data_2GBC
#
_model_server_result.job_id            Jo-9diXsKXUFGqVaAs5Hlg 
_model_server_result.datetime_utc      '2024-11-21 17:45:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2gbc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1227}' 
#
_entry.id    2GBC 
#
_exptl.entry_id    2GBC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2GBC 
_cell.length_a            208.152 
_cell.length_b            208.152 
_cell.length_c            208.152 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2GBC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_454 -z-1/2,-x,y-1/2 0 0 -1 -1 0 0 0 1 0 -104.076 0 -104.076 
3 'crystal symmetry operation' 10_554 -y,z+1/2,-x-1/2 0 -1 0 0 0 1 -1 0 0 0 104.076 -104.076 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 289 A CYS 326 1_555 A SG CYS 300 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 A SG CYS 346 A CYS 383 1_555 A SG CYS 358 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 408 A CYS 445 1_555 A SG CYS 411 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 A SG CYS 418 A CYS 455 1_555 A SG CYS 436 A CYS 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 A SG CYS 613 A CYS 650 1_555 A SG CYS 726 A CYS 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf6 B SG CYS 289 B CYS 326 1_555 B SG CYS 300 B CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf7 B SG CYS 346 B CYS 383 1_555 B SG CYS 358 B CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 B SG CYS 408 B CYS 445 1_555 B SG CYS 411 B CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf9 B SG CYS 418 B CYS 455 1_555 B SG CYS 436 B CYS 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf10 B SG CYS 613 B CYS 650 1_555 B SG CYS 726 B CYS 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 A ND2 ASN 46 A ASN 83 1_555 C C1 NAG . A NAG 1083 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale2 A ND2 ASN 53 A ASN 90 1_555 D C1 NAG . A NAG 1090 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale3 A ND2 ASN 190 A ASN 227 1_555 E C1 NAG . A NAG 1227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale4 A ND2 ASN 282 A ASN 319 1_555 F C1 NAG . A NAG 1319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale5 A ND2 ASN 484 A ASN 521 1_555 G C1 NAG . A NAG 1521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale6 B ND2 ASN 46 B ASN 83 1_555 H C1 NAG . B NAG 1083 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale7 B ND2 ASN 53 B ASN 90 1_555 I C1 NAG . B NAG 1090 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale8 B ND2 ASN 190 B ASN 227 1_555 J C1 NAG . B NAG 1227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale9 B ND2 ASN 282 B ASN 319 1_555 K C1 NAG . B NAG 1319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale10 B ND2 ASN 484 B ASN 521 1_555 L C1 NAG . B NAG 1521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     2GBC 
_atom_sites.fract_transf_matrix[1][1]    0.004804 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004804 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004804 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 1083 1083 NAG NAG . 
D 2 NAG A 1 1090 1090 NAG NAG . 
E 2 NAG A 1 1227 1227 NAG NAG . 
F 2 NAG A 1 1319 1319 NAG NAG . 
G 2 NAG A 1 1521 1521 NAG NAG . 
H 2 NAG B 1 1083 1083 NAG NAG . 
I 2 NAG B 1 1090 1090 NAG NAG . 
J 2 NAG B 1 1227 1227 NAG NAG . 
K 2 NAG B 1 1319 1319 NAG NAG . 
L 2 NAG B 1 1521 1521 NAG NAG . 
M 3 HOH A 1 1 1 HOH HOH . 
M 3 HOH A 2 2 2 HOH HOH . 
M 3 HOH A 3 3 3 HOH HOH . 
M 3 HOH A 4 4 4 HOH HOH . 
M 3 HOH A 5 5 5 HOH HOH . 
M 3 HOH A 6 6 6 HOH HOH . 
M 3 HOH A 7 7 7 HOH HOH . 
M 3 HOH A 8 8 8 HOH HOH . 
M 3 HOH A 9 9 9 HOH HOH . 
M 3 HOH A 10 10 10 HOH HOH . 
N 3 HOH B 1 11 11 HOH HOH . 
N 3 HOH B 2 12 12 HOH HOH . 
N 3 HOH B 3 13 13 HOH HOH . 
N 3 HOH B 4 14 14 HOH HOH . 
N 3 HOH B 5 15 15 HOH HOH . 
N 3 HOH B 6 16 16 HOH HOH . 
N 3 HOH B 7 17 17 HOH HOH . 
N 3 HOH B 8 18 18 HOH HOH . 
N 3 HOH B 9 19 19 HOH HOH . 
N 3 HOH B 10 20 20 HOH HOH . 
N 3 HOH B 11 21 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . E 2 -5.561 20.958 -87.287 1 73.79 ? C1 NAG 1227 A 1 
HETATM 2 C C2 NAG . . . E 2 -6.623 19.863 -87.17 1 73.79 ? C2 NAG 1227 A 1 
HETATM 3 C C3 NAG . . . E 2 -6.216 18.69 -88.096 1 73.79 ? C3 NAG 1227 A 1 
HETATM 4 C C4 NAG . . . E 2 -6.192 19.256 -89.52 1 73.79 ? C4 NAG 1227 A 1 
HETATM 5 C C5 NAG . . . E 2 -5.149 20.37 -89.6 1 73.79 ? C5 NAG 1227 A 1 
HETATM 6 C C6 NAG . . . E 2 -5.115 20.997 -90.978 1 73.79 ? C6 NAG 1227 A 1 
HETATM 7 C C7 NAG . . . E 2 -6.333 18.418 -85.196 1 73.79 ? C7 NAG 1227 A 1 
HETATM 8 C C8 NAG . . . E 2 -6.695 18.236 -83.73 1 73.79 ? C8 NAG 1227 A 1 
HETATM 9 N N2 NAG . . . E 2 -6.854 19.5 -85.773 1 73.79 ? N2 NAG 1227 A 1 
HETATM 10 O O3 NAG . . . E 2 -7.159 17.63 -88.011 1 73.79 ? O3 NAG 1227 A 1 
HETATM 11 O O4 NAG . . . E 2 -5.918 18.25 -90.483 1 73.79 ? O4 NAG 1227 A 1 
HETATM 12 O O5 NAG . . . E 2 -5.47 21.424 -88.654 1 73.79 ? O5 NAG 1227 A 1 
HETATM 13 O O6 NAG . . . E 2 -6.344 21.625 -91.291 1 73.79 ? O6 NAG 1227 A 1 
HETATM 14 O O7 NAG . . . E 2 -5.613 17.598 -85.771 1 73.79 ? O7 NAG 1227 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           237 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#