data_2G9X # _model_server_result.job_id fiqPhx984FFsrnUgIEpqmA _model_server_result.datetime_utc '2025-08-01 02:16:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2g9x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":299}' # _entry.id 2G9X # _exptl.entry_id 2G9X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 488.603 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-({2-[(4-{[6-(CYCLOHEXYLMETHOXY)-9H-PURIN-2-YL]AMINO}PHENYL)SULFONYL]ETHYL}AMINO)PROPAN-1-OL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2G9X _cell.length_a 74.58 _cell.length_b 134.986 _cell.length_c 148.513 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2G9X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 160 A TYR 159 1_555 A N TPO 161 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C TPO 161 A TPO 160 1_555 A N HIS 162 A HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 C C TYR 160 C TYR 159 1_555 C N TPO 161 C TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 C C TPO 161 C TPO 160 1_555 C N HIS 162 C HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C23 H32 N6 O4 S' _chem_comp.formula_weight 488.603 _chem_comp.id NU5 _chem_comp.mon_nstd_flag . _chem_comp.name 3-({2-[(4-{[6-(CYCLOHEXYLMETHOXY)-9H-PURIN-2-YL]AMINO}PHENYL)SULFONYL]ETHYL}AMINO)PROPAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 S1 NU5 doub 237 n n S1 O3 NU5 doub 238 n n S1 C22 NU5 sing 239 n n S1 C19 NU5 sing 240 n n C22 C23 NU5 sing 241 n n C22 H221 NU5 sing 242 n n C22 H222 NU5 sing 243 n n C23 N6 NU5 sing 244 n n C23 H231 NU5 sing 245 n n C23 H232 NU5 sing 246 n n N6 C24 NU5 sing 247 n n N6 HN6 NU5 sing 248 n n C24 C25 NU5 sing 249 n n C24 H241 NU5 sing 250 n n C24 H242 NU5 sing 251 n n C25 C26 NU5 sing 252 n n C25 H251 NU5 sing 253 n n C25 H252 NU5 sing 254 n n C26 O4 NU5 sing 255 n n C26 H261 NU5 sing 256 n n C26 H262 NU5 sing 257 n n O4 HO4 NU5 sing 258 n n C19 C18 NU5 sing 259 n y C19 C20 NU5 doub 260 n y C18 C17 NU5 doub 261 n y C18 H18 NU5 sing 262 n n C17 C16 NU5 sing 263 n y C17 H17 NU5 sing 264 n n C16 C21 NU5 doub 265 n y C16 N2 NU5 sing 266 n n C21 C20 NU5 sing 267 n y C21 H21 NU5 sing 268 n n C20 H20 NU5 sing 269 n n N2 C2 NU5 sing 270 n n N2 HN2 NU5 sing 271 n n C2 N1 NU5 doub 272 n y C2 N3 NU5 sing 273 n y N1 C6 NU5 sing 274 n y C6 C5 NU5 doub 275 n y C6 O6 NU5 sing 276 n n C5 N7 NU5 sing 277 n y C5 C4 NU5 sing 278 n y N7 C8 NU5 doub 279 n y C8 N9 NU5 sing 280 n y C8 H8 NU5 sing 281 n n N9 C4 NU5 sing 282 n y N9 HN9 NU5 sing 283 n n C4 N3 NU5 doub 284 n y O6 C9 NU5 sing 285 n n C9 C10 NU5 sing 286 n n C9 H91 NU5 sing 287 n n C9 H92 NU5 sing 288 n n C10 C15 NU5 sing 289 n n C10 C11 NU5 sing 290 n n C10 H10 NU5 sing 291 n n C15 C14 NU5 sing 292 n n C15 H151 NU5 sing 293 n n C15 H152 NU5 sing 294 n n C14 C13 NU5 sing 295 n n C14 H141 NU5 sing 296 n n C14 H142 NU5 sing 297 n n C13 C12 NU5 sing 298 n n C13 H131 NU5 sing 299 n n C13 H132 NU5 sing 300 n n C12 C11 NU5 sing 301 n n C12 H121 NU5 sing 302 n n C12 H122 NU5 sing 303 n n C11 H111 NU5 sing 304 n n C11 H112 NU5 sing 305 n n # _atom_sites.entry_id 2G9X _atom_sites.fract_transf_matrix[1][1] 0.013408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007408 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NU5 A 1 299 1 NU5 NU5 . F 3 NU5 C 1 299 1 NU5 NU5 . G 4 HOH A 1 300 1 HOH HOH . G 4 HOH A 2 301 4 HOH HOH . G 4 HOH A 3 302 5 HOH HOH . G 4 HOH A 4 303 14 HOH HOH . G 4 HOH A 5 304 21 HOH HOH . G 4 HOH A 6 305 25 HOH HOH . G 4 HOH A 7 306 26 HOH HOH . G 4 HOH A 8 307 30 HOH HOH . G 4 HOH A 9 308 31 HOH HOH . G 4 HOH A 10 309 37 HOH HOH . G 4 HOH A 11 310 40 HOH HOH . G 4 HOH A 12 311 41 HOH HOH . G 4 HOH A 13 312 42 HOH HOH . G 4 HOH A 14 313 46 HOH HOH . G 4 HOH A 15 314 49 HOH HOH . G 4 HOH A 16 315 50 HOH HOH . G 4 HOH A 17 316 53 HOH HOH . G 4 HOH A 18 317 56 HOH HOH . G 4 HOH A 19 318 59 HOH HOH . G 4 HOH A 20 319 64 HOH HOH . G 4 HOH A 21 320 66 HOH HOH . G 4 HOH A 22 321 67 HOH HOH . G 4 HOH A 23 322 69 HOH HOH . G 4 HOH A 24 323 71 HOH HOH . G 4 HOH A 25 324 76 HOH HOH . G 4 HOH A 26 325 77 HOH HOH . G 4 HOH A 27 326 80 HOH HOH . G 4 HOH A 28 327 82 HOH HOH . G 4 HOH A 29 328 84 HOH HOH . G 4 HOH A 30 329 86 HOH HOH . G 4 HOH A 31 330 87 HOH HOH . G 4 HOH A 32 331 95 HOH HOH . G 4 HOH A 33 332 96 HOH HOH . G 4 HOH A 34 333 99 HOH HOH . G 4 HOH A 35 334 106 HOH HOH . G 4 HOH A 36 335 109 HOH HOH . G 4 HOH A 37 336 111 HOH HOH . G 4 HOH A 38 337 112 HOH HOH . G 4 HOH A 39 338 113 HOH HOH . G 4 HOH A 40 339 120 HOH HOH . G 4 HOH A 41 340 121 HOH HOH . G 4 HOH A 42 341 124 HOH HOH . G 4 HOH A 43 342 126 HOH HOH . G 4 HOH A 44 343 129 HOH HOH . G 4 HOH A 45 344 130 HOH HOH . G 4 HOH A 46 345 132 HOH HOH . G 4 HOH A 47 346 133 HOH HOH . G 4 HOH A 48 347 136 HOH HOH . G 4 HOH A 49 348 138 HOH HOH . G 4 HOH A 50 349 141 HOH HOH . G 4 HOH A 51 350 143 HOH HOH . G 4 HOH A 52 351 145 HOH HOH . G 4 HOH A 53 352 148 HOH HOH . G 4 HOH A 54 353 152 HOH HOH . G 4 HOH A 55 354 156 HOH HOH . G 4 HOH A 56 355 157 HOH HOH . G 4 HOH A 57 356 158 HOH HOH . G 4 HOH A 58 357 164 HOH HOH . G 4 HOH A 59 358 165 HOH HOH . G 4 HOH A 60 359 166 HOH HOH . G 4 HOH A 61 360 167 HOH HOH . H 4 HOH B 1 3 3 HOH HOH . H 4 HOH B 2 6 6 HOH HOH . H 4 HOH B 3 8 8 HOH HOH . H 4 HOH B 4 13 13 HOH HOH . H 4 HOH B 5 16 16 HOH HOH . H 4 HOH B 6 19 19 HOH HOH . H 4 HOH B 7 27 27 HOH HOH . H 4 HOH B 8 28 28 HOH HOH . H 4 HOH B 9 34 34 HOH HOH . H 4 HOH B 10 35 35 HOH HOH . H 4 HOH B 11 36 36 HOH HOH . H 4 HOH B 12 38 38 HOH HOH . H 4 HOH B 13 39 39 HOH HOH . H 4 HOH B 14 43 43 HOH HOH . H 4 HOH B 15 44 44 HOH HOH . H 4 HOH B 16 45 45 HOH HOH . H 4 HOH B 17 48 48 HOH HOH . H 4 HOH B 18 51 51 HOH HOH . H 4 HOH B 19 52 52 HOH HOH . H 4 HOH B 20 60 60 HOH HOH . H 4 HOH B 21 61 61 HOH HOH . H 4 HOH B 22 62 62 HOH HOH . H 4 HOH B 23 63 63 HOH HOH . H 4 HOH B 24 65 65 HOH HOH . H 4 HOH B 25 68 68 HOH HOH . H 4 HOH B 26 81 81 HOH HOH . H 4 HOH B 27 88 88 HOH HOH . H 4 HOH B 28 91 91 HOH HOH . H 4 HOH B 29 97 97 HOH HOH . H 4 HOH B 30 101 101 HOH HOH . H 4 HOH B 31 105 105 HOH HOH . H 4 HOH B 32 115 115 HOH HOH . H 4 HOH B 33 116 116 HOH HOH . H 4 HOH B 34 117 117 HOH HOH . H 4 HOH B 35 119 119 HOH HOH . H 4 HOH B 36 122 122 HOH HOH . H 4 HOH B 37 123 123 HOH HOH . H 4 HOH B 38 131 131 HOH HOH . H 4 HOH B 39 135 135 HOH HOH . H 4 HOH B 40 140 140 HOH HOH . H 4 HOH B 41 142 142 HOH HOH . H 4 HOH B 42 144 144 HOH HOH . H 4 HOH B 43 147 147 HOH HOH . H 4 HOH B 44 149 149 HOH HOH . H 4 HOH B 45 154 154 HOH HOH . H 4 HOH B 46 155 155 HOH HOH . H 4 HOH B 47 159 159 HOH HOH . H 4 HOH B 48 160 160 HOH HOH . I 4 HOH C 1 300 2 HOH HOH . I 4 HOH C 2 301 9 HOH HOH . I 4 HOH C 3 302 11 HOH HOH . I 4 HOH C 4 303 22 HOH HOH . I 4 HOH C 5 304 23 HOH HOH . I 4 HOH C 6 305 24 HOH HOH . I 4 HOH C 7 306 32 HOH HOH . I 4 HOH C 8 307 33 HOH HOH . I 4 HOH C 9 308 57 HOH HOH . I 4 HOH C 10 309 58 HOH HOH . I 4 HOH C 11 310 73 HOH HOH . I 4 HOH C 12 311 75 HOH HOH . I 4 HOH C 13 312 79 HOH HOH . I 4 HOH C 14 313 90 HOH HOH . I 4 HOH C 15 314 93 HOH HOH . I 4 HOH C 16 315 100 HOH HOH . I 4 HOH C 17 316 102 HOH HOH . I 4 HOH C 18 317 107 HOH HOH . I 4 HOH C 19 318 108 HOH HOH . I 4 HOH C 20 319 110 HOH HOH . I 4 HOH C 21 320 114 HOH HOH . I 4 HOH C 22 321 125 HOH HOH . I 4 HOH C 23 322 128 HOH HOH . I 4 HOH C 24 323 137 HOH HOH . I 4 HOH C 25 324 139 HOH HOH . I 4 HOH C 26 325 153 HOH HOH . I 4 HOH C 27 326 161 HOH HOH . I 4 HOH C 28 327 162 HOH HOH . I 4 HOH C 29 328 163 HOH HOH . I 4 HOH C 30 329 168 HOH HOH . J 4 HOH D 1 7 7 HOH HOH . J 4 HOH D 2 12 12 HOH HOH . J 4 HOH D 3 15 15 HOH HOH . J 4 HOH D 4 17 17 HOH HOH . J 4 HOH D 5 18 18 HOH HOH . J 4 HOH D 6 20 20 HOH HOH . J 4 HOH D 7 54 54 HOH HOH . J 4 HOH D 8 55 55 HOH HOH . J 4 HOH D 9 70 70 HOH HOH . J 4 HOH D 10 72 72 HOH HOH . J 4 HOH D 11 78 78 HOH HOH . J 4 HOH D 12 83 83 HOH HOH . J 4 HOH D 13 85 85 HOH HOH . J 4 HOH D 14 89 89 HOH HOH . J 4 HOH D 15 92 92 HOH HOH . J 4 HOH D 16 94 94 HOH HOH . J 4 HOH D 17 103 103 HOH HOH . J 4 HOH D 18 104 104 HOH HOH . J 4 HOH D 19 118 118 HOH HOH . J 4 HOH D 20 127 127 HOH HOH . J 4 HOH D 21 134 134 HOH HOH . J 4 HOH D 22 146 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 NU5 . . . F 3 -33.426 25.511 30.392 1 6.48 ? O2 NU5 299 C 1 HETATM 2 S S1 NU5 . . . F 3 -33.744 24.371 31.207 1 7.85 ? S1 NU5 299 C 1 HETATM 3 O O3 NU5 . . . F 3 -35.156 24.442 31.481 1 6.59 ? O3 NU5 299 C 1 HETATM 4 C C22 NU5 . . . F 3 -32.86 24.363 32.625 1 10 ? C22 NU5 299 C 1 HETATM 5 C C23 NU5 . . . F 3 -33.693 24.827 33.813 1 12.3 ? C23 NU5 299 C 1 HETATM 6 N N6 NU5 . . . F 3 -34.701 23.848 34.187 1 14.19 ? N6 NU5 299 C 1 HETATM 7 C C24 NU5 . . . F 3 -35.289 23.916 35.518 1 15.75 ? C24 NU5 299 C 1 HETATM 8 C C25 NU5 . . . F 3 -36.796 24.177 35.503 1 16.48 ? C25 NU5 299 C 1 HETATM 9 C C26 NU5 . . . F 3 -37.11 25.625 35.136 1 17.02 ? C26 NU5 299 C 1 HETATM 10 O O4 NU5 . . . F 3 -38.145 25.635 34.137 1 16.88 ? O4 NU5 299 C 1 HETATM 11 C C19 NU5 . . . F 3 -33.505 23.003 30.397 1 7.59 ? C19 NU5 299 C 1 HETATM 12 C C18 NU5 . . . F 3 -33.016 23.016 29.096 1 7.26 ? C18 NU5 299 C 1 HETATM 13 C C17 NU5 . . . F 3 -32.851 21.826 28.398 1 7.28 ? C17 NU5 299 C 1 HETATM 14 C C16 NU5 . . . F 3 -33.171 20.596 28.967 1 7.54 ? C16 NU5 299 C 1 HETATM 15 C C21 NU5 . . . F 3 -33.669 20.586 30.269 1 7.38 ? C21 NU5 299 C 1 HETATM 16 C C20 NU5 . . . F 3 -33.832 21.777 30.976 1 7.45 ? C20 NU5 299 C 1 HETATM 17 N N2 NU5 . . . F 3 -32.988 19.462 28.228 1 7.2 ? N2 NU5 299 C 1 HETATM 18 C C2 NU5 . . . F 3 -33.238 18.195 28.63 1 7.01 ? C2 NU5 299 C 1 HETATM 19 N N1 NU5 . . . F 3 -33.711 17.944 29.881 1 7.22 ? N1 NU5 299 C 1 HETATM 20 C C6 NU5 . . . F 3 -33.969 16.682 30.309 1 7.57 ? C6 NU5 299 C 1 HETATM 21 C C5 NU5 . . . F 3 -33.733 15.556 29.394 1 7.3 ? C5 NU5 299 C 1 HETATM 22 N N7 NU5 . . . F 3 -33.877 14.228 29.476 1 7 ? N7 NU5 299 C 1 HETATM 23 C C8 NU5 . . . F 3 -33.482 13.737 28.284 1 7.39 ? C8 NU5 299 C 1 HETATM 24 N N9 NU5 . . . F 3 -33.092 14.726 27.435 1 7.44 ? N9 NU5 299 C 1 HETATM 25 C C4 NU5 . . . F 3 -33.225 15.894 28.061 1 7.28 ? C4 NU5 299 C 1 HETATM 26 N N3 NU5 . . . F 3 -32.998 17.196 27.744 1 7.13 ? N3 NU5 299 C 1 HETATM 27 O O6 NU5 . . . F 3 -34.45 16.391 31.549 1 7.46 ? O6 NU5 299 C 1 HETATM 28 C C9 NU5 . . . F 3 -33.828 16.903 32.723 1 6.51 ? C9 NU5 299 C 1 HETATM 29 C C10 NU5 . . . F 3 -34.988 17.476 33.549 1 5.69 ? C10 NU5 299 C 1 HETATM 30 C C15 NU5 . . . F 3 -36.167 16.477 33.602 1 4.05 ? C15 NU5 299 C 1 HETATM 31 C C14 NU5 . . . F 3 -36.726 16.118 34.97 1 4.16 ? C14 NU5 299 C 1 HETATM 32 C C13 NU5 . . . F 3 -36.477 17.202 36.005 1 4.33 ? C13 NU5 299 C 1 HETATM 33 C C12 NU5 . . . F 3 -34.981 17.437 36.11 1 5.09 ? C12 NU5 299 C 1 HETATM 34 C C11 NU5 . . . F 3 -34.486 18.131 34.851 1 5.69 ? C11 NU5 299 C 1 # _model_server_stats.io_time_ms 117 _model_server_stats.parse_time_ms 58 _model_server_stats.create_model_time_ms 103 _model_server_stats.query_time_ms 1577 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 34 #