data_2G96 # _model_server_result.job_id 3OeiXZT7pCFhL--ckatVaw _model_server_result.datetime_utc '2024-11-13 15:19:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g96 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 2G96 # _exptl.entry_id 2G96 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.227 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G96 _cell.length_a 81.893 _cell.length_b 106.078 _cell.length_c 117.305 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G96 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C11 H16 N2 O8 P 1' _chem_comp.formula_weight 335.227 _chem_comp.id NMN _chem_comp.mon_nstd_flag . _chem_comp.name 'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'NICOTINAMIDE MONONUCLEOTIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3P P NMN doub 237 n n P O1P NMN sing 238 n n P O2P NMN sing 239 n n P O5R NMN sing 240 n n O1P H1PO NMN sing 241 n n O2P H2PO NMN sing 242 n n O5R C5R NMN sing 243 n n C5R C4R NMN sing 244 n n C5R H5R1 NMN sing 245 n n C5R H5R2 NMN sing 246 n n C4R O4R NMN sing 247 n n C4R C3R NMN sing 248 n n C4R H4RC NMN sing 249 n n O4R C1R NMN sing 250 n n C3R O3R NMN sing 251 n n C3R C2R NMN sing 252 n n C3R H3RC NMN sing 253 n n O3R H3RO NMN sing 254 n n C2R O2R NMN sing 255 n n C2R C1R NMN sing 256 n n C2R H2RC NMN sing 257 n n O2R H2RO NMN sing 258 n n C1R N1 NMN sing 259 n n C1R H1RC NMN sing 260 n n N1 C2 NMN doub 261 n y N1 C6 NMN sing 262 n y C2 C3 NMN sing 263 n y C2 HC2 NMN sing 264 n n C3 C7 NMN sing 265 n n C3 C4 NMN doub 266 n y C7 O7 NMN doub 267 n n C7 N7 NMN sing 268 n n N7 HN71 NMN sing 269 n n N7 HN72 NMN sing 270 n n C4 C5 NMN sing 271 n y C4 HC4 NMN sing 272 n n C5 C6 NMN doub 273 n y C5 HC5 NMN sing 274 n n C6 HC6 NMN sing 275 n n # _atom_sites.entry_id 2G96 _atom_sites.fract_transf_matrix[1][1] 0.012211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009427 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NMN A 1 1001 1001 NMN NMN . D 2 NMN B 1 1002 1002 NMN NMN . E 3 HOH A 1 1002 1 HOH HOH . E 3 HOH A 2 1003 2 HOH HOH . E 3 HOH A 3 1004 4 HOH HOH . E 3 HOH A 4 1005 5 HOH HOH . E 3 HOH A 5 1006 6 HOH HOH . E 3 HOH A 6 1007 7 HOH HOH . E 3 HOH A 7 1008 11 HOH HOH . E 3 HOH A 8 1009 12 HOH HOH . E 3 HOH A 9 1010 13 HOH HOH . E 3 HOH A 10 1011 14 HOH HOH . E 3 HOH A 11 1012 16 HOH HOH . E 3 HOH A 12 1013 19 HOH HOH . E 3 HOH A 13 1014 22 HOH HOH . E 3 HOH A 14 1015 23 HOH HOH . E 3 HOH A 15 1016 25 HOH HOH . E 3 HOH A 16 1017 26 HOH HOH . E 3 HOH A 17 1018 27 HOH HOH . E 3 HOH A 18 1019 28 HOH HOH . E 3 HOH A 19 1020 29 HOH HOH . E 3 HOH A 20 1021 31 HOH HOH . E 3 HOH A 21 1022 32 HOH HOH . E 3 HOH A 22 1023 35 HOH HOH . E 3 HOH A 23 1024 37 HOH HOH . E 3 HOH A 24 1025 40 HOH HOH . E 3 HOH A 25 1026 42 HOH HOH . E 3 HOH A 26 1027 43 HOH HOH . E 3 HOH A 27 1028 44 HOH HOH . E 3 HOH A 28 1029 45 HOH HOH . E 3 HOH A 29 1030 46 HOH HOH . E 3 HOH A 30 1031 47 HOH HOH . E 3 HOH A 31 1032 48 HOH HOH . E 3 HOH A 32 1033 49 HOH HOH . E 3 HOH A 33 1034 51 HOH HOH . E 3 HOH A 34 1035 52 HOH HOH . E 3 HOH A 35 1036 53 HOH HOH . E 3 HOH A 36 1037 54 HOH HOH . E 3 HOH A 37 1038 55 HOH HOH . E 3 HOH A 38 1039 58 HOH HOH . E 3 HOH A 39 1040 59 HOH HOH . E 3 HOH A 40 1041 60 HOH HOH . E 3 HOH A 41 1042 62 HOH HOH . E 3 HOH A 42 1043 63 HOH HOH . E 3 HOH A 43 1044 64 HOH HOH . E 3 HOH A 44 1045 65 HOH HOH . E 3 HOH A 45 1046 66 HOH HOH . E 3 HOH A 46 1047 67 HOH HOH . E 3 HOH A 47 1048 69 HOH HOH . E 3 HOH A 48 1049 70 HOH HOH . E 3 HOH A 49 1050 72 HOH HOH . E 3 HOH A 50 1051 73 HOH HOH . E 3 HOH A 51 1052 75 HOH HOH . E 3 HOH A 52 1053 78 HOH HOH . E 3 HOH A 53 1054 81 HOH HOH . E 3 HOH A 54 1055 83 HOH HOH . E 3 HOH A 55 1056 85 HOH HOH . E 3 HOH A 56 1057 91 HOH HOH . E 3 HOH A 57 1058 92 HOH HOH . E 3 HOH A 58 1059 93 HOH HOH . E 3 HOH A 59 1060 94 HOH HOH . E 3 HOH A 60 1061 96 HOH HOH . E 3 HOH A 61 1062 98 HOH HOH . E 3 HOH A 62 1063 101 HOH HOH . E 3 HOH A 63 1064 102 HOH HOH . E 3 HOH A 64 1065 106 HOH HOH . E 3 HOH A 65 1066 107 HOH HOH . E 3 HOH A 66 1067 108 HOH HOH . E 3 HOH A 67 1068 109 HOH HOH . E 3 HOH A 68 1069 110 HOH HOH . E 3 HOH A 69 1070 111 HOH HOH . E 3 HOH A 70 1071 112 HOH HOH . E 3 HOH A 71 1072 114 HOH HOH . E 3 HOH A 72 1073 115 HOH HOH . E 3 HOH A 73 1074 116 HOH HOH . E 3 HOH A 74 1075 119 HOH HOH . E 3 HOH A 75 1076 122 HOH HOH . E 3 HOH A 76 1077 123 HOH HOH . E 3 HOH A 77 1078 124 HOH HOH . E 3 HOH A 78 1079 127 HOH HOH . E 3 HOH A 79 1080 128 HOH HOH . E 3 HOH A 80 1081 129 HOH HOH . E 3 HOH A 81 1082 130 HOH HOH . E 3 HOH A 82 1083 131 HOH HOH . F 3 HOH B 1 1003 3 HOH HOH . F 3 HOH B 2 1004 8 HOH HOH . F 3 HOH B 3 1005 9 HOH HOH . F 3 HOH B 4 1006 10 HOH HOH . F 3 HOH B 5 1007 15 HOH HOH . F 3 HOH B 6 1008 17 HOH HOH . F 3 HOH B 7 1009 18 HOH HOH . F 3 HOH B 8 1010 20 HOH HOH . F 3 HOH B 9 1011 21 HOH HOH . F 3 HOH B 10 1012 24 HOH HOH . F 3 HOH B 11 1013 30 HOH HOH . F 3 HOH B 12 1014 33 HOH HOH . F 3 HOH B 13 1015 34 HOH HOH . F 3 HOH B 14 1016 36 HOH HOH . F 3 HOH B 15 1017 38 HOH HOH . F 3 HOH B 16 1018 39 HOH HOH . F 3 HOH B 17 1019 41 HOH HOH . F 3 HOH B 18 1020 50 HOH HOH . F 3 HOH B 19 1021 56 HOH HOH . F 3 HOH B 20 1022 57 HOH HOH . F 3 HOH B 21 1023 61 HOH HOH . F 3 HOH B 22 1024 68 HOH HOH . F 3 HOH B 23 1025 71 HOH HOH . F 3 HOH B 24 1026 74 HOH HOH . F 3 HOH B 25 1027 76 HOH HOH . F 3 HOH B 26 1028 77 HOH HOH . F 3 HOH B 27 1029 79 HOH HOH . F 3 HOH B 28 1030 80 HOH HOH . F 3 HOH B 29 1031 82 HOH HOH . F 3 HOH B 30 1032 84 HOH HOH . F 3 HOH B 31 1033 86 HOH HOH . F 3 HOH B 32 1034 87 HOH HOH . F 3 HOH B 33 1035 88 HOH HOH . F 3 HOH B 34 1036 89 HOH HOH . F 3 HOH B 35 1037 90 HOH HOH . F 3 HOH B 36 1038 95 HOH HOH . F 3 HOH B 37 1039 97 HOH HOH . F 3 HOH B 38 1040 99 HOH HOH . F 3 HOH B 39 1041 100 HOH HOH . F 3 HOH B 40 1042 103 HOH HOH . F 3 HOH B 41 1043 104 HOH HOH . F 3 HOH B 42 1044 105 HOH HOH . F 3 HOH B 43 1045 113 HOH HOH . F 3 HOH B 44 1046 117 HOH HOH . F 3 HOH B 45 1047 118 HOH HOH . F 3 HOH B 46 1048 120 HOH HOH . F 3 HOH B 47 1049 121 HOH HOH . F 3 HOH B 48 1050 125 HOH HOH . F 3 HOH B 49 1051 126 HOH HOH . F 3 HOH B 50 1052 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3P NMN . . . C 2 14.518 99.4 11.47 1 24.72 ? O3P NMN 1001 A 1 HETATM 2 P P NMN . . . C 2 14.251 98.407 10.297 1 23.76 ? P NMN 1001 A 1 HETATM 3 O O1P NMN . . . C 2 15.421 98.311 9.438 1 20.39 ? O1P NMN 1001 A 1 HETATM 4 O O2P NMN . . . C 2 13.01 98.902 9.646 1 24.53 ? O2P NMN 1001 A 1 HETATM 5 O O5R NMN . . . C 2 14.045 97.031 11.048 1 25.89 ? O5R NMN 1001 A 1 HETATM 6 C C5R NMN . . . C 2 13.062 96.94 12.144 1 28.59 ? C5R NMN 1001 A 1 HETATM 7 C C4R NMN . . . C 2 12.046 95.866 11.804 1 31.34 ? C4R NMN 1001 A 1 HETATM 8 O O4R NMN . . . C 2 11.248 95.548 12.967 1 31.88 ? O4R NMN 1001 A 1 HETATM 9 C C3R NMN . . . C 2 11.013 96.221 10.656 1 31.43 ? C3R NMN 1001 A 1 HETATM 10 O O3R NMN . . . C 2 10.952 95.173 9.679 1 31.39 ? O3R NMN 1001 A 1 HETATM 11 C C2R NMN . . . C 2 9.707 96.434 11.363 1 32.14 ? C2R NMN 1001 A 1 HETATM 12 O O2R NMN . . . C 2 8.557 96.042 10.599 1 31.18 ? O2R NMN 1001 A 1 HETATM 13 C C1R NMN . . . C 2 9.832 95.668 12.631 1 31.32 ? C1R NMN 1001 A 1 HETATM 14 N N1 NMN . . . C 2 9.139 96.315 13.768 1 29.28 ? N1 NMN 1001 A 1 HETATM 15 C C2 NMN . . . C 2 7.73 96.224 13.83 1 30.26 ? C2 NMN 1001 A 1 HETATM 16 C C3 NMN . . . C 2 7.072 96.822 14.883 1 29.71 ? C3 NMN 1001 A 1 HETATM 17 C C7 NMN . . . C 2 5.55 96.704 14.915 1 28.53 ? C7 NMN 1001 A 1 HETATM 18 O O7 NMN . . . C 2 4.996 97.231 15.838 1 29.87 ? O7 NMN 1001 A 1 HETATM 19 N N7 NMN . . . C 2 4.899 96.058 13.97 1 26.85 ? N7 NMN 1001 A 1 HETATM 20 C C4 NMN . . . C 2 7.826 97.56 15.943 1 29.91 ? C4 NMN 1001 A 1 HETATM 21 C C5 NMN . . . C 2 9.264 97.635 15.849 1 27.71 ? C5 NMN 1001 A 1 HETATM 22 C C6 NMN . . . C 2 9.95 97.016 14.762 1 28.37 ? C6 NMN 1001 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #