data_2GBC # _model_server_result.job_id Ip7Wy3wMPLD35ODLe-AC7g _model_server_result.datetime_utc '2024-11-21 17:43:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gbc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1090}' # _entry.id 2GBC # _exptl.entry_id 2GBC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GBC _cell.length_a 208.152 _cell.length_b 208.152 _cell.length_c 208.152 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GBC _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_454 -z-1/2,-x,y-1/2 0 0 -1 -1 0 0 0 1 0 -104.076 0 -104.076 3 'crystal symmetry operation' 10_554 -y,z+1/2,-x-1/2 0 -1 0 0 0 1 -1 0 0 0 104.076 -104.076 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 289 A CYS 326 1_555 A SG CYS 300 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 346 A CYS 383 1_555 A SG CYS 358 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 408 A CYS 445 1_555 A SG CYS 411 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 418 A CYS 455 1_555 A SG CYS 436 A CYS 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 613 A CYS 650 1_555 A SG CYS 726 A CYS 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 B SG CYS 289 B CYS 326 1_555 B SG CYS 300 B CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf7 B SG CYS 346 B CYS 383 1_555 B SG CYS 358 B CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 B SG CYS 408 B CYS 445 1_555 B SG CYS 411 B CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 B SG CYS 418 B CYS 455 1_555 B SG CYS 436 B CYS 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 B SG CYS 613 B CYS 650 1_555 B SG CYS 726 B CYS 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 46 A ASN 83 1_555 C C1 NAG . A NAG 1083 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 A ND2 ASN 53 A ASN 90 1_555 D C1 NAG . A NAG 1090 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale3 A ND2 ASN 190 A ASN 227 1_555 E C1 NAG . A NAG 1227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale4 A ND2 ASN 282 A ASN 319 1_555 F C1 NAG . A NAG 1319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale5 A ND2 ASN 484 A ASN 521 1_555 G C1 NAG . A NAG 1521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale6 B ND2 ASN 46 B ASN 83 1_555 H C1 NAG . B NAG 1083 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale7 B ND2 ASN 53 B ASN 90 1_555 I C1 NAG . B NAG 1090 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale8 B ND2 ASN 190 B ASN 227 1_555 J C1 NAG . B NAG 1227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale9 B ND2 ASN 282 B ASN 319 1_555 K C1 NAG . B NAG 1319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale10 B ND2 ASN 484 B ASN 521 1_555 L C1 NAG . B NAG 1521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2GBC _atom_sites.fract_transf_matrix[1][1] 0.004804 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004804 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004804 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 1083 1083 NAG NAG . D 2 NAG A 1 1090 1090 NAG NAG . E 2 NAG A 1 1227 1227 NAG NAG . F 2 NAG A 1 1319 1319 NAG NAG . G 2 NAG A 1 1521 1521 NAG NAG . H 2 NAG B 1 1083 1083 NAG NAG . I 2 NAG B 1 1090 1090 NAG NAG . J 2 NAG B 1 1227 1227 NAG NAG . K 2 NAG B 1 1319 1319 NAG NAG . L 2 NAG B 1 1521 1521 NAG NAG . M 3 HOH A 1 1 1 HOH HOH . M 3 HOH A 2 2 2 HOH HOH . M 3 HOH A 3 3 3 HOH HOH . M 3 HOH A 4 4 4 HOH HOH . M 3 HOH A 5 5 5 HOH HOH . M 3 HOH A 6 6 6 HOH HOH . M 3 HOH A 7 7 7 HOH HOH . M 3 HOH A 8 8 8 HOH HOH . M 3 HOH A 9 9 9 HOH HOH . M 3 HOH A 10 10 10 HOH HOH . N 3 HOH B 1 11 11 HOH HOH . N 3 HOH B 2 12 12 HOH HOH . N 3 HOH B 3 13 13 HOH HOH . N 3 HOH B 4 14 14 HOH HOH . N 3 HOH B 5 15 15 HOH HOH . N 3 HOH B 6 16 16 HOH HOH . N 3 HOH B 7 17 17 HOH HOH . N 3 HOH B 8 18 18 HOH HOH . N 3 HOH B 9 19 19 HOH HOH . N 3 HOH B 10 20 20 HOH HOH . N 3 HOH B 11 21 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 2 26.917 40.532 -140.491 1 104.69 ? C1 NAG 1090 B 1 HETATM 2 C C2 NAG . . . I 2 27.105 41.596 -141.601 1 104.69 ? C2 NAG 1090 B 1 HETATM 3 C C3 NAG . . . I 2 28.091 42.69 -141.106 1 104.69 ? C3 NAG 1090 B 1 HETATM 4 C C4 NAG . . . I 2 27.673 43.228 -139.718 1 104.69 ? C4 NAG 1090 B 1 HETATM 5 C C5 NAG . . . I 2 27.425 42.059 -138.74 1 104.69 ? C5 NAG 1090 B 1 HETATM 6 C C6 NAG . . . I 2 26.9 42.439 -137.371 1 104.69 ? C6 NAG 1090 B 1 HETATM 7 C C7 NAG . . . I 2 28.795 40.718 -143.181 1 104.69 ? C7 NAG 1090 B 1 HETATM 8 C C8 NAG . . . I 2 29.044 40.087 -144.542 1 104.69 ? C8 NAG 1090 B 1 HETATM 9 N N2 NAG . . . I 2 27.522 40.991 -142.872 1 104.69 ? N2 NAG 1090 B 1 HETATM 10 O O3 NAG . . . I 2 28.137 43.775 -142.03 1 104.69 ? O3 NAG 1090 B 1 HETATM 11 O O4 NAG . . . I 2 28.699 44.076 -139.217 1 104.69 ? O4 NAG 1090 B 1 HETATM 12 O O5 NAG . . . I 2 26.455 41.162 -139.296 1 104.69 ? O5 NAG 1090 B 1 HETATM 13 O O6 NAG . . . I 2 26.171 41.359 -136.791 1 104.69 ? O6 NAG 1090 B 1 HETATM 14 O O7 NAG . . . I 2 29.746 40.946 -142.441 1 104.69 ? O7 NAG 1090 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #