data_2GDM
#
_model_server_result.job_id            B--tl_S-FOY0wVlLeorkgQ 
_model_server_result.datetime_utc      '2025-02-05 18:50:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2gdm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":155}' 
#
_entry.id    2GDM 
#
_exptl.entry_id    2GDM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              31.999 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'OXYGEN MOLECULE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.8 
_cell.angle_gamma         90 
_cell.entry_id            2GDM 
_cell.length_a            93.19 
_cell.length_b            51.95 
_cell.length_c            38.3 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2GDM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 97 A HIS 97 1_555 B FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc2 B FE HEM . A HEM 154 1_555 C O1 OXY . A OXY 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
metalc ? metalc3 B FE HEM . A HEM 154 1_555 C O2 OXY . A OXY 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? 
metalc ? metalc4 B FE HEM . A HEM 154 1_555 D O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
#
_chem_comp.formula           O2 
_chem_comp.formula_weight    31.999 
_chem_comp.id                OXY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'OXYGEN MOLECULE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_chem_comp_bond.atom_id_1             O1 
_chem_comp_bond.atom_id_2             O2 
_chem_comp_bond.comp_id               OXY 
_chem_comp_bond.value_order           doub 
_chem_comp_bond.pdbx_ordinal          306 
_chem_comp_bond.pdbx_stereo_config    n 
_chem_comp_bond.pdbx_aromatic_flag    n 
#
_atom_sites.entry_id                     2GDM 
_atom_sites.fract_transf_matrix[1][1]    0.010731 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001661 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019249 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026421 
_atom_sites.fract_transf_vector[1]       -0.25 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 154 154 HEM HEM . 
C 3 OXY A 1 155 155 OXY OXY . 
D 4 HOH A 1 156 156 HOH HOH . 
D 4 HOH A 2 157 157 HOH HOH . 
D 4 HOH A 3 158 158 HOH HOH . 
D 4 HOH A 4 159 159 HOH HOH . 
D 4 HOH A 5 160 160 HOH HOH . 
D 4 HOH A 6 161 161 HOH HOH . 
D 4 HOH A 7 162 162 HOH HOH . 
D 4 HOH A 8 163 163 HOH HOH . 
D 4 HOH A 9 164 164 HOH HOH . 
D 4 HOH A 10 165 165 HOH HOH . 
D 4 HOH A 11 166 166 HOH HOH . 
D 4 HOH A 12 167 167 HOH HOH . 
D 4 HOH A 13 168 168 HOH HOH . 
D 4 HOH A 14 169 169 HOH HOH . 
D 4 HOH A 15 170 170 HOH HOH . 
D 4 HOH A 16 171 171 HOH HOH . 
D 4 HOH A 17 172 172 HOH HOH . 
D 4 HOH A 18 173 173 HOH HOH . 
D 4 HOH A 19 174 174 HOH HOH . 
D 4 HOH A 20 175 175 HOH HOH . 
D 4 HOH A 21 176 176 HOH HOH . 
D 4 HOH A 22 177 177 HOH HOH . 
D 4 HOH A 23 178 178 HOH HOH . 
D 4 HOH A 24 179 179 HOH HOH . 
D 4 HOH A 25 180 180 HOH HOH . 
D 4 HOH A 26 181 181 HOH HOH . 
D 4 HOH A 27 182 182 HOH HOH . 
D 4 HOH A 28 183 183 HOH HOH . 
D 4 HOH A 29 184 184 HOH HOH . 
D 4 HOH A 30 185 185 HOH HOH . 
D 4 HOH A 31 186 186 HOH HOH . 
D 4 HOH A 32 187 187 HOH HOH . 
D 4 HOH A 33 188 188 HOH HOH . 
D 4 HOH A 34 189 189 HOH HOH . 
D 4 HOH A 35 190 190 HOH HOH . 
D 4 HOH A 36 191 191 HOH HOH . 
D 4 HOH A 37 192 192 HOH HOH . 
D 4 HOH A 38 193 193 HOH HOH . 
D 4 HOH A 39 194 194 HOH HOH . 
D 4 HOH A 40 195 195 HOH HOH . 
D 4 HOH A 41 196 196 HOH HOH . 
D 4 HOH A 42 197 197 HOH HOH . 
D 4 HOH A 43 198 198 HOH HOH . 
D 4 HOH A 44 200 200 HOH HOH . 
D 4 HOH A 45 202 202 HOH HOH . 
D 4 HOH A 46 203 203 HOH HOH . 
D 4 HOH A 47 206 206 HOH HOH . 
D 4 HOH A 48 208 208 HOH HOH . 
D 4 HOH A 49 209 209 HOH HOH . 
D 4 HOH A 50 210 210 HOH HOH . 
D 4 HOH A 51 211 211 HOH HOH . 
D 4 HOH A 52 213 213 HOH HOH . 
D 4 HOH A 53 215 215 HOH HOH . 
D 4 HOH A 54 216 216 HOH HOH . 
D 4 HOH A 55 217 217 HOH HOH . 
D 4 HOH A 56 218 218 HOH HOH . 
D 4 HOH A 57 221 221 HOH HOH . 
D 4 HOH A 58 222 222 HOH HOH . 
D 4 HOH A 59 225 225 HOH HOH . 
D 4 HOH A 60 226 226 HOH HOH . 
D 4 HOH A 61 228 228 HOH HOH . 
D 4 HOH A 62 230 230 HOH HOH . 
D 4 HOH A 63 232 232 HOH HOH . 
D 4 HOH A 64 234 234 HOH HOH . 
D 4 HOH A 65 238 238 HOH HOH . 
D 4 HOH A 66 239 239 HOH HOH . 
D 4 HOH A 67 242 242 HOH HOH . 
D 4 HOH A 68 244 244 HOH HOH . 
D 4 HOH A 69 245 245 HOH HOH . 
D 4 HOH A 70 246 246 HOH HOH . 
D 4 HOH A 71 249 249 HOH HOH . 
D 4 HOH A 72 251 251 HOH HOH . 
D 4 HOH A 73 253 253 HOH HOH . 
D 4 HOH A 74 254 254 HOH HOH . 
D 4 HOH A 75 255 255 HOH HOH . 
D 4 HOH A 76 256 256 HOH HOH . 
D 4 HOH A 77 257 257 HOH HOH . 
D 4 HOH A 78 258 258 HOH HOH . 
D 4 HOH A 79 260 260 HOH HOH . 
D 4 HOH A 80 262 262 HOH HOH . 
D 4 HOH A 81 265 265 HOH HOH . 
D 4 HOH A 82 266 266 HOH HOH . 
D 4 HOH A 83 267 267 HOH HOH . 
D 4 HOH A 84 268 268 HOH HOH . 
D 4 HOH A 85 269 269 HOH HOH . 
D 4 HOH A 86 271 271 HOH HOH . 
D 4 HOH A 87 272 272 HOH HOH . 
D 4 HOH A 88 273 273 HOH HOH . 
D 4 HOH A 89 276 276 HOH HOH . 
D 4 HOH A 90 277 277 HOH HOH . 
D 4 HOH A 91 280 280 HOH HOH . 
D 4 HOH A 92 281 281 HOH HOH . 
D 4 HOH A 93 282 282 HOH HOH . 
D 4 HOH A 94 287 287 HOH HOH . 
D 4 HOH A 95 288 288 HOH HOH . 
D 4 HOH A 96 290 290 HOH HOH . 
D 4 HOH A 97 292 292 HOH HOH . 
D 4 HOH A 98 293 293 HOH HOH . 
D 4 HOH A 99 295 295 HOH HOH . 
D 4 HOH A 100 296 296 HOH HOH . 
D 4 HOH A 101 297 297 HOH HOH . 
D 4 HOH A 102 300 300 HOH HOH . 
D 4 HOH A 103 305 305 HOH HOH . 
D 4 HOH A 104 307 307 HOH HOH . 
D 4 HOH A 105 308 308 HOH HOH . 
D 4 HOH A 106 310 310 HOH HOH . 
D 4 HOH A 107 311 311 HOH HOH . 
D 4 HOH A 108 312 312 HOH HOH . 
D 4 HOH A 109 313 313 HOH HOH . 
D 4 HOH A 110 315 315 HOH HOH . 
D 4 HOH A 111 316 316 HOH HOH . 
D 4 HOH A 112 317 317 HOH HOH . 
D 4 HOH A 113 318 318 HOH HOH . 
D 4 HOH A 114 319 319 HOH HOH . 
D 4 HOH A 115 321 321 HOH HOH . 
D 4 HOH A 116 323 323 HOH HOH . 
D 4 HOH A 117 324 324 HOH HOH . 
D 4 HOH A 118 327 327 HOH HOH . 
D 4 HOH A 119 328 328 HOH HOH . 
D 4 HOH A 120 329 329 HOH HOH . 
D 4 HOH A 121 330 330 HOH HOH . 
D 4 HOH A 122 332 332 HOH HOH . 
D 4 HOH A 123 334 334 HOH HOH . 
D 4 HOH A 124 336 336 HOH HOH . 
D 4 HOH A 125 337 337 HOH HOH . 
D 4 HOH A 126 339 339 HOH HOH . 
D 4 HOH A 127 342 342 HOH HOH . 
D 4 HOH A 128 345 345 HOH HOH . 
D 4 HOH A 129 346 346 HOH HOH . 
D 4 HOH A 130 347 347 HOH HOH . 
D 4 HOH A 131 348 348 HOH HOH . 
D 4 HOH A 132 350 350 HOH HOH . 
D 4 HOH A 133 354 354 HOH HOH . 
D 4 HOH A 134 360 360 HOH HOH . 
D 4 HOH A 135 362 362 HOH HOH . 
D 4 HOH A 136 363 363 HOH HOH . 
D 4 HOH A 137 365 365 HOH HOH . 
D 4 HOH A 138 366 366 HOH HOH . 
D 4 HOH A 139 367 367 HOH HOH . 
D 4 HOH A 140 376 376 HOH HOH . 
D 4 HOH A 141 378 378 HOH HOH . 
D 4 HOH A 142 379 379 HOH HOH . 
D 4 HOH A 143 380 380 HOH HOH . 
D 4 HOH A 144 382 382 HOH HOH . 
D 4 HOH A 145 384 384 HOH HOH . 
D 4 HOH A 146 390 390 HOH HOH . 
D 4 HOH A 147 391 391 HOH HOH . 
D 4 HOH A 148 393 393 HOH HOH . 
D 4 HOH A 149 395 395 HOH HOH . 
D 4 HOH A 150 397 397 HOH HOH . 
D 4 HOH A 151 398 398 HOH HOH . 
D 4 HOH A 152 399 399 HOH HOH . 
D 4 HOH A 153 403 403 HOH HOH . 
D 4 HOH A 154 410 410 HOH HOH . 
D 4 HOH A 155 411 411 HOH HOH . 
D 4 HOH A 156 412 412 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 OXY . . . C 3 39.217 -29.615 27.082 0.7 9.17 ? O1 OXY 155 A 1 
HETATM 2 O O2 OXY . . . C 3 40.114 -30.28 26.564 0.7 19.33 ? O2 OXY 155 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           2 
#