 HOH HOH . H 4 HOH B 96 600 316 HOH HOH . H 4 HOH B 97 601 317 HOH HOH . H 4 HOH B 98 602 318 HOH HOH . H 4 HOH B 99 603 320 HOH HOH . H 4 HOH B 100 604 323 HOH HOH . H 4 HOH B 101 605 325 HOH HOH . H 4 HOH B 102 606 326 HOH HOH . H 4 HOH B 103 607 327 HOH HOH . H 4 HOH B 104 608 328 HOH HOH . H 4 HOH B 105 609 329 HOH HOH . H 4 HOH B 106 610 330 HOH HOH . H 4 HOH B 107 611 331 HOH HOH . H 4 HOH B 108 612 332 HOH HOH . H 4 HOH B 109 613 335 HOH HOH . H 4 HOH B 110 614 336 HOH HOH . H 4 HOH B 111 615 337 HOH HOH . H 4 HOH B 112 616 340 HOH HOH . H 4 HOH B 113 617 341 HOH HOH . H 4 HOH B 114 618 342 HOH HOH . H 4 HOH B 115 619 361 HOH HOH . H 4 HOH B 116 620 362 HOH HOH . H 4 HOH B 117 621 363 HOH HOH . H 4 HOH B 118 622 364 HOH HOH . H 4 HOH B 119 623 365 HOH HOH . H 4 HOH B 120 624 366 HOH HOH . H 4 HOH B 121 625 367 HOH HOH . H 4 HOH B 122 626 368 HOH HOH . H 4 HOH B 123 627 369 HOH HOH . H 4 HOH B 124 628 370 HOH HOH . H 4 HOH B 125 629 371 HOH HOH . H 4 HOH B 126 630 372 HOH HOH . H 4 HOH B 127 631 373 HOH HOH . H 4 HOH B 128 632 374 HOH HOH . H 4 HOH B 129 633 375 HOH HOH . H 4 HOH B 130 634 376 HOH HOH . H 4 HOH B 131 635 377 HOH HOH . H 4 HOH B 132 636 378 HOH HOH . H 4 HOH B 133 637 379 HOH HOH . H 4 HOH B 134 638 380 HOH HOH . H 4 HOH B 135 639 396 HOH HOH . H 4 HOH B 136 640 397 HOH HOH . H 4 HOH B 137 641 398 HOH HOH . H 4 HOH B 138 642 399 HOH HOH . H 4 HOH B 139 643 400 HOH HOH . H 4 HOH B 140 644 401 HOH HOH . H 4 HOH B 141 645 402 HOH HOH . H 4 HOH B 142 646 403 HOH HOH . H 4 HOH B 143 647 404 HOH HOH . H 4 HOH B 144 648 405 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLT . . . C 2 0.925 32.203 3.71 1 32.13 ? C1 MLT 503 A 1 HETATM 2 O O1 MLT . . . C 2 0.922 31.19 2.963 1 30.34 ? O1 MLT 503 A 1 HETATM 3 O O2 MLT . . . C 2 1.741 33.128 3.576 1 33.92 ? O2 MLT 503 A 1 HETATM 4 C C2 MLT . . . C 2 -0.074 32.333 4.806 1 31.95 ? C2 MLT 503 A 1 HETATM 5 O O3 MLT . . . C 2 -0.384 31.065 5.32 1 31.44 ? O3 MLT 503 A 1 HETATM 6 C C3 MLT . . . C 2 -1.31 32.996 4.208 1 32.87 ? C3 MLT 503 A 1 HETATM 7 C C4 MLT . . . C 2 -2.43 32.977 5.208 1 34.44 ? C4 MLT 503 A 1 HETATM 8 O O4 MLT . . . C 2 -3.593 32.705 4.834 1 36.01 ? O4 MLT 503 A 1 HETATM 9 O O5 MLT . . . C 2 -2.207 33.266 6.401 1 36.7 ? O5 MLT 503 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 9 #