data_2GB8
#
_model_server_result.job_id            KKwI6jnVJjLovlX2hEHV2A 
_model_server_result.datetime_utc      '2024-12-26 18:17:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2gb8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":295}' 
#
_entry.id    2GB8 
#
_exptl.entry_id    2GB8 
_exptl.method      'SOLUTION NMR' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2GB8 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2GB8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B SG CYS 19 B CYS 14 1_555 D CAB HEC . B HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
covale ? covale2 B SG CYS 22 B CYS 17 1_555 D CAC HEC . B HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 C FE HEM . A HEM 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc2 B NE2 HIS 23 B HIS 18 1_555 D FE HEC . B HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? 
metalc ? metalc3 B SD MET 85 B MET 80 1_555 D FE HEC . B HEC 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 213 n n 
CHA C4D HEM doub 214 n n 
CHA HHA HEM sing 215 n n 
CHB C4A HEM sing 216 n n 
CHB C1B HEM doub 217 n n 
CHB HHB HEM sing 218 n n 
CHC C4B HEM sing 219 n n 
CHC C1C HEM doub 220 n n 
CHC HHC HEM sing 221 n n 
CHD C4C HEM doub 222 n n 
CHD C1D HEM sing 223 n n 
CHD HHD HEM sing 224 n n 
C1A C2A HEM doub 225 n y 
C1A NA HEM sing 226 n y 
C2A C3A HEM sing 227 n y 
C2A CAA HEM sing 228 n n 
C3A C4A HEM doub 229 n y 
C3A CMA HEM sing 230 n n 
C4A NA HEM sing 231 n y 
CMA HMA HEM sing 232 n n 
CMA HMAA HEM sing 233 n n 
CMA HMAB HEM sing 234 n n 
CAA CBA HEM sing 235 n n 
CAA HAA HEM sing 236 n n 
CAA HAAA HEM sing 237 n n 
CBA CGA HEM sing 238 n n 
CBA HBA HEM sing 239 n n 
CBA HBAA HEM sing 240 n n 
CGA O1A HEM doub 241 n n 
CGA O2A HEM sing 242 n n 
C1B C2B HEM sing 243 n n 
C1B NB HEM sing 244 n n 
C2B C3B HEM doub 245 n n 
C2B CMB HEM sing 246 n n 
C3B C4B HEM sing 247 n n 
C3B CAB HEM sing 248 n n 
C4B NB HEM doub 249 n n 
CMB HMB HEM sing 250 n n 
CMB HMBA HEM sing 251 n n 
CMB HMBB HEM sing 252 n n 
CAB CBB HEM doub 253 n n 
CAB HAB HEM sing 254 n n 
CBB HBB HEM sing 255 n n 
CBB HBBA HEM sing 256 n n 
C1C C2C HEM sing 257 n y 
C1C NC HEM sing 258 n y 
C2C C3C HEM doub 259 n y 
C2C CMC HEM sing 260 n n 
C3C C4C HEM sing 261 n y 
C3C CAC HEM sing 262 n n 
C4C NC HEM sing 263 n y 
CMC HMC HEM sing 264 n n 
CMC HMCA HEM sing 265 n n 
CMC HMCB HEM sing 266 n n 
CAC CBC HEM doub 267 n n 
CAC HAC HEM sing 268 n n 
CBC HBC HEM sing 269 n n 
CBC HBCA HEM sing 270 n n 
C1D C2D HEM sing 271 n n 
C1D ND HEM doub 272 n n 
C2D C3D HEM doub 273 n n 
C2D CMD HEM sing 274 n n 
C3D C4D HEM sing 275 n n 
C3D CAD HEM sing 276 n n 
C4D ND HEM sing 277 n n 
CMD HMD HEM sing 278 n n 
CMD HMDA HEM sing 279 n n 
CMD HMDB HEM sing 280 n n 
CAD CBD HEM sing 281 n n 
CAD HAD HEM sing 282 n n 
CAD HADA HEM sing 283 n n 
CBD CGD HEM sing 284 n n 
CBD HBD HEM sing 285 n n 
CBD HBDA HEM sing 286 n n 
CGD O1D HEM doub 287 n n 
CGD O2D HEM sing 288 n n 
O2A H2A HEM sing 289 n n 
O2D H2D HEM sing 290 n n 
FE NA HEM sing 291 n n 
FE NB HEM sing 292 n n 
FE NC HEM sing 293 n n 
FE ND HEM sing 294 n n 
#
_atom_sites.entry_id                     2GB8 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HEM A 1 295 295 HEM HEM . 
D 4 HEC B 1 104 104 HEC HEC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 -0.51 33.431 21.867 1 17.46 ? CHA HEM 295 A 1 
HETATM 2 C CHB HEM . . . C 3 -4.835 33.711 19.68 1 17.44 ? CHB HEM 295 A 1 
HETATM 3 C CHC HEM . . . C 3 -2.861 32.955 15.358 1 18.66 ? CHC HEM 295 A 1 
HETATM 4 C CHD HEM . . . C 3 1.525 33.075 17.511 1 15.09 ? CHD HEM 295 A 1 
HETATM 5 C C1A HEM . . . C 3 -1.844 33.577 21.596 1 19.87 ? C1A HEM 295 A 1 
HETATM 6 C C2A HEM . . . C 3 -2.836 33.872 22.613 1 18.41 ? C2A HEM 295 A 1 
HETATM 7 C C3A HEM . . . C 3 -4.013 33.991 22.043 1 17.4 ? C3A HEM 295 A 1 
HETATM 8 C C4A HEM . . . C 3 -3.835 33.7 20.632 1 19.52 ? C4A HEM 295 A 1 
HETATM 9 C CMA HEM . . . C 3 -5.417 34.31 22.66 1 15.6 ? CMA HEM 295 A 1 
HETATM 10 C CAA HEM . . . C 3 -2.37 34.114 24.089 1 16.86 ? CAA HEM 295 A 1 
HETATM 11 C CBA HEM . . . C 3 -2.192 35.555 24.495 1 9.9 ? CBA HEM 295 A 1 
HETATM 12 C CGA HEM . . . C 3 -1.615 35.789 25.858 1 12.22 ? CGA HEM 295 A 1 
HETATM 13 O O1A HEM . . . C 3 -2.174 35.402 26.914 1 11.86 ? O1A HEM 295 A 1 
HETATM 14 O O2A HEM . . . C 3 -0.527 36.423 25.876 1 16.51 ? O2A HEM 295 A 1 
HETATM 15 C C1B HEM . . . C 3 -4.714 33.571 18.303 1 19.15 ? C1B HEM 295 A 1 
HETATM 16 C C2B HEM . . . C 3 -5.803 33.518 17.317 1 18.37 ? C2B HEM 295 A 1 
HETATM 17 C C3B HEM . . . C 3 -5.264 33.312 16.153 1 18.1 ? C3B HEM 295 A 1 
HETATM 18 C C4B HEM . . . C 3 -3.837 33.202 16.342 1 17.04 ? C4B HEM 295 A 1 
HETATM 19 C CMB HEM . . . C 3 -7.297 33.694 17.745 1 14.89 ? CMB HEM 295 A 1 
HETATM 20 C CAB HEM . . . C 3 -5.945 33.184 14.763 1 17.24 ? CAB HEM 295 A 1 
HETATM 21 C CBB HEM . . . C 3 -7.053 32.498 14.57 1 16.86 ? CBB HEM 295 A 1 
HETATM 22 C C1C HEM . . . C 3 -1.466 32.983 15.59 1 20.16 ? C1C HEM 295 A 1 
HETATM 23 C C2C HEM . . . C 3 -0.477 32.992 14.538 1 19.58 ? C2C HEM 295 A 1 
HETATM 24 C C3C HEM . . . C 3 0.75 33.024 15.092 1 19.65 ? C3C HEM 295 A 1 
HETATM 25 C C4C HEM . . . C 3 0.53 33.086 16.562 1 21.58 ? C4C HEM 295 A 1 
HETATM 26 C CMC HEM . . . C 3 -0.852 32.984 13.05 1 20.62 ? CMC HEM 295 A 1 
HETATM 27 C CAC HEM . . . C 3 2.095 33.097 14.519 1 17.81 ? CAC HEM 295 A 1 
HETATM 28 C CBC HEM . . . C 3 2.832 32.997 13.494 1 18.9 ? CBC HEM 295 A 1 
HETATM 29 C C1D HEM . . . C 3 1.36 33.007 18.884 1 19.05 ? C1D HEM 295 A 1 
HETATM 30 C C2D HEM . . . C 3 2.398 32.745 19.902 1 19.72 ? C2D HEM 295 A 1 
HETATM 31 C C3D HEM . . . C 3 1.821 32.885 21.073 1 18.72 ? C3D HEM 295 A 1 
HETATM 32 C C4D HEM . . . C 3 0.436 33.26 20.875 1 17.55 ? C4D HEM 295 A 1 
HETATM 33 C CMD HEM . . . C 3 3.861 32.441 19.502 1 13.89 ? CMD HEM 295 A 1 
HETATM 34 C CAD HEM . . . C 3 2.472 32.76 22.483 1 20.17 ? CAD HEM 295 A 1 
HETATM 35 C CBD HEM . . . C 3 2.881 34.144 23.079 1 20.48 ? CBD HEM 295 A 1 
HETATM 36 C CGD HEM . . . C 3 3.469 34.125 24.464 1 20.61 ? CGD HEM 295 A 1 
HETATM 37 O O1D HEM . . . C 3 3.483 35.224 25.067 1 24.08 ? O1D HEM 295 A 1 
HETATM 38 O O2D HEM . . . C 3 3.938 33.037 24.858 1 19.07 ? O2D HEM 295 A 1 
HETATM 39 N NA HEM . . . C 3 -2.502 33.414 20.369 1 18.04 ? NA HEM 295 A 1 
HETATM 40 N NB HEM . . . C 3 -3.532 33.308 17.687 1 20.46 ? NB HEM 295 A 1 
HETATM 41 N NC HEM . . . C 3 -0.853 33.052 16.855 1 17.14 ? NC HEM 295 A 1 
HETATM 42 N ND HEM . . . C 3 0.16 33.28 19.542 1 19.77 ? ND HEM 295 A 1 
HETATM 43 FE FE HEM . . . C 3 -1.679 33.021 18.64 1 17.31 ? FE HEM 295 A 1 
HETATM 44 H HHB HEM . . . C 3 -5.84 33.841 20.054 1 0 ? HHB HEM 295 A 1 
HETATM 45 H HHC HEM . . . C 3 -3.199 32.558 14.412 1 0 ? HHC HEM 295 A 1 
HETATM 46 H HHD HEM . . . C 3 2.515 32.843 17.159 1 0 ? HHD HEM 295 A 1 
HETATM 47 H HAB HEM . . . C 3 -5.496 33.723 13.927 1 0 ? HAB HEM 295 A 1 
HETATM 48 H HAC HEM . . . C 3 2.733 33.469 15.321 1 0 ? HAC HEM 295 A 1 
HETATM 49 H HHA HEM . . . C 3 -0.235 33.142 22.87 1 0 ? HHA HEM 295 A 1 
HETATM 50 H HMA1 HEM . . . C 3 -6.015 33.411 22.679 1 0 ? HMA1 HEM 295 A 1 
HETATM 51 H HMA2 HEM . . . C 3 -5.912 35.059 22.06 1 0 ? HMA2 HEM 295 A 1 
HETATM 52 H HMA3 HEM . . . C 3 -5.292 34.68 23.667 1 0 ? HMA3 HEM 295 A 1 
HETATM 53 H HAA1 HEM . . . C 3 -1.429 33.605 24.235 1 0 ? HAA1 HEM 295 A 1 
HETATM 54 H HAA2 HEM . . . C 3 -3.101 33.668 24.748 1 0 ? HAA2 HEM 295 A 1 
HETATM 55 H HBA1 HEM . . . C 3 -3.158 36.036 24.453 1 0 ? HBA1 HEM 295 A 1 
HETATM 56 H HBA2 HEM . . . C 3 -1.547 36.029 23.77 1 0 ? HBA2 HEM 295 A 1 
HETATM 57 H HMB1 HEM . . . C 3 -7.703 32.737 18.036 1 0 ? HMB1 HEM 295 A 1 
HETATM 58 H HMB2 HEM . . . C 3 -7.865 34.089 16.916 1 0 ? HMB2 HEM 295 A 1 
HETATM 59 H HMB3 HEM . . . C 3 -7.355 34.378 18.579 1 0 ? HMB3 HEM 295 A 1 
HETATM 60 H HBB1 HEM . . . C 3 -7.516 32.446 13.585 1 0 ? HBB1 HEM 295 A 1 
HETATM 61 H HBB2 HEM . . . C 3 -7.512 31.967 15.392 1 0 ? HBB2 HEM 295 A 1 
HETATM 62 H HMC1 HEM . . . C 3 -1.757 33.554 12.903 1 0 ? HMC1 HEM 295 A 1 
HETATM 63 H HMC2 HEM . . . C 3 -1.011 31.967 12.724 1 0 ? HMC2 HEM 295 A 1 
HETATM 64 H HMC3 HEM . . . C 3 -0.052 33.425 12.474 1 0 ? HMC3 HEM 295 A 1 
HETATM 65 H HBC1 HEM . . . C 3 3.927 33.174 13.489 1 0 ? HBC1 HEM 295 A 1 
HETATM 66 H HBC2 HEM . . . C 3 2.369 32.693 12.565 1 0 ? HBC2 HEM 295 A 1 
HETATM 67 H HMD1 HEM . . . C 3 4.353 33.358 19.211 1 0 ? HMD1 HEM 295 A 1 
HETATM 68 H HMD2 HEM . . . C 3 3.872 31.748 18.673 1 0 ? HMD2 HEM 295 A 1 
HETATM 69 H HMD3 HEM . . . C 3 4.381 32.005 20.342 1 0 ? HMD3 HEM 295 A 1 
HETATM 70 H HAD1 HEM . . . C 3 3.353 32.14 22.406 1 0 ? HAD1 HEM 295 A 1 
HETATM 71 H HAD2 HEM . . . C 3 1.769 32.286 23.152 1 0 ? HAD2 HEM 295 A 1 
HETATM 72 H HBD1 HEM . . . C 3 2.003 34.773 23.096 1 0 ? HBD1 HEM 295 A 1 
HETATM 73 H HBD2 HEM . . . C 3 3.604 34.594 22.415 1 0 ? HBD2 HEM 295 A 1 
#
_model_server_stats.io_time_ms              140 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    133 
_model_server_stats.query_time_ms           4877 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           73 
#