data_2GCN # _model_server_result.job_id jR1havrOknG-4n_6E09EOw _model_server_result.datetime_utc '2024-11-27 03:06:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2gcn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":3005}' # _entry.id 2GCN # _exptl.entry_id 2GCN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GCN _cell.length_a 44.214 _cell.length_b 56.617 _cell.length_c 81.834 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GCN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 39 A THR 19 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc2 A O THR 57 A THR 37 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc3 C O1B GDP . A GDP 1001 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc4 B MG MG . A MG 2001 1_555 I O HOH . A HOH 3143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc5 B MG MG . A MG 2001 1_555 I O HOH . A HOH 3144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc6 B MG MG . A MG 2001 1_555 I O HOH . A HOH 3145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 2GCN _atom_sites.fract_transf_matrix[1][1] 0.02262 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01766 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 2001 2001 MG MG . C 3 GDP A 1 1001 1001 GDP GDP . D 4 EDO A 1 3001 3001 EDO EDO . E 4 EDO A 1 3002 3002 EDO EDO . F 4 EDO A 1 3003 3003 EDO EDO . G 4 EDO A 1 3004 3004 EDO EDO . H 4 EDO A 1 3005 3005 EDO EDO . I 5 HOH A 1 3006 1 HOH HOH . I 5 HOH A 2 3007 2 HOH HOH . I 5 HOH A 3 3008 3 HOH HOH . I 5 HOH A 4 3009 4 HOH HOH . I 5 HOH A 5 3010 5 HOH HOH . I 5 HOH A 6 3011 6 HOH HOH . I 5 HOH A 7 3012 7 HOH HOH . I 5 HOH A 8 3013 8 HOH HOH . I 5 HOH A 9 3014 9 HOH HOH . I 5 HOH A 10 3015 10 HOH HOH . I 5 HOH A 11 3016 11 HOH HOH . I 5 HOH A 12 3017 12 HOH HOH . I 5 HOH A 13 3018 13 HOH HOH . I 5 HOH A 14 3019 14 HOH HOH . I 5 HOH A 15 3020 15 HOH HOH . I 5 HOH A 16 3021 16 HOH HOH . I 5 HOH A 17 3022 17 HOH HOH . I 5 HOH A 18 3023 18 HOH HOH . I 5 HOH A 19 3024 19 HOH HOH . I 5 HOH A 20 3025 20 HOH HOH . I 5 HOH A 21 3026 21 HOH HOH . I 5 HOH A 22 3027 22 HOH HOH . I 5 HOH A 23 3028 23 HOH HOH . I 5 HOH A 24 3029 24 HOH HOH . I 5 HOH A 25 3030 25 HOH HOH . I 5 HOH A 26 3031 26 HOH HOH . I 5 HOH A 27 3032 27 HOH HOH . I 5 HOH A 28 3033 28 HOH HOH . I 5 HOH A 29 3034 29 HOH HOH . I 5 HOH A 30 3035 30 HOH HOH . I 5 HOH A 31 3036 31 HOH HOH . I 5 HOH A 32 3037 32 HOH HOH . I 5 HOH A 33 3038 33 HOH HOH . I 5 HOH A 34 3039 34 HOH HOH . I 5 HOH A 35 3040 35 HOH HOH . I 5 HOH A 36 3041 36 HOH HOH . I 5 HOH A 37 3042 37 HOH HOH . I 5 HOH A 38 3043 38 HOH HOH . I 5 HOH A 39 3044 39 HOH HOH . I 5 HOH A 40 3045 40 HOH HOH . I 5 HOH A 41 3046 41 HOH HOH . I 5 HOH A 42 3047 42 HOH HOH . I 5 HOH A 43 3048 43 HOH HOH . I 5 HOH A 44 3049 44 HOH HOH . I 5 HOH A 45 3050 45 HOH HOH . I 5 HOH A 46 3051 46 HOH HOH . I 5 HOH A 47 3052 47 HOH HOH . I 5 HOH A 48 3053 48 HOH HOH . I 5 HOH A 49 3054 49 HOH HOH . I 5 HOH A 50 3055 50 HOH HOH . I 5 HOH A 51 3056 51 HOH HOH . I 5 HOH A 52 3057 52 HOH HOH . I 5 HOH A 53 3058 53 HOH HOH . I 5 HOH A 54 3059 54 HOH HOH . I 5 HOH A 55 3060 55 HOH HOH . I 5 HOH A 56 3061 56 HOH HOH . I 5 HOH A 57 3062 57 HOH HOH . I 5 HOH A 58 3063 58 HOH HOH . I 5 HOH A 59 3064 59 HOH HOH . I 5 HOH A 60 3065 60 HOH HOH . I 5 HOH A 61 3066 61 HOH HOH . I 5 HOH A 62 3067 62 HOH HOH . I 5 HOH A 63 3068 63 HOH HOH . I 5 HOH A 64 3069 64 HOH HOH . I 5 HOH A 65 3070 65 HOH HOH . I 5 HOH A 66 3071 66 HOH HOH . I 5 HOH A 67 3072 67 HOH HOH . I 5 HOH A 68 3073 68 HOH HOH . I 5 HOH A 69 3074 69 HOH HOH . I 5 HOH A 70 3075 70 HOH HOH . I 5 HOH A 71 3076 71 HOH HOH . I 5 HOH A 72 3077 72 HOH HOH . I 5 HOH A 73 3078 73 HOH HOH . I 5 HOH A 74 3079 74 HOH HOH . I 5 HOH A 75 3080 75 HOH HOH . I 5 HOH A 76 3081 76 HOH HOH . I 5 HOH A 77 3082 77 HOH HOH . I 5 HOH A 78 3083 78 HOH HOH . I 5 HOH A 79 3084 79 HOH HOH . I 5 HOH A 80 3085 80 HOH HOH . I 5 HOH A 81 3086 81 HOH HOH . I 5 HOH A 82 3087 82 HOH HOH . I 5 HOH A 83 3088 83 HOH HOH . I 5 HOH A 84 3089 84 HOH HOH . I 5 HOH A 85 3090 85 HOH HOH . I 5 HOH A 86 3091 86 HOH HOH . I 5 HOH A 87 3092 87 HOH HOH . I 5 HOH A 88 3093 88 HOH HOH . I 5 HOH A 89 3094 89 HOH HOH . I 5 HOH A 90 3095 90 HOH HOH . I 5 HOH A 91 3096 91 HOH HOH . I 5 HOH A 92 3097 92 HOH HOH . I 5 HOH A 93 3098 93 HOH HOH . I 5 HOH A 94 3099 94 HOH HOH . I 5 HOH A 95 3100 95 HOH HOH . I 5 HOH A 96 3101 96 HOH HOH . I 5 HOH A 97 3102 97 HOH HOH . I 5 HOH A 98 3103 98 HOH HOH . I 5 HOH A 99 3104 99 HOH HOH . I 5 HOH A 100 3105 100 HOH HOH . I 5 HOH A 101 3106 101 HOH HOH . I 5 HOH A 102 3107 102 HOH HOH . I 5 HOH A 103 3108 103 HOH HOH . I 5 HOH A 104 3109 104 HOH HOH . I 5 HOH A 105 3110 105 HOH HOH . I 5 HOH A 106 3111 106 HOH HOH . I 5 HOH A 107 3112 107 HOH HOH . I 5 HOH A 108 3113 108 HOH HOH . I 5 HOH A 109 3114 109 HOH HOH . I 5 HOH A 110 3115 110 HOH HOH . I 5 HOH A 111 3116 111 HOH HOH . I 5 HOH A 112 3117 112 HOH HOH . I 5 HOH A 113 3118 113 HOH HOH . I 5 HOH A 114 3119 114 HOH HOH . I 5 HOH A 115 3120 115 HOH HOH . I 5 HOH A 116 3121 116 HOH HOH . I 5 HOH A 117 3122 117 HOH HOH . I 5 HOH A 118 3123 118 HOH HOH . I 5 HOH A 119 3124 119 HOH HOH . I 5 HOH A 120 3125 120 HOH HOH . I 5 HOH A 121 3126 121 HOH HOH . I 5 HOH A 122 3127 122 HOH HOH . I 5 HOH A 123 3128 123 HOH HOH . I 5 HOH A 124 3129 124 HOH HOH . I 5 HOH A 125 3130 125 HOH HOH . I 5 HOH A 126 3131 126 HOH HOH . I 5 HOH A 127 3132 127 HOH HOH . I 5 HOH A 128 3133 128 HOH HOH . I 5 HOH A 129 3134 129 HOH HOH . I 5 HOH A 130 3135 130 HOH HOH . I 5 HOH A 131 3136 131 HOH HOH . I 5 HOH A 132 3137 132 HOH HOH . I 5 HOH A 133 3138 133 HOH HOH . I 5 HOH A 134 3139 134 HOH HOH . I 5 HOH A 135 3140 135 HOH HOH . I 5 HOH A 136 3141 136 HOH HOH . I 5 HOH A 137 3142 137 HOH HOH . I 5 HOH A 138 3143 138 HOH HOH . I 5 HOH A 139 3144 139 HOH HOH . I 5 HOH A 140 3145 140 HOH HOH . I 5 HOH A 141 3146 141 HOH HOH . I 5 HOH A 142 3147 142 HOH HOH . I 5 HOH A 143 3148 143 HOH HOH . I 5 HOH A 144 3149 144 HOH HOH . I 5 HOH A 145 3150 145 HOH HOH . I 5 HOH A 146 3151 146 HOH HOH . I 5 HOH A 147 3152 147 HOH HOH . I 5 HOH A 148 3153 148 HOH HOH . I 5 HOH A 149 3154 149 HOH HOH . I 5 HOH A 150 3155 150 HOH HOH . I 5 HOH A 151 3156 151 HOH HOH . I 5 HOH A 152 3157 152 HOH HOH . I 5 HOH A 153 3158 153 HOH HOH . I 5 HOH A 154 3159 154 HOH HOH . I 5 HOH A 155 3160 155 HOH HOH . I 5 HOH A 156 3161 156 HOH HOH . I 5 HOH A 157 3162 157 HOH HOH . I 5 HOH A 158 3163 158 HOH HOH . I 5 HOH A 159 3164 159 HOH HOH . I 5 HOH A 160 3165 160 HOH HOH . I 5 HOH A 161 3166 161 HOH HOH . I 5 HOH A 162 3167 162 HOH HOH . I 5 HOH A 163 3168 163 HOH HOH . I 5 HOH A 164 3169 164 HOH HOH . I 5 HOH A 165 3170 165 HOH HOH . I 5 HOH A 166 3171 166 HOH HOH . I 5 HOH A 167 3172 167 HOH HOH . I 5 HOH A 168 3173 168 HOH HOH . I 5 HOH A 169 3174 169 HOH HOH . I 5 HOH A 170 3175 170 HOH HOH . I 5 HOH A 171 3176 171 HOH HOH . I 5 HOH A 172 3177 172 HOH HOH . I 5 HOH A 173 3178 173 HOH HOH . I 5 HOH A 174 3179 174 HOH HOH . I 5 HOH A 175 3180 175 HOH HOH . I 5 HOH A 176 3181 176 HOH HOH . I 5 HOH A 177 3182 177 HOH HOH . I 5 HOH A 178 3183 178 HOH HOH . I 5 HOH A 179 3184 179 HOH HOH . I 5 HOH A 180 3185 180 HOH HOH . I 5 HOH A 181 3186 181 HOH HOH . I 5 HOH A 182 3187 182 HOH HOH . I 5 HOH A 183 3188 183 HOH HOH . I 5 HOH A 184 3189 184 HOH HOH . I 5 HOH A 185 3190 185 HOH HOH . I 5 HOH A 186 3191 186 HOH HOH . I 5 HOH A 187 3192 187 HOH HOH . I 5 HOH A 188 3193 188 HOH HOH . I 5 HOH A 189 3194 189 HOH HOH . I 5 HOH A 190 3195 190 HOH HOH . I 5 HOH A 191 3196 191 HOH HOH . I 5 HOH A 192 3197 192 HOH HOH . I 5 HOH A 193 3198 193 HOH HOH . I 5 HOH A 194 3199 194 HOH HOH . I 5 HOH A 195 3200 195 HOH HOH . I 5 HOH A 196 3201 196 HOH HOH . I 5 HOH A 197 3202 197 HOH HOH . I 5 HOH A 198 3203 198 HOH HOH . I 5 HOH A 199 3204 199 HOH HOH . I 5 HOH A 200 3205 200 HOH HOH . I 5 HOH A 201 3206 201 HOH HOH . I 5 HOH A 202 3207 202 HOH HOH . I 5 HOH A 203 3208 203 HOH HOH . I 5 HOH A 204 3209 204 HOH HOH . I 5 HOH A 205 3210 205 HOH HOH . I 5 HOH A 206 3211 206 HOH HOH . I 5 HOH A 207 3212 207 HOH HOH . I 5 HOH A 208 3213 208 HOH HOH . I 5 HOH A 209 3214 209 HOH HOH . I 5 HOH A 210 3215 210 HOH HOH . I 5 HOH A 211 3216 211 HOH HOH . I 5 HOH A 212 3217 212 HOH HOH . I 5 HOH A 213 3218 213 HOH HOH . I 5 HOH A 214 3219 214 HOH HOH . I 5 HOH A 215 3220 215 HOH HOH . I 5 HOH A 216 3221 216 HOH HOH . I 5 HOH A 217 3222 217 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 4 -7.467 -2.944 18.183 1 33.27 ? C1 EDO 3005 A 1 HETATM 2 O O1 EDO . . . H 4 -7.891 -2.177 19.311 1 35.03 ? O1 EDO 3005 A 1 HETATM 3 C C2 EDO . . . H 4 -6.486 -2.039 17.449 1 31.94 ? C2 EDO 3005 A 1 HETATM 4 O O2 EDO . . . H 4 -6.665 -0.709 17.966 1 32.3 ? O2 EDO 3005 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #