data_2GEB # _model_server_result.job_id 9XHvjzMfH5zJ7ncwGupPtQ _model_server_result.datetime_utc '2024-11-18 11:46:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2geb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 2GEB # _exptl.entry_id 2GEB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2GEB _cell.length_a 52.21 _cell.length_b 88.36 _cell.length_c 93.03 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GEB _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_885 -x+3,-y+3,z -1 0 0 0 -1 0 0 0 1 156.63 265.08 0 3 'crystal symmetry operation' 3_857 -x+3,y,-z+2 -1 0 0 0 1 0 0 0 -1 156.63 0 186.06 4 'crystal symmetry operation' 4_587 x,-y+3,-z+2 1 0 0 0 -1 0 0 0 -1 0 265.08 186.06 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 11 A ASP 7 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc2 A OD2 ASP 11 A ASP 7 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.09 ? metalc ? metalc3 A OE2 GLU 105 A GLU 101 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc4 A OE1 GLU 105 A GLU 101 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.168 ? metalc ? metalc5 A OD1 ASP 106 A ASP 102 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc6 A OE1 GLU 139 A GLU 135 8_577 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc7 B CA CA . A CA 201 1_555 D O HOH . A HOH 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc8 B CA CA . A CA 201 1_555 D O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc9 B CA CA . A CA 201 1_555 D O HOH . A HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc10 B CA CA . A CA 201 1_555 D O HOH . A HOH 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc11 C CA CA . A CA 202 1_555 D O HOH . A HOH 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc12 C CA CA . A CA 202 1_555 D O HOH . A HOH 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc13 C CA CA . A CA 202 1_555 D O HOH . A HOH 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc14 C CA CA . A CA 202 1_555 D O HOH . A HOH 273 8_577 ? ? ? ? ? ? ? ? ? ? ? ? 3.285 ? metalc ? metalc15 C CA CA . A CA 202 1_555 D O HOH . A HOH 388 8_577 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2GEB _atom_sites.fract_transf_matrix[1][1] 0.019153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011317 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 201 201 CA CA2 . C 2 CA A 1 202 202 CA CA2 . D 3 HOH A 1 203 1 HOH TIP . D 3 HOH A 2 204 2 HOH TIP . D 3 HOH A 3 205 3 HOH TIP . D 3 HOH A 4 206 4 HOH TIP . D 3 HOH A 5 207 5 HOH TIP . D 3 HOH A 6 208 6 HOH TIP . D 3 HOH A 7 209 7 HOH TIP . D 3 HOH A 8 210 8 HOH TIP . D 3 HOH A 9 211 9 HOH TIP . D 3 HOH A 10 212 10 HOH TIP . D 3 HOH A 11 213 11 HOH TIP . D 3 HOH A 12 214 12 HOH TIP . D 3 HOH A 13 215 13 HOH TIP . D 3 HOH A 14 216 14 HOH TIP . D 3 HOH A 15 217 15 HOH TIP . D 3 HOH A 16 218 16 HOH TIP . D 3 HOH A 17 219 17 HOH TIP . D 3 HOH A 18 220 18 HOH TIP . D 3 HOH A 19 221 19 HOH TIP . D 3 HOH A 20 222 20 HOH TIP . D 3 HOH A 21 223 21 HOH TIP . D 3 HOH A 22 224 22 HOH TIP . D 3 HOH A 23 225 23 HOH TIP . D 3 HOH A 24 226 24 HOH TIP . D 3 HOH A 25 227 25 HOH TIP . D 3 HOH A 26 228 26 HOH TIP . D 3 HOH A 27 229 27 HOH TIP . D 3 HOH A 28 230 28 HOH TIP . D 3 HOH A 29 231 29 HOH TIP . D 3 HOH A 30 232 30 HOH TIP . D 3 HOH A 31 233 31 HOH TIP . D 3 HOH A 32 234 32 HOH TIP . D 3 HOH A 33 235 33 HOH TIP . D 3 HOH A 34 236 34 HOH TIP . D 3 HOH A 35 237 35 HOH TIP . D 3 HOH A 36 238 36 HOH TIP . D 3 HOH A 37 239 37 HOH TIP . D 3 HOH A 38 240 38 HOH TIP . D 3 HOH A 39 241 39 HOH TIP . D 3 HOH A 40 242 40 HOH TIP . D 3 HOH A 41 243 41 HOH TIP . D 3 HOH A 42 244 42 HOH TIP . D 3 HOH A 43 245 43 HOH TIP . D 3 HOH A 44 246 44 HOH TIP . D 3 HOH A 45 247 45 HOH TIP . D 3 HOH A 46 248 46 HOH TIP . D 3 HOH A 47 249 47 HOH TIP . D 3 HOH A 48 250 48 HOH TIP . D 3 HOH A 49 251 49 HOH TIP . D 3 HOH A 50 252 50 HOH TIP . D 3 HOH A 51 253 51 HOH TIP . D 3 HOH A 52 254 52 HOH TIP . D 3 HOH A 53 255 53 HOH TIP . D 3 HOH A 54 256 54 HOH TIP . D 3 HOH A 55 257 55 HOH TIP . D 3 HOH A 56 258 56 HOH TIP . D 3 HOH A 57 259 57 HOH TIP . D 3 HOH A 58 260 58 HOH TIP . D 3 HOH A 59 261 59 HOH TIP . D 3 HOH A 60 262 60 HOH TIP . D 3 HOH A 61 263 61 HOH TIP . D 3 HOH A 62 264 62 HOH TIP . D 3 HOH A 63 265 63 HOH TIP . D 3 HOH A 64 266 64 HOH TIP . D 3 HOH A 65 267 65 HOH TIP . D 3 HOH A 66 268 66 HOH TIP . D 3 HOH A 67 269 67 HOH TIP . D 3 HOH A 68 270 68 HOH TIP . D 3 HOH A 69 271 69 HOH TIP . D 3 HOH A 70 272 70 HOH TIP . D 3 HOH A 71 273 71 HOH TIP . D 3 HOH A 72 274 72 HOH TIP . D 3 HOH A 73 275 73 HOH TIP . D 3 HOH A 74 276 74 HOH TIP . D 3 HOH A 75 277 75 HOH TIP . D 3 HOH A 76 278 76 HOH TIP . D 3 HOH A 77 279 77 HOH TIP . D 3 HOH A 78 280 78 HOH TIP . D 3 HOH A 79 281 79 HOH TIP . D 3 HOH A 80 282 80 HOH TIP . D 3 HOH A 81 283 81 HOH TIP . D 3 HOH A 82 284 82 HOH TIP . D 3 HOH A 83 285 83 HOH TIP . D 3 HOH A 84 286 84 HOH TIP . D 3 HOH A 85 287 85 HOH TIP . D 3 HOH A 86 288 86 HOH TIP . D 3 HOH A 87 289 87 HOH TIP . D 3 HOH A 88 290 88 HOH TIP . D 3 HOH A 89 291 89 HOH TIP . D 3 HOH A 90 292 90 HOH TIP . D 3 HOH A 91 293 91 HOH TIP . D 3 HOH A 92 294 92 HOH TIP . D 3 HOH A 93 295 93 HOH TIP . D 3 HOH A 94 296 94 HOH TIP . D 3 HOH A 95 297 95 HOH TIP . D 3 HOH A 96 298 96 HOH TIP . D 3 HOH A 97 299 97 HOH TIP . D 3 HOH A 98 300 98 HOH TIP . D 3 HOH A 99 301 99 HOH TIP . D 3 HOH A 100 302 100 HOH TIP . D 3 HOH A 101 303 101 HOH TIP . D 3 HOH A 102 304 102 HOH TIP . D 3 HOH A 103 305 103 HOH TIP . D 3 HOH A 104 306 104 HOH TIP . D 3 HOH A 105 307 105 HOH TIP . D 3 HOH A 106 308 106 HOH TIP . D 3 HOH A 107 309 107 HOH TIP . D 3 HOH A 108 310 108 HOH TIP . D 3 HOH A 109 311 109 HOH TIP . D 3 HOH A 110 312 110 HOH TIP . D 3 HOH A 111 313 111 HOH TIP . D 3 HOH A 112 314 112 HOH TIP . D 3 HOH A 113 315 113 HOH TIP . D 3 HOH A 114 316 114 HOH TIP . D 3 HOH A 115 317 115 HOH TIP . D 3 HOH A 116 318 116 HOH TIP . D 3 HOH A 117 319 117 HOH TIP . D 3 HOH A 118 320 118 HOH TIP . D 3 HOH A 119 321 119 HOH TIP . D 3 HOH A 120 322 120 HOH TIP . D 3 HOH A 121 323 121 HOH TIP . D 3 HOH A 122 324 122 HOH TIP . D 3 HOH A 123 325 123 HOH TIP . D 3 HOH A 124 326 124 HOH TIP . D 3 HOH A 125 327 125 HOH TIP . D 3 HOH A 126 328 126 HOH TIP . D 3 HOH A 127 329 127 HOH TIP . D 3 HOH A 128 330 128 HOH TIP . D 3 HOH A 129 331 129 HOH TIP . D 3 HOH A 130 332 130 HOH TIP . D 3 HOH A 131 333 131 HOH TIP . D 3 HOH A 132 334 132 HOH TIP . D 3 HOH A 133 335 133 HOH TIP . D 3 HOH A 134 336 134 HOH TIP . D 3 HOH A 135 337 135 HOH TIP . D 3 HOH A 136 338 136 HOH TIP . D 3 HOH A 137 339 137 HOH TIP . D 3 HOH A 138 340 138 HOH TIP . D 3 HOH A 139 341 139 HOH TIP . D 3 HOH A 140 342 140 HOH TIP . D 3 HOH A 141 343 141 HOH TIP . D 3 HOH A 142 344 142 HOH TIP . D 3 HOH A 143 345 143 HOH TIP . D 3 HOH A 144 346 144 HOH TIP . D 3 HOH A 145 347 145 HOH TIP . D 3 HOH A 146 348 146 HOH TIP . D 3 HOH A 147 349 147 HOH TIP . D 3 HOH A 148 350 148 HOH TIP . D 3 HOH A 149 351 149 HOH TIP . D 3 HOH A 150 352 150 HOH TIP . D 3 HOH A 151 353 151 HOH TIP . D 3 HOH A 152 354 152 HOH TIP . D 3 HOH A 153 355 153 HOH TIP . D 3 HOH A 154 356 154 HOH TIP . D 3 HOH A 155 357 155 HOH TIP . D 3 HOH A 156 358 156 HOH TIP . D 3 HOH A 157 359 157 HOH TIP . D 3 HOH A 158 360 158 HOH TIP . D 3 HOH A 159 361 159 HOH TIP . D 3 HOH A 160 362 160 HOH TIP . D 3 HOH A 161 363 161 HOH TIP . D 3 HOH A 162 364 162 HOH TIP . D 3 HOH A 163 365 163 HOH TIP . D 3 HOH A 164 366 164 HOH TIP . D 3 HOH A 165 367 165 HOH TIP . D 3 HOH A 166 368 166 HOH TIP . D 3 HOH A 167 369 167 HOH TIP . D 3 HOH A 168 370 168 HOH TIP . D 3 HOH A 169 371 169 HOH TIP . D 3 HOH A 170 372 170 HOH TIP . D 3 HOH A 171 373 171 HOH TIP . D 3 HOH A 172 374 172 HOH TIP . D 3 HOH A 173 375 173 HOH TIP . D 3 HOH A 174 376 174 HOH TIP . D 3 HOH A 175 377 175 HOH TIP . D 3 HOH A 176 378 176 HOH TIP . D 3 HOH A 177 379 177 HOH TIP . D 3 HOH A 178 380 178 HOH TIP . D 3 HOH A 179 381 179 HOH TIP . D 3 HOH A 180 382 180 HOH TIP . D 3 HOH A 181 383 181 HOH TIP . D 3 HOH A 182 384 182 HOH TIP . D 3 HOH A 183 385 183 HOH TIP . D 3 HOH A 184 386 184 HOH TIP . D 3 HOH A 185 387 185 HOH TIP . D 3 HOH A 186 388 186 HOH TIP . D 3 HOH A 187 389 187 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 85.243 _atom_site.Cartn_y 108.274 _atom_site.Cartn_z 116.332 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #