data_2G9K # _model_server_result.job_id fgq6rhBPz8W4PFH7VeCpbw _model_server_result.datetime_utc '2025-02-05 04:49:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g9k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 2G9K # _exptl.entry_id 2G9K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 342.432 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2',3,3',4',5-PENTACHLOROBIPHENYL-4-OL" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G9K _cell.length_a 43.081 _cell.length_b 85.461 _cell.length_c 64.237 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G9K _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 85.461 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C12 H5 Cl5 O' _chem_comp.formula_weight 342.432 _chem_comp.id NE1 _chem_comp.mon_nstd_flag . _chem_comp.name "2',3,3',4',5-PENTACHLOROBIPHENYL-4-OL" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL18 C10 NE1 sing 218 n n C10 C9 NE1 sing 219 n y C10 C11 NE1 doub 220 n y C9 CL17 NE1 sing 221 n n C9 C8 NE1 doub 222 n y C8 CL16 NE1 sing 223 n n C8 C7 NE1 sing 224 n y C11 C12 NE1 sing 225 n y C11 H11 NE1 sing 226 n n C12 C7 NE1 doub 227 n y C12 H12 NE1 sing 228 n n C7 C4 NE1 sing 229 n y C4 C3 NE1 sing 230 n y C4 C5 NE1 doub 231 n y C3 C2 NE1 doub 232 n y C3 H3 NE1 sing 233 n n C2 CL14 NE1 sing 234 n n C2 C1 NE1 sing 235 n y C5 C6 NE1 sing 236 n y C5 H5 NE1 sing 237 n n C6 CL13 NE1 sing 238 n n C6 C1 NE1 doub 239 n y C1 O15 NE1 sing 240 n n O15 HO15 NE1 sing 241 n n # _atom_sites.entry_id 2G9K _atom_sites.fract_transf_matrix[1][1] 0.023212 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011701 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015567 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NE1 A 1 501 501 NE1 NEW . D 2 NE1 B 1 500 500 NE1 NEW . E 3 HOH A 1 241 241 HOH HOH . E 3 HOH A 2 242 242 HOH HOH . E 3 HOH A 3 243 243 HOH HOH . E 3 HOH A 4 244 244 HOH HOH . E 3 HOH A 5 246 246 HOH HOH . E 3 HOH A 6 249 249 HOH HOH . E 3 HOH A 7 250 250 HOH HOH . E 3 HOH A 8 253 253 HOH HOH . E 3 HOH A 9 255 255 HOH HOH . E 3 HOH A 10 256 256 HOH HOH . E 3 HOH A 11 260 260 HOH HOH . E 3 HOH A 12 261 261 HOH HOH . E 3 HOH A 13 262 262 HOH HOH . E 3 HOH A 14 264 264 HOH HOH . E 3 HOH A 15 266 266 HOH HOH . E 3 HOH A 16 267 267 HOH HOH . E 3 HOH A 17 269 269 HOH HOH . E 3 HOH A 18 270 270 HOH HOH . E 3 HOH A 19 271 271 HOH HOH . E 3 HOH A 20 275 275 HOH HOH . E 3 HOH A 21 276 276 HOH HOH . E 3 HOH A 22 278 278 HOH HOH . E 3 HOH A 23 279 279 HOH HOH . E 3 HOH A 24 284 284 HOH HOH . E 3 HOH A 25 285 285 HOH HOH . E 3 HOH A 26 286 286 HOH HOH . E 3 HOH A 27 287 287 HOH HOH . E 3 HOH A 28 288 288 HOH HOH . E 3 HOH A 29 289 289 HOH HOH . E 3 HOH A 30 295 295 HOH HOH . F 3 HOH B 1 245 245 HOH HOH . F 3 HOH B 2 247 247 HOH HOH . F 3 HOH B 3 251 251 HOH HOH . F 3 HOH B 4 252 252 HOH HOH . F 3 HOH B 5 254 254 HOH HOH . F 3 HOH B 6 257 257 HOH HOH . F 3 HOH B 7 258 258 HOH HOH . F 3 HOH B 8 259 259 HOH HOH . F 3 HOH B 9 263 263 HOH HOH . F 3 HOH B 10 265 265 HOH HOH . F 3 HOH B 11 268 268 HOH HOH . F 3 HOH B 12 272 272 HOH HOH . F 3 HOH B 13 273 273 HOH HOH . F 3 HOH B 14 274 274 HOH HOH . F 3 HOH B 15 277 277 HOH HOH . F 3 HOH B 16 280 280 HOH HOH . F 3 HOH B 17 281 281 HOH HOH . F 3 HOH B 18 282 282 HOH HOH . F 3 HOH B 19 283 283 HOH HOH . F 3 HOH B 20 293 293 HOH HOH . F 3 HOH B 21 294 294 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL18 NE1 . . . D 2 0.158 42.849 1.513 0.5 19.63 ? CL18 NE1 500 B 1 HETATM 2 C C10 NE1 . . . D 2 0.074 42.82 3.276 0.5 19.81 ? C10 NE1 500 B 1 HETATM 3 C C9 NE1 . . . D 2 -0.763 41.923 3.969 0.5 22 ? C9 NE1 500 B 1 HETATM 4 CL CL17 NE1 . . . D 2 -1.767 40.823 3.076 0.5 23.85 ? CL17 NE1 500 B 1 HETATM 5 C C8 NE1 . . . D 2 -0.828 41.908 5.364 0.5 21.7 ? C8 NE1 500 B 1 HETATM 6 CL CL16 NE1 . . . D 2 -2.034 40.841 6.16 0.5 25.37 ? CL16 NE1 500 B 1 HETATM 7 C C11 NE1 . . . D 2 0.845 43.709 3.961 0.5 21.43 ? C11 NE1 500 B 1 HETATM 8 C C12 NE1 . . . D 2 0.79 43.704 5.348 0.5 21 ? C12 NE1 500 B 1 HETATM 9 C C7 NE1 . . . D 2 -0.034 42.797 6.094 0.5 19.92 ? C7 NE1 500 B 1 HETATM 10 C C4 NE1 . . . D 2 -0.031 42.791 7.488 0.5 20.07 ? C4 NE1 500 B 1 HETATM 11 C C3 NE1 . . . D 2 0.059 43.991 8.189 0.5 21.22 ? C3 NE1 500 B 1 HETATM 12 C C2 NE1 . . . D 2 0.082 43.983 9.578 0.5 20.14 ? C2 NE1 500 B 1 HETATM 13 CL CL14 NE1 . . . D 2 0.183 45.51 10.405 0.5 23.37 ? CL14 NE1 500 B 1 HETATM 14 C C5 NE1 . . . D 2 -0.075 41.581 8.256 0.5 21.09 ? C5 NE1 500 B 1 HETATM 15 C C6 NE1 . . . D 2 -0.052 41.573 9.646 0.5 20.1 ? C6 NE1 500 B 1 HETATM 16 CL CL13 NE1 . . . D 2 -0.108 40.034 10.558 0.5 24.02 ? CL13 NE1 500 B 1 HETATM 17 C C1 NE1 . . . D 2 0.025 42.773 10.305 0.5 20.86 ? C1 NE1 500 B 1 HETATM 18 O O15 NE1 . . . D 2 0.049 42.764 11.675 0.5 19.41 ? O15 NE1 500 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #