data_2GCP
#
_model_server_result.job_id            dbPZcD3adG0nwLWBEBYaMw 
_model_server_result.datetime_utc      '2024-11-23 10:35:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2gcp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":3002}' 
#
_entry.id    2GCP 
#
_exptl.entry_id    2GCP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2GCP 
_cell.length_a            59.435 
_cell.length_b            59.435 
_cell.length_c            138.09 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2GCP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 39 A THR 19 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
metalc ? metalc2 A OG1 THR 57 A THR 37 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc3 A NE2 HIS 125 A HIS 105 1_555 C MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? 
metalc ? metalc4 E O3G GSP . A GSP 1001 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc5 E O2B GSP . A GSP 1001 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc6 B MG MG . A MG 2001 1_555 H O HOH . A HOH 3025 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc7 B MG MG . A MG 2001 1_555 H O HOH . A HOH 3036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc8 C MG MG . A MG 2002 1_555 H O HOH . A HOH 3089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.075 ? 
metalc ? metalc9 C MG MG . A MG 2002 1_555 H O HOH . A HOH 3090 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? 
metalc ? metalc10 C MG MG . A MG 2002 1_555 H O HOH . A HOH 3091 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     2GCP 
_atom_sites.fract_transf_matrix[1][1]    0.01682 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01682 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00724 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 2001 2001 MG MG . 
C 2 MG A 1 2002 2002 MG MG . 
D 2 MG A 1 2003 2003 MG MG . 
E 3 GSP A 1 1001 1001 GSP GSP . 
F 4 EDO A 1 3001 3001 EDO EDO . 
G 4 EDO A 1 3002 3002 EDO EDO . 
H 5 HOH A 1 3003 1 HOH HOH . 
H 5 HOH A 2 3004 2 HOH HOH . 
H 5 HOH A 3 3005 3 HOH HOH . 
H 5 HOH A 4 3006 4 HOH HOH . 
H 5 HOH A 5 3007 5 HOH HOH . 
H 5 HOH A 6 3008 6 HOH HOH . 
H 5 HOH A 7 3009 7 HOH HOH . 
H 5 HOH A 8 3010 8 HOH HOH . 
H 5 HOH A 9 3011 9 HOH HOH . 
H 5 HOH A 10 3012 10 HOH HOH . 
H 5 HOH A 11 3013 11 HOH HOH . 
H 5 HOH A 12 3014 12 HOH HOH . 
H 5 HOH A 13 3015 13 HOH HOH . 
H 5 HOH A 14 3016 14 HOH HOH . 
H 5 HOH A 15 3017 15 HOH HOH . 
H 5 HOH A 16 3018 16 HOH HOH . 
H 5 HOH A 17 3019 17 HOH HOH . 
H 5 HOH A 18 3020 18 HOH HOH . 
H 5 HOH A 19 3021 19 HOH HOH . 
H 5 HOH A 20 3022 20 HOH HOH . 
H 5 HOH A 21 3023 21 HOH HOH . 
H 5 HOH A 22 3024 22 HOH HOH . 
H 5 HOH A 23 3025 23 HOH HOH . 
H 5 HOH A 24 3026 24 HOH HOH . 
H 5 HOH A 25 3027 25 HOH HOH . 
H 5 HOH A 26 3028 26 HOH HOH . 
H 5 HOH A 27 3029 27 HOH HOH . 
H 5 HOH A 28 3030 28 HOH HOH . 
H 5 HOH A 29 3031 29 HOH HOH . 
H 5 HOH A 30 3032 30 HOH HOH . 
H 5 HOH A 31 3033 31 HOH HOH . 
H 5 HOH A 32 3034 32 HOH HOH . 
H 5 HOH A 33 3035 33 HOH HOH . 
H 5 HOH A 34 3036 34 HOH HOH . 
H 5 HOH A 35 3037 35 HOH HOH . 
H 5 HOH A 36 3038 36 HOH HOH . 
H 5 HOH A 37 3039 37 HOH HOH . 
H 5 HOH A 38 3040 38 HOH HOH . 
H 5 HOH A 39 3041 39 HOH HOH . 
H 5 HOH A 40 3042 40 HOH HOH . 
H 5 HOH A 41 3043 41 HOH HOH . 
H 5 HOH A 42 3044 43 HOH HOH . 
H 5 HOH A 43 3045 44 HOH HOH . 
H 5 HOH A 44 3046 45 HOH HOH . 
H 5 HOH A 45 3047 46 HOH HOH . 
H 5 HOH A 46 3048 47 HOH HOH . 
H 5 HOH A 47 3049 48 HOH HOH . 
H 5 HOH A 48 3050 49 HOH HOH . 
H 5 HOH A 49 3051 50 HOH HOH . 
H 5 HOH A 50 3052 51 HOH HOH . 
H 5 HOH A 51 3053 52 HOH HOH . 
H 5 HOH A 52 3054 53 HOH HOH . 
H 5 HOH A 53 3055 54 HOH HOH . 
H 5 HOH A 54 3056 55 HOH HOH . 
H 5 HOH A 55 3057 56 HOH HOH . 
H 5 HOH A 56 3058 57 HOH HOH . 
H 5 HOH A 57 3059 58 HOH HOH . 
H 5 HOH A 58 3060 59 HOH HOH . 
H 5 HOH A 59 3061 60 HOH HOH . 
H 5 HOH A 60 3062 61 HOH HOH . 
H 5 HOH A 61 3063 62 HOH HOH . 
H 5 HOH A 62 3064 63 HOH HOH . 
H 5 HOH A 63 3065 64 HOH HOH . 
H 5 HOH A 64 3066 65 HOH HOH . 
H 5 HOH A 65 3067 66 HOH HOH . 
H 5 HOH A 66 3068 67 HOH HOH . 
H 5 HOH A 67 3069 68 HOH HOH . 
H 5 HOH A 68 3070 69 HOH HOH . 
H 5 HOH A 69 3071 70 HOH HOH . 
H 5 HOH A 70 3072 71 HOH HOH . 
H 5 HOH A 71 3073 72 HOH HOH . 
H 5 HOH A 72 3074 73 HOH HOH . 
H 5 HOH A 73 3075 74 HOH HOH . 
H 5 HOH A 74 3076 75 HOH HOH . 
H 5 HOH A 75 3077 76 HOH HOH . 
H 5 HOH A 76 3078 77 HOH HOH . 
H 5 HOH A 77 3079 78 HOH HOH . 
H 5 HOH A 78 3080 79 HOH HOH . 
H 5 HOH A 79 3081 80 HOH HOH . 
H 5 HOH A 80 3082 81 HOH HOH . 
H 5 HOH A 81 3083 82 HOH HOH . 
H 5 HOH A 82 3084 83 HOH HOH . 
H 5 HOH A 83 3085 84 HOH HOH . 
H 5 HOH A 84 3086 85 HOH HOH . 
H 5 HOH A 85 3087 86 HOH HOH . 
H 5 HOH A 86 3088 87 HOH HOH . 
H 5 HOH A 87 3089 88 HOH HOH . 
H 5 HOH A 88 3090 89 HOH HOH . 
H 5 HOH A 89 3091 90 HOH HOH . 
H 5 HOH A 90 3092 91 HOH HOH . 
H 5 HOH A 91 3093 92 HOH HOH . 
H 5 HOH A 92 3094 93 HOH HOH . 
H 5 HOH A 93 3095 94 HOH HOH . 
H 5 HOH A 94 3096 95 HOH HOH . 
H 5 HOH A 95 3097 96 HOH HOH . 
H 5 HOH A 96 3098 97 HOH HOH . 
H 5 HOH A 97 3099 98 HOH HOH . 
H 5 HOH A 98 3100 99 HOH HOH . 
H 5 HOH A 99 3101 100 HOH HOH . 
H 5 HOH A 100 3102 101 HOH HOH . 
H 5 HOH A 101 3103 102 HOH HOH . 
H 5 HOH A 102 3104 103 HOH HOH . 
H 5 HOH A 103 3105 104 HOH HOH . 
H 5 HOH A 104 3106 105 HOH HOH . 
H 5 HOH A 105 3107 106 HOH HOH . 
H 5 HOH A 106 3108 107 HOH HOH . 
H 5 HOH A 107 3109 108 HOH HOH . 
H 5 HOH A 108 3110 109 HOH HOH . 
H 5 HOH A 109 3111 110 HOH HOH . 
H 5 HOH A 110 3112 111 HOH HOH . 
H 5 HOH A 111 3113 112 HOH HOH . 
H 5 HOH A 112 3114 114 HOH HOH . 
H 5 HOH A 113 3115 115 HOH HOH . 
H 5 HOH A 114 3116 116 HOH HOH . 
H 5 HOH A 115 3117 117 HOH HOH . 
H 5 HOH A 116 3118 118 HOH HOH . 
H 5 HOH A 117 3119 119 HOH HOH . 
H 5 HOH A 118 3120 120 HOH HOH . 
H 5 HOH A 119 3121 121 HOH HOH . 
H 5 HOH A 120 3122 122 HOH HOH . 
H 5 HOH A 121 3123 123 HOH HOH . 
H 5 HOH A 122 3124 125 HOH HOH . 
H 5 HOH A 123 3125 126 HOH HOH . 
H 5 HOH A 124 3126 127 HOH HOH . 
H 5 HOH A 125 3127 128 HOH HOH . 
H 5 HOH A 126 3128 129 HOH HOH . 
H 5 HOH A 127 3129 130 HOH HOH . 
H 5 HOH A 128 3130 131 HOH HOH . 
H 5 HOH A 129 3131 132 HOH HOH . 
H 5 HOH A 130 3132 133 HOH HOH . 
H 5 HOH A 131 3133 134 HOH HOH . 
H 5 HOH A 132 3134 135 HOH HOH . 
H 5 HOH A 133 3135 137 HOH HOH . 
H 5 HOH A 134 3136 138 HOH HOH . 
H 5 HOH A 135 3137 139 HOH HOH . 
H 5 HOH A 136 3138 140 HOH HOH . 
H 5 HOH A 137 3139 142 HOH HOH . 
H 5 HOH A 138 3140 143 HOH HOH . 
H 5 HOH A 139 3141 144 HOH HOH . 
H 5 HOH A 140 3142 145 HOH HOH . 
H 5 HOH A 141 3143 146 HOH HOH . 
H 5 HOH A 142 3144 147 HOH HOH . 
H 5 HOH A 143 3145 148 HOH HOH . 
H 5 HOH A 144 3146 149 HOH HOH . 
H 5 HOH A 145 3147 150 HOH HOH . 
H 5 HOH A 146 3148 151 HOH HOH . 
H 5 HOH A 147 3149 153 HOH HOH . 
H 5 HOH A 148 3150 154 HOH HOH . 
H 5 HOH A 149 3151 155 HOH HOH . 
H 5 HOH A 150 3152 157 HOH HOH . 
H 5 HOH A 151 3153 158 HOH HOH . 
H 5 HOH A 152 3154 160 HOH HOH . 
H 5 HOH A 153 3155 161 HOH HOH . 
H 5 HOH A 154 3156 162 HOH HOH . 
H 5 HOH A 155 3157 164 HOH HOH . 
H 5 HOH A 156 3158 167 HOH HOH . 
H 5 HOH A 157 3159 169 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 4 17.64 9.339 15.156 1 20.45 ? C1 EDO 3002 A 1 
HETATM 2 O O1 EDO . . . G 4 17.998 9.877 16.442 1 14.02 ? O1 EDO 3002 A 1 
HETATM 3 C C2 EDO . . . G 4 18.514 9.979 14.069 1 18.29 ? C2 EDO 3002 A 1 
HETATM 4 O O2 EDO . . . G 4 19.388 8.978 13.663 1 19.63 ? O2 EDO 3002 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           4 
#