data_2G79 # _model_server_result.job_id UhRyYAFSWNUHByreQpvn7Q _model_server_result.datetime_utc '2024-11-21 23:32:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g79 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 2G79 # _exptl.entry_id 2G79 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G79 _cell.length_a 45.493 _cell.length_b 46.325 _cell.length_c 73.597 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G79 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NA NA . A NA 300 1_555 H O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc2 B NA NA . A NA 300 1_555 H O HOH . A HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc3 C NA NA . A NA 301 1_555 H O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc4 C NA NA . A NA 301 1_555 H O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc5 D NA NA . A NA 302 1_555 H O HOH . A HOH 543 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc6 D NA NA . A NA 302 1_555 H O HOH . A HOH 543 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc7 D NA NA . A NA 302 1_555 H O HOH . A HOH 544 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.33 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2G79 _atom_sites.fract_transf_matrix[1][1] 0.02198 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02159 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01359 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 300 300 NA NA . C 2 NA A 1 301 301 NA NA . D 2 NA A 1 302 302 NA NA . E 3 SO4 A 1 400 400 SO4 SO4 . F 3 SO4 A 1 401 401 SO4 SO4 . G 4 RET A 1 200 200 RET RET . H 5 HOH A 1 402 1 HOH HOH . H 5 HOH A 2 403 2 HOH HOH . H 5 HOH A 3 404 3 HOH HOH . H 5 HOH A 4 405 4 HOH HOH . H 5 HOH A 5 406 5 HOH HOH . H 5 HOH A 6 407 6 HOH HOH . H 5 HOH A 7 408 7 HOH HOH . H 5 HOH A 8 409 8 HOH HOH . H 5 HOH A 9 410 9 HOH HOH . H 5 HOH A 10 411 10 HOH HOH . H 5 HOH A 11 412 11 HOH HOH . H 5 HOH A 12 413 12 HOH HOH . H 5 HOH A 13 414 13 HOH HOH . H 5 HOH A 14 415 14 HOH HOH . H 5 HOH A 15 416 15 HOH HOH . H 5 HOH A 16 417 16 HOH HOH . H 5 HOH A 17 418 17 HOH HOH . H 5 HOH A 18 419 18 HOH HOH . H 5 HOH A 19 420 19 HOH HOH . H 5 HOH A 20 421 20 HOH HOH . H 5 HOH A 21 422 21 HOH HOH . H 5 HOH A 22 423 22 HOH HOH . H 5 HOH A 23 424 23 HOH HOH . H 5 HOH A 24 425 24 HOH HOH . H 5 HOH A 25 426 25 HOH HOH . H 5 HOH A 26 427 26 HOH HOH . H 5 HOH A 27 428 27 HOH HOH . H 5 HOH A 28 429 28 HOH HOH . H 5 HOH A 29 430 29 HOH HOH . H 5 HOH A 30 431 30 HOH HOH . H 5 HOH A 31 432 31 HOH HOH . H 5 HOH A 32 433 32 HOH HOH . H 5 HOH A 33 434 33 HOH HOH . H 5 HOH A 34 435 34 HOH HOH . H 5 HOH A 35 436 35 HOH HOH . H 5 HOH A 36 437 36 HOH HOH . H 5 HOH A 37 438 37 HOH HOH . H 5 HOH A 38 439 38 HOH HOH . H 5 HOH A 39 440 39 HOH HOH . H 5 HOH A 40 441 40 HOH HOH . H 5 HOH A 41 442 41 HOH HOH . H 5 HOH A 42 443 42 HOH HOH . H 5 HOH A 43 444 43 HOH HOH . H 5 HOH A 44 445 44 HOH HOH . H 5 HOH A 45 446 45 HOH HOH . H 5 HOH A 46 447 46 HOH HOH . H 5 HOH A 47 448 47 HOH HOH . H 5 HOH A 48 449 48 HOH HOH . H 5 HOH A 49 450 49 HOH HOH . H 5 HOH A 50 451 50 HOH HOH . H 5 HOH A 51 452 51 HOH HOH . H 5 HOH A 52 453 52 HOH HOH . H 5 HOH A 53 454 53 HOH HOH . H 5 HOH A 54 455 54 HOH HOH . H 5 HOH A 55 456 55 HOH HOH . H 5 HOH A 56 457 56 HOH HOH . H 5 HOH A 57 458 57 HOH HOH . H 5 HOH A 58 459 58 HOH HOH . H 5 HOH A 59 460 59 HOH HOH . H 5 HOH A 60 461 60 HOH HOH . H 5 HOH A 61 462 61 HOH HOH . H 5 HOH A 62 463 62 HOH HOH . H 5 HOH A 63 464 63 HOH HOH . H 5 HOH A 64 465 64 HOH HOH . H 5 HOH A 65 466 65 HOH HOH . H 5 HOH A 66 467 66 HOH HOH . H 5 HOH A 67 468 67 HOH HOH . H 5 HOH A 68 469 68 HOH HOH . H 5 HOH A 69 470 69 HOH HOH . H 5 HOH A 70 471 70 HOH HOH . H 5 HOH A 71 472 71 HOH HOH . H 5 HOH A 72 473 72 HOH HOH . H 5 HOH A 73 474 73 HOH HOH . H 5 HOH A 74 475 74 HOH HOH . H 5 HOH A 75 476 75 HOH HOH . H 5 HOH A 76 477 76 HOH HOH . H 5 HOH A 77 478 77 HOH HOH . H 5 HOH A 78 479 78 HOH HOH . H 5 HOH A 79 480 79 HOH HOH . H 5 HOH A 80 481 80 HOH HOH . H 5 HOH A 81 482 81 HOH HOH . H 5 HOH A 82 483 82 HOH HOH . H 5 HOH A 83 484 83 HOH HOH . H 5 HOH A 84 485 84 HOH HOH . H 5 HOH A 85 486 85 HOH HOH . H 5 HOH A 86 487 86 HOH HOH . H 5 HOH A 87 488 87 HOH HOH . H 5 HOH A 88 489 88 HOH HOH . H 5 HOH A 89 490 89 HOH HOH . H 5 HOH A 90 491 90 HOH HOH . H 5 HOH A 91 492 91 HOH HOH . H 5 HOH A 92 493 92 HOH HOH . H 5 HOH A 93 494 93 HOH HOH . H 5 HOH A 94 495 94 HOH HOH . H 5 HOH A 95 496 95 HOH HOH . H 5 HOH A 96 497 96 HOH HOH . H 5 HOH A 97 498 97 HOH HOH . H 5 HOH A 98 499 98 HOH HOH . H 5 HOH A 99 500 99 HOH HOH . H 5 HOH A 100 501 100 HOH HOH . H 5 HOH A 101 502 101 HOH HOH . H 5 HOH A 102 503 102 HOH HOH . H 5 HOH A 103 504 103 HOH HOH . H 5 HOH A 104 505 104 HOH HOH . H 5 HOH A 105 506 105 HOH HOH . H 5 HOH A 106 507 106 HOH HOH . H 5 HOH A 107 508 107 HOH HOH . H 5 HOH A 108 509 108 HOH HOH . H 5 HOH A 109 510 109 HOH HOH . H 5 HOH A 110 511 110 HOH HOH . H 5 HOH A 111 512 111 HOH HOH . H 5 HOH A 112 513 112 HOH HOH . H 5 HOH A 113 514 113 HOH HOH . H 5 HOH A 114 515 114 HOH HOH . H 5 HOH A 115 516 115 HOH HOH . H 5 HOH A 116 517 116 HOH HOH . H 5 HOH A 117 518 117 HOH HOH . H 5 HOH A 118 519 118 HOH HOH . H 5 HOH A 119 520 119 HOH HOH . H 5 HOH A 120 521 120 HOH HOH . H 5 HOH A 121 522 121 HOH HOH . H 5 HOH A 122 523 122 HOH HOH . H 5 HOH A 123 524 123 HOH HOH . H 5 HOH A 124 525 124 HOH HOH . H 5 HOH A 125 526 125 HOH HOH . H 5 HOH A 126 527 126 HOH HOH . H 5 HOH A 127 528 127 HOH HOH . H 5 HOH A 128 529 128 HOH HOH . H 5 HOH A 129 530 129 HOH HOH . H 5 HOH A 130 531 130 HOH HOH . H 5 HOH A 131 532 131 HOH HOH . H 5 HOH A 132 533 132 HOH HOH . H 5 HOH A 133 534 133 HOH HOH . H 5 HOH A 134 535 134 HOH HOH . H 5 HOH A 135 536 135 HOH HOH . H 5 HOH A 136 537 136 HOH HOH . H 5 HOH A 137 538 137 HOH HOH . H 5 HOH A 138 539 138 HOH HOH . H 5 HOH A 139 540 139 HOH HOH . H 5 HOH A 140 541 140 HOH HOH . H 5 HOH A 141 542 141 HOH HOH . H 5 HOH A 142 543 142 HOH HOH . H 5 HOH A 143 544 143 HOH HOH . H 5 HOH A 144 545 144 HOH HOH . H 5 HOH A 145 546 145 HOH HOH . H 5 HOH A 146 547 146 HOH HOH . H 5 HOH A 147 548 147 HOH HOH . H 5 HOH A 148 549 148 HOH HOH . H 5 HOH A 149 550 149 HOH HOH . H 5 HOH A 150 551 150 HOH HOH . H 5 HOH A 151 552 151 HOH HOH . H 5 HOH A 152 553 152 HOH HOH . H 5 HOH A 153 554 153 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 13.83 _atom_site.Cartn_y -14.012 _atom_site.Cartn_z -11.757 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 54.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 300 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #