data_2GBZ # _model_server_result.job_id vGGCZ7y_ON_8kcd_A3GFNw _model_server_result.datetime_utc '2025-03-06 09:39:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":5082}' # _entry.id 2GBZ # _exptl.entry_id 2GBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GBZ _cell.length_a 67.54 _cell.length_b 67.54 _cell.length_c 89.82 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 113 1_555 A SG CYS 113 A CYS 113 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc1 A OD1 ASP 15 A ASP 15 1_555 B MG MG . A MG 5082 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc2 B MG MG . A MG 5082 1_555 C O HOH . A HOH 5083 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc3 B MG MG . A MG 5082 1_555 C O HOH . A HOH 5084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc4 B MG MG . A MG 5082 1_555 C O HOH . A HOH 5085 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc5 B MG MG . A MG 5082 1_555 C O HOH . A HOH 5086 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2GBZ _atom_sites.fract_transf_matrix[1][1] 0.014806 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014806 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011133 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 5082 5082 MG MG2 . C 3 HOH A 1 198 198 HOH HOH . C 3 HOH A 2 210 210 HOH HOH . C 3 HOH A 3 212 212 HOH HOH . C 3 HOH A 4 213 213 HOH HOH . C 3 HOH A 5 214 214 HOH HOH . C 3 HOH A 6 217 217 HOH HOH . C 3 HOH A 7 218 218 HOH HOH . C 3 HOH A 8 219 219 HOH HOH . C 3 HOH A 9 222 222 HOH HOH . C 3 HOH A 10 225 225 HOH HOH . C 3 HOH A 11 226 226 HOH HOH . C 3 HOH A 12 228 228 HOH HOH . C 3 HOH A 13 231 231 HOH HOH . C 3 HOH A 14 234 234 HOH HOH . C 3 HOH A 15 235 235 HOH HOH . C 3 HOH A 16 236 236 HOH HOH . C 3 HOH A 17 237 237 HOH HOH . C 3 HOH A 18 238 238 HOH HOH . C 3 HOH A 19 239 239 HOH HOH . C 3 HOH A 20 240 240 HOH HOH . C 3 HOH A 21 242 242 HOH HOH . C 3 HOH A 22 243 243 HOH HOH . C 3 HOH A 23 244 244 HOH HOH . C 3 HOH A 24 246 246 HOH HOH . C 3 HOH A 25 247 247 HOH HOH . C 3 HOH A 26 248 248 HOH HOH . C 3 HOH A 27 249 249 HOH HOH . C 3 HOH A 28 250 250 HOH HOH . C 3 HOH A 29 251 251 HOH HOH . C 3 HOH A 30 252 252 HOH HOH . C 3 HOH A 31 253 253 HOH HOH . C 3 HOH A 32 254 254 HOH HOH . C 3 HOH A 33 257 257 HOH HOH . C 3 HOH A 34 258 258 HOH HOH . C 3 HOH A 35 259 259 HOH HOH . C 3 HOH A 36 260 260 HOH HOH . C 3 HOH A 37 261 261 HOH HOH . C 3 HOH A 38 262 262 HOH HOH . C 3 HOH A 39 263 263 HOH HOH . C 3 HOH A 40 264 264 HOH HOH . C 3 HOH A 41 265 265 HOH HOH . C 3 HOH A 42 266 266 HOH HOH . C 3 HOH A 43 267 267 HOH HOH . C 3 HOH A 44 268 268 HOH HOH . C 3 HOH A 45 270 270 HOH HOH . C 3 HOH A 46 271 271 HOH HOH . C 3 HOH A 47 272 272 HOH HOH . C 3 HOH A 48 273 273 HOH HOH . C 3 HOH A 49 274 274 HOH HOH . C 3 HOH A 50 275 275 HOH HOH . C 3 HOH A 51 276 276 HOH HOH . C 3 HOH A 52 277 277 HOH HOH . C 3 HOH A 53 278 278 HOH HOH . C 3 HOH A 54 279 279 HOH HOH . C 3 HOH A 55 280 280 HOH HOH . C 3 HOH A 56 281 281 HOH HOH . C 3 HOH A 57 284 284 HOH HOH . C 3 HOH A 58 285 285 HOH HOH . C 3 HOH A 59 286 286 HOH HOH . C 3 HOH A 60 287 287 HOH HOH . C 3 HOH A 61 288 288 HOH HOH . C 3 HOH A 62 289 289 HOH HOH . C 3 HOH A 63 290 290 HOH HOH . C 3 HOH A 64 291 291 HOH HOH . C 3 HOH A 65 292 292 HOH HOH . C 3 HOH A 66 5081 5081 HOH HOH . C 3 HOH A 67 5083 5083 HOH HOH . C 3 HOH A 68 5084 5084 HOH HOH . C 3 HOH A 69 5085 5085 HOH HOH . C 3 HOH A 70 5086 5086 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -5.295 _atom_site.Cartn_y -14.984 _atom_site.Cartn_z 10.078 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 5082 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #