data_2GB8
#
_model_server_result.job_id            ZsStt_fcp92GLq4xOrQsvw 
_model_server_result.datetime_utc      '2024-12-26 18:51:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2gb8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":104}' 
#
_entry.id    2GB8 
#
_exptl.entry_id    2GB8 
_exptl.method      'SOLUTION NMR' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2GB8 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2GB8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B SG CYS 19 B CYS 14 1_555 D CAB HEC . B HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
covale ? covale2 B SG CYS 22 B CYS 17 1_555 D CAC HEC . B HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 C FE HEM . A HEM 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc2 B NE2 HIS 23 B HIS 18 1_555 D FE HEC . B HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? 
metalc ? metalc3 B SD MET 85 B MET 80 1_555 D FE HEC . B HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 129 n n 
FE NB HEC sing 130 n n 
FE NC HEC sing 131 n n 
FE ND HEC sing 132 n n 
CHA C1A HEC doub 133 n n 
CHA C4D HEC sing 134 n n 
CHA HHA HEC sing 135 n n 
CHB C4A HEC doub 136 n n 
CHB C1B HEC sing 137 n n 
CHB HHB HEC sing 138 n n 
CHC C4B HEC doub 139 n n 
CHC C1C HEC sing 140 n n 
CHC HHC HEC sing 141 n n 
CHD C4C HEC doub 142 n n 
CHD C1D HEC sing 143 n n 
CHD HHD HEC sing 144 n n 
NA C1A HEC sing 145 n y 
NA C4A HEC sing 146 n y 
C1A C2A HEC sing 147 n y 
C2A C3A HEC doub 148 n y 
C2A CAA HEC sing 149 n n 
C3A C4A HEC sing 150 n y 
C3A CMA HEC sing 151 n n 
CMA HMA1 HEC sing 152 n n 
CMA HMA2 HEC sing 153 n n 
CMA HMA3 HEC sing 154 n n 
CAA CBA HEC sing 155 n n 
CAA HAA1 HEC sing 156 n n 
CAA HAA2 HEC sing 157 n n 
CBA CGA HEC sing 158 n n 
CBA HBA1 HEC sing 159 n n 
CBA HBA2 HEC sing 160 n n 
CGA O1A HEC doub 161 n n 
CGA O2A HEC sing 162 n n 
O2A H2A HEC sing 163 n n 
NB C1B HEC sing 164 n y 
NB C4B HEC sing 165 n y 
C1B C2B HEC doub 166 n y 
C2B C3B HEC sing 167 n y 
C2B CMB HEC sing 168 n n 
C3B C4B HEC sing 169 n y 
C3B CAB HEC doub 170 e n 
CMB HMB1 HEC sing 171 n n 
CMB HMB2 HEC sing 172 n n 
CMB HMB3 HEC sing 173 n n 
CAB CBB HEC sing 174 n n 
CAB HAB HEC sing 175 n n 
CBB HBB1 HEC sing 176 n n 
CBB HBB2 HEC sing 177 n n 
CBB HBB3 HEC sing 178 n n 
NC C1C HEC sing 179 n y 
NC C4C HEC sing 180 n y 
C1C C2C HEC doub 181 n y 
C2C C3C HEC sing 182 n y 
C2C CMC HEC sing 183 n n 
C3C C4C HEC sing 184 n y 
C3C CAC HEC doub 185 e n 
CMC HMC1 HEC sing 186 n n 
CMC HMC2 HEC sing 187 n n 
CMC HMC3 HEC sing 188 n n 
CAC CBC HEC sing 189 n n 
CAC HAC HEC sing 190 n n 
CBC HBC1 HEC sing 191 n n 
CBC HBC2 HEC sing 192 n n 
CBC HBC3 HEC sing 193 n n 
ND C1D HEC sing 194 n y 
ND C4D HEC sing 195 n y 
C1D C2D HEC doub 196 n y 
C2D C3D HEC sing 197 n y 
C2D CMD HEC sing 198 n n 
C3D C4D HEC doub 199 n y 
C3D CAD HEC sing 200 n n 
CMD HMD1 HEC sing 201 n n 
CMD HMD2 HEC sing 202 n n 
CMD HMD3 HEC sing 203 n n 
CAD CBD HEC sing 204 n n 
CAD HAD1 HEC sing 205 n n 
CAD HAD2 HEC sing 206 n n 
CBD CGD HEC sing 207 n n 
CBD HBD1 HEC sing 208 n n 
CBD HBD2 HEC sing 209 n n 
CGD O1D HEC doub 210 n n 
CGD O2D HEC sing 211 n n 
O2D H2D HEC sing 212 n n 
#
_atom_sites.entry_id                     2GB8 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HEM A 1 295 295 HEM HEM . 
D 4 HEC B 1 104 104 HEC HEC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . D 4 13.581 15.771 29.55 1 25.96 ? FE HEC 104 B 1 
HETATM 2 C CHA HEC . . . D 4 14.168 12.491 28.616 1 31.5 ? CHA HEC 104 B 1 
HETATM 3 C CHB HEC . . . D 4 15.946 15.613 31.847 1 31.85 ? CHB HEC 104 B 1 
HETATM 4 C CHC HEC . . . D 4 13.244 19.131 30.004 1 30.51 ? CHC HEC 104 B 1 
HETATM 5 C CHD HEC . . . D 4 10.536 15.673 28.004 1 30.63 ? CHD HEC 104 B 1 
HETATM 6 N NA HEC . . . D 4 14.845 14.315 30.125 1 30.48 ? NA HEC 104 B 1 
HETATM 7 C C1A HEC . . . D 4 14.986 13.056 29.571 1 30.36 ? C1A HEC 104 B 1 
HETATM 8 C C2A HEC . . . D 4 16.133 12.44 30.158 1 33.22 ? C2A HEC 104 B 1 
HETATM 9 C C3A HEC . . . D 4 16.653 13.27 31.072 1 33.32 ? C3A HEC 104 B 1 
HETATM 10 C C4A HEC . . . D 4 15.831 14.448 31.083 1 30.96 ? C4A HEC 104 B 1 
HETATM 11 C CMA HEC . . . D 4 17.902 13.039 31.966 1 32.16 ? CMA HEC 104 B 1 
HETATM 12 C CAA HEC . . . D 4 16.563 10.976 29.806 1 31.48 ? CAA HEC 104 B 1 
HETATM 13 C CBA HEC . . . D 4 15.675 10.016 30.669 1 31.28 ? CBA HEC 104 B 1 
HETATM 14 C CGA HEC . . . D 4 16.21 8.604 30.637 1 33.27 ? CGA HEC 104 B 1 
HETATM 15 O O1A HEC . . . D 4 15.596 7.75 31.335 1 35.01 ? O1A HEC 104 B 1 
HETATM 16 O O2A HEC . . . D 4 17.163 8.44 29.836 1 30.92 ? O2A HEC 104 B 1 
HETATM 17 N NB HEC . . . D 4 14.368 17.104 30.765 1 28.05 ? NB HEC 104 B 1 
HETATM 18 C C1B HEC . . . D 4 15.432 16.881 31.616 1 29.43 ? C1B HEC 104 B 1 
HETATM 19 C C2B HEC . . . D 4 15.89 18.142 32.139 1 29.37 ? C2B HEC 104 B 1 
HETATM 20 C C3B HEC . . . D 4 15.128 19.107 31.61 1 27.68 ? C3B HEC 104 B 1 
HETATM 21 C C4B HEC . . . D 4 14.197 18.469 30.719 1 28.11 ? C4B HEC 104 B 1 
HETATM 22 C CMB HEC . . . D 4 17.032 18.231 33.147 1 27.21 ? CMB HEC 104 B 1 
HETATM 23 C CAB HEC . . . D 4 15.199 20.614 31.722 1 28.86 ? CAB HEC 104 B 1 
HETATM 24 C CBB HEC . . . D 4 16.287 21.368 31.925 1 28.41 ? CBB HEC 104 B 1 
HETATM 25 N NC HEC . . . D 4 12.111 17.143 29.17 1 31.31 ? NC HEC 104 B 1 
HETATM 26 C C1C HEC . . . D 4 12.22 18.489 29.346 1 31.13 ? C1C HEC 104 B 1 
HETATM 27 C C2C HEC . . . D 4 11.137 19.144 28.642 1 32.51 ? C2C HEC 104 B 1 
HETATM 28 C C3C HEC . . . D 4 10.391 18.208 28.092 1 31.78 ? C3C HEC 104 B 1 
HETATM 29 C C4C HEC . . . D 4 10.981 16.929 28.425 1 30.93 ? C4C HEC 104 B 1 
HETATM 30 C CMC HEC . . . D 4 10.979 20.702 28.647 1 34.92 ? CMC HEC 104 B 1 
HETATM 31 C CAC HEC . . . D 4 9.135 18.316 27.173 1 30.02 ? CAC HEC 104 B 1 
HETATM 32 C CBC HEC . . . D 4 8.742 19.48 26.694 1 29.47 ? CBC HEC 104 B 1 
HETATM 33 N ND HEC . . . D 4 12.527 14.373 28.567 1 30.8 ? ND HEC 104 B 1 
HETATM 34 C C1D HEC . . . D 4 11.328 14.565 27.893 1 30.61 ? C1D HEC 104 B 1 
HETATM 35 C C2D HEC . . . D 4 11.058 13.41 27.081 1 32.98 ? C2D HEC 104 B 1 
HETATM 36 C C3D HEC . . . D 4 12.043 12.512 27.337 1 31.46 ? C3D HEC 104 B 1 
HETATM 37 C C4D HEC . . . D 4 12.993 13.109 28.197 1 31.38 ? C4D HEC 104 B 1 
HETATM 38 C CMD HEC . . . D 4 9.779 13.225 26.232 1 31.94 ? CMD HEC 104 B 1 
HETATM 39 C CAD HEC . . . D 4 12.234 11.122 26.669 1 29.17 ? CAD HEC 104 B 1 
HETATM 40 C CBD HEC . . . D 4 12.763 11.393 25.254 1 27.54 ? CBD HEC 104 B 1 
HETATM 41 C CGD HEC . . . D 4 12.892 10.212 24.349 1 27.25 ? CGD HEC 104 B 1 
HETATM 42 O O1D HEC . . . D 4 12.353 9.167 24.728 1 24.44 ? O1D HEC 104 B 1 
HETATM 43 O O2D HEC . . . D 4 13.537 10.513 23.319 1 29.33 ? O2D HEC 104 B 1 
HETATM 44 H HHA HEC . . . D 4 14.607 11.758 27.956 1 0 ? HHA HEC 104 B 1 
HETATM 45 H HHB HEC . . . D 4 16.518 15.509 32.757 1 0 ? HHB HEC 104 B 1 
HETATM 46 H HHC HEC . . . D 4 13.458 20.15 29.716 1 0 ? HHC HEC 104 B 1 
HETATM 47 H HHD HEC . . . D 4 9.47 15.533 27.902 1 0 ? HHD HEC 104 B 1 
HETATM 48 H HMA1 HEC . . . D 4 18.177 11.995 31.938 1 0 ? HMA1 HEC 104 B 1 
HETATM 49 H HMA2 HEC . . . D 4 17.675 13.325 32.983 1 0 ? HMA2 HEC 104 B 1 
HETATM 50 H HMA3 HEC . . . D 4 18.723 13.637 31.599 1 0 ? HMA3 HEC 104 B 1 
HETATM 51 H HAA1 HEC . . . D 4 17.606 10.831 30.048 1 0 ? HAA1 HEC 104 B 1 
HETATM 52 H HAA2 HEC . . . D 4 16.399 10.786 28.756 1 0 ? HAA2 HEC 104 B 1 
HETATM 53 H HBA1 HEC . . . D 4 14.667 10.022 30.281 1 0 ? HBA1 HEC 104 B 1 
HETATM 54 H HBA2 HEC . . . D 4 15.663 10.367 31.69 1 0 ? HBA2 HEC 104 B 1 
HETATM 55 H HMB1 HEC . . . D 4 17.721 17.415 32.984 1 0 ? HMB1 HEC 104 B 1 
HETATM 56 H HMB2 HEC . . . D 4 16.633 18.171 34.149 1 0 ? HMB2 HEC 104 B 1 
HETATM 57 H HMB3 HEC . . . D 4 17.551 19.17 33.022 1 0 ? HMB3 HEC 104 B 1 
HETATM 58 H HAB HEC . . . D 4 14.495 21.101 31.065 1 0 ? HAB HEC 104 B 1 
HETATM 59 H HBB1 HEC . . . D 4 16.85 20.972 32.757 1 0 ? HBB1 HEC 104 B 1 
HETATM 60 H HBB2 HEC . . . D 4 15.987 22.382 32.143 1 0 ? HBB2 HEC 104 B 1 
HETATM 61 H HBB3 HEC . . . D 4 16.902 21.358 31.037 1 0 ? HBB3 HEC 104 B 1 
HETATM 62 H HMC1 HEC . . . D 4 11.327 21.097 29.59 1 0 ? HMC1 HEC 104 B 1 
HETATM 63 H HMC2 HEC . . . D 4 9.939 20.959 28.512 1 0 ? HMC2 HEC 104 B 1 
HETATM 64 H HMC3 HEC . . . D 4 11.562 21.125 27.842 1 0 ? HMC3 HEC 104 B 1 
HETATM 65 H HAC HEC . . . D 4 8.808 17.422 26.662 1 0 ? HAC HEC 104 B 1 
HETATM 66 H HBC1 HEC . . . D 4 8.404 20.109 27.504 1 0 ? HBC1 HEC 104 B 1 
HETATM 67 H HBC2 HEC . . . D 4 7.934 19.326 25.995 1 0 ? HBC2 HEC 104 B 1 
HETATM 68 H HBC3 HEC . . . D 4 9.568 19.958 26.188 1 0 ? HBC3 HEC 104 B 1 
HETATM 69 H HMD1 HEC . . . D 4 9.897 13.734 25.287 1 0 ? HMD1 HEC 104 B 1 
HETATM 70 H HMD2 HEC . . . D 4 8.933 13.637 26.76 1 0 ? HMD2 HEC 104 B 1 
HETATM 71 H HMD3 HEC . . . D 4 9.616 12.174 26.056 1 0 ? HMD3 HEC 104 B 1 
HETATM 72 H HAD1 HEC . . . D 4 11.288 10.602 26.618 1 0 ? HAD1 HEC 104 B 1 
HETATM 73 H HAD2 HEC . . . D 4 12.95 10.536 27.227 1 0 ? HAD2 HEC 104 B 1 
HETATM 74 H HBD1 HEC . . . D 4 13.737 11.851 25.346 1 0 ? HBD1 HEC 104 B 1 
HETATM 75 H HBD2 HEC . . . D 4 12.101 12.104 24.781 1 0 ? HBD2 HEC 104 B 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    484 
_model_server_stats.query_time_ms           6606 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           75 
#